View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13912_low_19 (Length: 435)
Name: NF13912_low_19
Description: NF13912
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13912_low_19 |
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Alignment Details
Target: chr7 (Bit Score: 360; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 9 - 421
Target Start/End: Complemental strand, 16874044 - 16873628
Alignment:
| Q |
9 |
agatgaaaagggaaagaaaacagaaaatatgtattaatcaagatcgcaaaatatgtattaatcagtcacaaaacgcgtttaatcaaaattatcccctccc |
108 |
Q |
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| T |
16874044 |
agatgaaaagggaaagaaaacagaaaatatgtattaatcaagatcgcaaaatatgtattaatcagtcacaaaactcgtttaatcaaaattatcccctccc |
16873945 |
T |
|
| Q |
109 |
ctcaagcgttattcaaatacttgtcgagaataaacaaaataacaacagaacctagcaatctcctaacaaactaatcaaataa----cttctctaacaact |
204 |
Q |
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| T |
16873944 |
ctcaagcgttattcaaatacttgtcgagaataaacaaaataacaacagaacctatcaatcacctaacaaactaatcaactaagtaactcctctaaaaact |
16873845 |
T |
|
| Q |
205 |
cttaattatattctagttatccttagtgcatacatagtctttgaactatttttagatagtcaatatatatttctcacgccttaatctagtaaagagtaga |
304 |
Q |
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| T |
16873844 |
cttaattatattctaattatccttagtgcatacatagtctttgaactatttttagatagtcaatatatatttctcacgccttaatctagtaaagagtaga |
16873745 |
T |
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| Q |
305 |
gaaagatttggttattgattctacaagccatatatttcattgtaacttaccagtagaaaatgatgtttaacgtatgatgcacgcatgacaacaacaaagg |
404 |
Q |
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| T |
16873744 |
gaaagatttggttattgattctacaagccatatatttcattgtaacttaccagtagaaaatgatgtttaacgtatgatgcacgcatgacaacaacaaagg |
16873645 |
T |
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| Q |
405 |
atggattacatgttttg |
421 |
Q |
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| T |
16873644 |
acggattgcttgttttg |
16873628 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 251 - 411
Target Start/End: Complemental strand, 16868731 - 16868571
Alignment:
| Q |
251 |
tatttttagatagtcaatatatatttctcacgccttaatctagtaaagagtagagaaagatttggttattgattctacaagccatatatttcattgtaac |
350 |
Q |
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| T |
16868731 |
tatttttaaattatcaatatatatagctcaccccttaatctagtaaagactagagaaatatttggttattggttctacaagcaaaatatgttattgtaac |
16868632 |
T |
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| Q |
351 |
ttaccagtagaaaatgatgtttaacgtatgatgcacgcatgacaacaacaaaggatggatt |
411 |
Q |
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| T |
16868631 |
ttaccattaaaaatttatgttcaacgtatgatgcacgcatgacaacaacaaaggatggatt |
16868571 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 350 - 421
Target Start/End: Complemental strand, 17606295 - 17606224
Alignment:
| Q |
350 |
cttaccagtagaaaatgatgtttaacgtatgatgcacgcatgacaacaacaaaggatggattacatgttttg |
421 |
Q |
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| T |
17606295 |
cttaccagaagaaaacggcgttcaacgtatgatgcacccatgacaacaacaaaggatggattacatattttg |
17606224 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 374 - 421
Target Start/End: Complemental strand, 16863851 - 16863804
Alignment:
| Q |
374 |
acgtatgatgcacgcatgacaacaacaaaggatggattacatgttttg |
421 |
Q |
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| T |
16863851 |
acgtatgatgcgcgcatgacaacaacaaaggatgggttacatgttttg |
16863804 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 56; Significance: 5e-23; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 330 - 421
Target Start/End: Complemental strand, 45270639 - 45270548
Alignment:
| Q |
330 |
agccatatatttcattgtaacttaccagtagaaaatgatgtttaacgtatgatgcacgcatgacaacaacaaaggatggattacatgttttg |
421 |
Q |
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| T |
45270639 |
agccaaatgtttctttgcaacttaccagaagaaaatggtgctcaacgtatgatgcacccatgacaacaacaaaggatggattacatgttttg |
45270548 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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