View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13912_low_18 (Length: 448)

Name: NF13912_low_18
Description: NF13912
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13912_low_18
NF13912_low_18
[»] chr4 (5 HSPs)
chr4 (283-374)||(5826579-5826670)
chr4 (4-84)||(5828105-5828185)
chr4 (226-293)||(5827567-5827634)
chr4 (126-204)||(5827984-5828063)
chr4 (388-429)||(5826518-5826559)


Alignment Details
Target: chr4 (Bit Score: 84; Significance: 9e-40; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 283 - 374
Target Start/End: Complemental strand, 5826670 - 5826579
Alignment:
Q  283 cctattcatatactcagtggtcgagctagctcaattttcatgaggatgtcaaatataaatagtaaataaaatattgttgtctaactttttgt 374  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  5826670 cctattcatatactcagtggtcgagctagctcaattttcaggaggatgtcaaatataaatagtaaataaaatattgttgtccaactttttgt 5826579  T

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Target: chr4; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 4 - 84
Target Start/End: Complemental strand, 5828185 - 5828105
Alignment:
Q  4 gtgggtagattatactatatgttgaaatggaagtggtaaaagtaaaataaattcctcgtttctaatggacttatggaggcg 84  Q
    ||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5828185 gtgggtatattatattatatgttgaaatggaagtggtaaaagtaaaataaattcctcgtttctaatggacttatggaggcg 5828105  T

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Target: chr4; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 226 - 293
Target Start/End: Complemental strand, 5827634 - 5827567
Alignment:
Q  226 tatgtttatacgttgaattgattattgagcctccatggagtttgatccagcaatagccctattcatat 293  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5827634 tatgtttatacgttgaattgattattgagcctccatggagtttgatccagcaatagccctattcatat 5827567  T

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Target: chr4; HSP #4
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 126 - 204
Target Start/End: Complemental strand, 5828063 - 5827984
Alignment:
Q  126 tcgtggaggcttttggactttggaa-gctgcaaaatttggcaaggaatatgtattttagttgtattcgttattcatgaat 204  Q
    |||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  5828063 tcgtggaggcgtttggactttggaaagctgcaaaatttggcaaggaatatgtattttagttgtattcgttatccatgaat 5827984  T

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Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 388 - 429
Target Start/End: Complemental strand, 5826559 - 5826518
Alignment:
Q  388 tatgttgtccaacttaaaaagttagtcgatgtatctattaat 429  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  5826559 tatgttgtccaacttaaaaagttagtcgatgtatctattaat 5826518  T

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