View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13912_low_2 (Length: 788)

Name: NF13912_low_2
Description: NF13912
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13912_low_2
NF13912_low_2
[»] chr8 (14 HSPs)
chr8 (15-772)||(34290514-34291272)
chr8 (46-171)||(12728856-12728981)
chr8 (626-760)||(12729879-12730012)
chr8 (325-429)||(11415142-11415246)
chr8 (342-410)||(20672757-20672825)
chr8 (325-417)||(11569435-11569527)
chr8 (365-424)||(9956832-9956891)
chr8 (331-382)||(31875579-31875630)
chr8 (256-311)||(43907811-43907866)
chr8 (356-426)||(27028822-27028892)
chr8 (446-491)||(4271830-4271875)
chr8 (325-382)||(5069732-5069789)
chr8 (349-398)||(8066772-8066821)
chr8 (325-398)||(25869244-25869317)
[»] chr7 (5 HSPs)
chr7 (51-143)||(28518956-28519048)
chr7 (331-417)||(3610724-3610810)
chr7 (349-419)||(24363603-24363673)
chr7 (364-429)||(20269564-20269629)
chr7 (326-379)||(39539760-39539813)
[»] chr1 (12 HSPs)
chr1 (272-417)||(27140478-27140623)
chr1 (337-415)||(1565525-1565603)
chr1 (262-310)||(17631019-17631067)
chr1 (329-397)||(26184768-26184836)
chr1 (272-314)||(2522699-2522741)
chr1 (349-419)||(44940339-44940408)
chr1 (359-429)||(49938735-49938805)
chr1 (365-398)||(601060-601093)
chr1 (339-380)||(4202143-4202184)
chr1 (365-410)||(4700084-4700129)
chr1 (339-392)||(6292518-6292571)
chr1 (339-417)||(28689444-28689524)
[»] chr4 (10 HSPs)
chr4 (325-429)||(2996561-2996665)
chr4 (343-424)||(6978958-6979039)
chr4 (445-487)||(7342077-7342119)
chr4 (342-398)||(29467619-29467675)
chr4 (356-424)||(54426036-54426104)
chr4 (325-392)||(19304951-19305018)
chr4 (325-398)||(6987719-6987792)
chr4 (343-424)||(11264294-11264375)
chr4 (348-393)||(39438539-39438584)
chr4 (356-429)||(41336748-41336821)
[»] chr6 (5 HSPs)
chr6 (356-429)||(34430470-34430543)
chr6 (324-378)||(2034423-2034477)
chr6 (356-429)||(6536603-6536676)
chr6 (325-398)||(34939763-34939836)
chr6 (325-378)||(2027384-2027437)
[»] chr5 (16 HSPs)
chr5 (344-417)||(5284445-5284518)
chr5 (325-389)||(11700356-11700420)
chr5 (325-417)||(32172653-32172745)
chr5 (247-312)||(14706184-14706249)
chr5 (339-395)||(14331389-14331445)
chr5 (447-491)||(33348082-33348126)
chr5 (339-415)||(40205066-40205142)
chr5 (357-429)||(43300866-43300938)
chr5 (341-416)||(17258877-17258952)
chr5 (330-425)||(35445826-35445921)
chr5 (339-417)||(2568658-2568736)
chr5 (333-398)||(8177518-8177583)
chr5 (325-378)||(12595694-12595747)
chr5 (356-429)||(16937892-16937965)
chr5 (364-429)||(25461079-25461144)
chr5 (326-419)||(41957430-41957523)
[»] chr2 (11 HSPs)
chr2 (341-429)||(1810653-1810740)
chr2 (349-417)||(39983342-39983410)
chr2 (332-402)||(25790141-25790211)
chr2 (325-398)||(9478318-9478391)
chr2 (334-419)||(10563545-10563630)
chr2 (264-417)||(43985209-43985362)
chr2 (366-425)||(9477944-9478003)
chr2 (365-416)||(13630299-13630350)
chr2 (356-421)||(12289793-12289858)
chr2 (336-417)||(33942150-33942231)
chr2 (356-429)||(41851523-41851596)
[»] chr3 (8 HSPs)
chr3 (364-429)||(33231716-33231780)
chr3 (265-314)||(41848634-41848683)
chr3 (326-398)||(27290880-27290952)
chr3 (359-430)||(30443880-30443951)
chr3 (262-312)||(22667508-22667558)
chr3 (262-312)||(22724147-22724197)
chr3 (332-398)||(30923883-30923949)
chr3 (265-314)||(31337330-31337379)
[»] scaffold0003 (1 HSPs)
scaffold0003 (331-414)||(306329-306412)
[»] scaffold0141 (1 HSPs)
scaffold0141 (258-312)||(9689-9743)


Alignment Details
Target: chr8 (Bit Score: 714; Significance: 0; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 714; E-Value: 0
Query Start/End: Original strand, 15 - 772
Target Start/End: Complemental strand, 34291272 - 34290514
Alignment:
Q  15 atgaagggactagtagtagagaaaaatgatatcatgccagataacttgtttgcttcatcctcagacagtttagcagcaaatgcattaaagctctttgtgt 114  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34291272 atgaagggactagtagtagaaaaaaatgatatcatgccagataacttgtttgcttcatcctcagacagtttagcagcaaatgcattaaagctctttgtgt 34291173  T
Q  115 agctgtatactatggattctttggcttcaacatggctgccaagtaaacaaagattaagaaacaatagaacagaaat-aaatcagaataaccaaattaatt 213  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  34291172 agctgtatactatggattctttggcttcaacatggctgccaagtaaacaaagattaagaaacaatagaacagaaatgaaatcagaataaccaaattaatt 34291073  T
Q  214 tctctcagatggcattgtgataataatgcctttaattttgaaactataggcctatttcgattgacttgtttgagttcatctactgacataaacacttgta 313  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34291072 tctctcagatggcattgtgataataatgcctttaattttgaaactagaggcctatttcgattgacttgtttgagttcatctactgacataaacacttgta 34290973  T
Q  314 attttagttacgagagtttatggagacagcttattacatgtccataagcctttttcagcttattttcattaactctccaggatagattagaaaaacaact 413  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34290972 attttagttatgagagtttatggagacagcttattacatgtccataagcctttttcagcttattttcattaactctccaggatagattagaaaaacaact 34290873  T
Q  414 tataacatatacaaaagtagtctgacttgtatgataagcatttacattataagcacttaattaaaatgtttatccaaattccaaatagggtcctatatag 513  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34290872 tataacatatacaaaagtagtctgacttgtatgataagcatttacattataagcacttaattaaaatgtttatccaaattccaaatagggtcctatatag 34290773  T
Q  514 tatttgattgaacatgagctacatatgtcacttttaagtaattttaggcttgcacttagaaggagagggaagtgtactgttgacaaattaaatagactag 613  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34290772 tatttgattgaacatgagctacatatgtcacttttaagtaattttaggcttgcacttagaaggagagggaagtgtactgttgacaaattaaatagactag 34290673  T
Q  614 tcaccnnnnnnnaacagctgagagaatatttaaatgactctctattgatccttctctactaacagggtgagctcctaggaaaacaatgtaaaacttctgt 713  Q
    |||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  34290672 tcacctttgtttaacagctgagagaatatttaaatgactctctattgatccttctctactaacagggtgagctcctaggaaaacaatgtaaaacttctgc 34290573  T
Q  714 aaacaagtcaaattgtgcctaagttaataaagaataaaacacaaaaaatagcatattgg 772  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34290572 aaacaagtcaaattgtgcctaagttaataaagaataaaacacaaaaaatagcatattgg 34290514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 98; E-Value: 7e-48
Query Start/End: Original strand, 46 - 171
Target Start/End: Original strand, 12728856 - 12728981
Alignment:
Q  46 tcatgccagataacttgtttgcttcatcctcagacagtttagcagcaaatgcattaaagctctttgtgtagctgtatactatggattctttggcttcaac 145  Q
    |||||| |||||||||||| ||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  12728856 tcatgctagataacttgttggcttcatcctcggatagtttagcagcaaatgcattaaagctctttgtgtagctgtatactatggactctttggcttcaac 12728955  T
Q  146 atggctgccaagtaaacaaagattaa 171  Q
     ||||||| |||||||||||||||||    
T  12728956 gtggctgctaagtaaacaaagattaa 12728981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 626 - 760
Target Start/End: Original strand, 12729879 - 12730012
Alignment:
Q  626 aacagctgagagaatatttaaatgactctctattgatccttctctactaacagggtga---gctcctaggaaaacaatgtaaaacttctgtaaacaagtc 722  Q
    ||||||||||||||||||||||||| |||||| || |||||||||||||||||| |||    |||||||||||||||||||||| ||||| |||  | |     
T  12729879 aacagctgagagaatatttaaatgagtctctactgctccttctctactaacaggatgatctcctcctaggaaaacaatgtaaaagttctgcaaaatatt- 12729977  T
Q  723 aaattgtgcctaagttaataaagaataaaacacaaaaa 760  Q
     ||||||  |||||||||||||||||||||||||||||    
T  12729978 -aattgt--ctaagttaataaagaataaaacacaaaaa 12730012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 325 - 429
Target Start/End: Complemental strand, 11415246 - 11415142
Alignment:
Q  325 gagagtttatggagacagcttattacatgtccataagcctttttcagcttattttcattaactctccaggatagattagaaaaacaacttataacatata 424  Q
    ||||||||||||| ||||||||| ||||||||||||||  || ||||||||||||||  ||||||| ||||||| |||  |||||| | |||||| ||||    
T  11415246 gagagtttatggaaacagcttataacatgtccataagctattctcagcttattttcacaaactctctaggatagcttatgaaaacagcgtataacttata 11415147  T
Q  425 caaaa 429  Q
     ||||    
T  11415146 taaaa 11415142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 342 - 410
Target Start/End: Complemental strand, 20672825 - 20672757
Alignment:
Q  342 gcttattacatgtccataagcctttttcagcttattttcattaactctccaggatagattagaaaaaca 410  Q
    |||||| |||||| |||||||  |||||||||||||||||| | ||||||||||||| ||| |||||||    
T  20672825 gcttatgacatgttcataagctgttttcagcttattttcataagctctccaggatagcttataaaaaca 20672757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 325 - 417
Target Start/End: Original strand, 11569435 - 11569527
Alignment:
Q  325 gagagtttatggagacagcttattacatgtccataagcctttttcagcttattttcattaactctccaggatagattagaaaaacaacttata 417  Q
    ||||| ||||||| ||||||||| |||||| ||||||   |||||||||||||||||  | ||||||| ||||| |||  |||||| ||||||    
T  11569435 gagagcttatggaaacagcttatgacatgtacataagttgttttcagcttattttcaaaatctctccatgatagcttatgaaaacagcttata 11569527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 365 - 424
Target Start/End: Original strand, 9956832 - 9956891
Alignment:
Q  365 ttttcagcttattttcattaactctccaggatagattagaaaaacaacttataacatata 424  Q
    |||||||||||||||||| |  |||||| |||||||||  ||||||||||||||| ||||    
T  9956832 ttttcagcttattttcataagttctccaagatagattatgaaaacaacttataacttata 9956891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 331 - 382
Target Start/End: Original strand, 31875579 - 31875630
Alignment:
Q  331 ttatggagacagcttattacatgtccataagcctttttcagcttattttcat 382  Q
    ||||||| ||| ||||| ||||||||||||||| |||||| |||||||||||    
T  31875579 ttatggaaacaacttatgacatgtccataagccattttcaacttattttcat 31875630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 256 - 311
Target Start/End: Original strand, 43907811 - 43907866
Alignment:
Q  256 actataggcctatttcgattgacttgtttgagttcatctactgacataaacacttg 311  Q
    ||||||||||||||| |||| |||  |||||||| ||||| |||||||||||||||    
T  43907811 actataggcctattttgattaactcatttgagtttatctattgacataaacacttg 43907866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 356 - 426
Target Start/End: Complemental strand, 27028892 - 27028822
Alignment:
Q  356 cataagcctttttcagcttattttcattaactctccaggatagattagaaaaacaacttataacatataca 426  Q
    |||||||  |||||||||||||||||| | ||||||| ||||| |||  |||||| |||||| ||||||||    
T  27028892 cataagctattttcagcttattttcataagctctccaagatagcttatgaaaacagcttatagcatataca 27028822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 446 - 491
Target Start/End: Complemental strand, 4271875 - 4271830
Alignment:
Q  446 gataagcatttacattataagcacttaattaaaatgtttatccaaa 491  Q
    |||||||||||| | |||||||||||||||||| |||||| |||||    
T  4271875 gataagcatttatactataagcacttaattaaactgtttagccaaa 4271830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 325 - 382
Target Start/End: Complemental strand, 5069789 - 5069732
Alignment:
Q  325 gagagtttatggagacagcttattacatgtccataagcctttttcagcttattttcat 382  Q
    ||||| ||||||| ||| ||||| |||||| |||||| | ||||||||||||||||||    
T  5069789 gagagcttatggaaacatcttataacatgttcataagtcattttcagcttattttcat 5069732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 349 - 398
Target Start/End: Original strand, 8066772 - 8066821
Alignment:
Q  349 acatgtccataagcctttttcagcttattttcattaactctccaggatag 398  Q
    |||||||||||||  ||||||||||||||||||| |||||| ||| ||||    
T  8066772 acatgtccataagtttttttcagcttattttcataaactctacagtatag 8066821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 325 - 398
Target Start/End: Original strand, 25869244 - 25869317
Alignment:
Q  325 gagagtttatggagacagcttattacatgtccataagcctttttcagcttattttcattaactctccaggatag 398  Q
    |||||| |||||| | | ||||| |||||||||||||   |||||||||||||| ||| ||||||||| |||||    
T  25869244 gagagtctatggaaataacttatgacatgtccataagttgttttcagcttatttccataaactctccatgatag 25869317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 53; Significance: 5e-21; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 51 - 143
Target Start/End: Complemental strand, 28519048 - 28518956
Alignment:
Q  51 ccagataacttgtttgcttcatcctcagacagtttagcagcaaatgcattaaagctctttgtgtagctgtatactatggattctttggcttca 143  Q
    ||||||||||| ||  ||||||| || |||||||| |||||||||||||| ||||||||||||||||| ||||| ||||| ||||||||||||    
T  28519048 ccagataacttattgacttcatcttctgacagttttgcagcaaatgcattgaagctctttgtgtagctatatacaatggactctttggcttca 28518956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 331 - 417
Target Start/End: Original strand, 3610724 - 3610810
Alignment:
Q  331 ttatggagacagcttattacatgtccataagcctttttcagcttattttcattaactctccaggatagattagaaaaacaacttata 417  Q
    ||||||| |||||| || ||||||||||||||||||||||||||||||  || | ||||| ||||||| |||  |||||||||||||    
T  3610724 ttatggaaacagctaatgacatgtccataagcctttttcagcttatttctataagctctctaggatagtttacgaaaacaacttata 3610810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 349 - 419
Target Start/End: Original strand, 24363603 - 24363673
Alignment:
Q  349 acatgtccataagcctttttcagcttattttcattaactctccaggatagattagaaaaacaacttataac 419  Q
    |||||||||||||   |||||||||||||| ||| | ||||||||||||| |||  |||||||||||||||    
T  24363603 acatgtccataagttgttttcagcttatttccataacctctccaggatagcttatgaaaacaacttataac 24363673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 364 - 429
Target Start/End: Complemental strand, 20269629 - 20269564
Alignment:
Q  364 tttttcagcttattttcattaactctccaggatagattagaaaaacaacttataacatatacaaaa 429  Q
    ||||||| ||||||||||| || ||||||  | || |||| ||||||||||||||||| |||||||    
T  20269629 tttttcaacttattttcataaattctccaatacagcttagtaaaacaacttataacatttacaaaa 20269564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 326 - 379
Target Start/End: Original strand, 39539760 - 39539813
Alignment:
Q  326 agagtttatggagacagcttattacatgtccataagcctttttcagcttatttt 379  Q
    |||||||| ||| ||| ||||| ||||||||||||||  |||||||||||||||    
T  39539760 agagtttacggaaacaacttatgacatgtccataagctgttttcagcttatttt 39539813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 46; Significance: 8e-17; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 272 - 417
Target Start/End: Complemental strand, 27140623 - 27140478
Alignment:
Q  272 gattgacttgtttgagttcatctactgacataaacacttgtaattttagttacgagagtttatggagacagcttattacatgtccataagcctttttcag 371  Q
    ||||||||| | |||| | ||||| ||||||||||| |||||| | |  ||  ||||||||| ||| ||||||||| |||||||||||||   |||||||    
T  27140623 gattgacttatatgagcttatctattgacataaacaattgtaagtctctttgagagagtttaaggaaacagcttatgacatgtccataagttgttttcag 27140524  T
Q  372 cttattttcattaactctccaggatagattagaaaaacaacttata 417  Q
    ||||||| ||| | ||||||| ||||| ||| ||||||| ||||||    
T  27140523 cttatttgcataagctctccatgatagcttataaaaacagcttata 27140478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 337 - 415
Target Start/End: Original strand, 1565525 - 1565603
Alignment:
Q  337 agacagcttattacatgtccataagcctttttcagcttattttcattaactctccaggatagattagaaaaacaactta 415  Q
    ||||||||||| |||||| |||||||  |||||||||||||||||| | |||||||  ||||||||  |||||| ||||    
T  1565525 agacagcttatgacatgtgcataagctgttttcagcttattttcatgagctctccaaaatagattaagaaaacagctta 1565603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 262 - 310
Target Start/End: Original strand, 17631019 - 17631067
Alignment:
Q  262 ggcctatttcgattgacttgtttgagttcatctactgacataaacactt 310  Q
    ||||||||| ||||||| |||||||||| ||||| ||||||||||||||    
T  17631019 ggcctatttggattgacatgtttgagtttatctattgacataaacactt 17631067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 329 - 397
Target Start/End: Complemental strand, 26184836 - 26184768
Alignment:
Q  329 gtttatggagacagcttattacatgtccataagcctttttcagcttattttcattaactctccaggata 397  Q
    ||||| ||| ||||||||| ||||||||||||||  ||||||| |||||| ||| | ||||||||||||    
T  26184836 gtttacggaaacagcttatgacatgtccataagctgttttcagattatttccataagctctccaggata 26184768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 272 - 314
Target Start/End: Complemental strand, 2522741 - 2522699
Alignment:
Q  272 gattgacttgtttgagttcatctactgacataaacacttgtaa 314  Q
    ||||||||| |||||||| |||||||| |||||||||||||||    
T  2522741 gattgacttatttgagtttatctactggcataaacacttgtaa 2522699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 349 - 419
Target Start/End: Complemental strand, 44940408 - 44940339
Alignment:
Q  349 acatgtccataagcctttttcagcttattttcattaactctccaggatagattagaaaaacaacttataac 419  Q
    |||||||||||||  ||||||||||||||| ||  | |||| ||||||||||||  |||||||||||||||    
T  44940408 acatgtccataagt-tttttcagcttatttccacaacctcttcaggatagattatgaaaacaacttataac 44940339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 359 - 429
Target Start/End: Complemental strand, 49938805 - 49938735
Alignment:
Q  359 aagcctttttcagcttattttcattaactctccaggatagattagaaaaacaacttataacatatacaaaa 429  Q
    |||| ||||||| ||||||||||| |  |||| |  |||| ||| ||||||||||||||||||||||||||    
T  49938805 aagcttttttcaacttattttcataagttctctaatatagcttataaaaacaacttataacatatacaaaa 49938735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 365 - 398
Target Start/End: Complemental strand, 601093 - 601060
Alignment:
Q  365 ttttcagcttattttcattaactctccaggatag 398  Q
    |||||||||||||||||| |||||||||||||||    
T  601093 ttttcagcttattttcataaactctccaggatag 601060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 339 - 380
Target Start/End: Original strand, 4202143 - 4202184
Alignment:
Q  339 acagcttattacatgtccataagcctttttcagcttattttc 380  Q
    ||||||||| ||||||||||||||  ||||||||||||||||    
T  4202143 acagcttatgacatgtccataagctattttcagcttattttc 4202184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 365 - 410
Target Start/End: Original strand, 4700084 - 4700129
Alignment:
Q  365 ttttcagcttattttcattaactctccaggatagattagaaaaaca 410  Q
    |||||||||||||||||| | ||||||||||||| ||| |||||||    
T  4700084 ttttcagcttattttcataagctctccaggatagtttataaaaaca 4700129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 339 - 392
Target Start/End: Complemental strand, 6292571 - 6292518
Alignment:
Q  339 acagcttattacatgtccataagcctttttcagcttattttcattaactctcca 392  Q
    ||||||||| |||||| |||||||  |||||||||||||||||| | |||||||    
T  6292571 acagcttatgacatgttcataagctgttttcagcttattttcataagctctcca 6292518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 339 - 417
Target Start/End: Original strand, 28689444 - 28689524
Alignment:
Q  339 acagcttattacatgtccataagcctttttcagcttattttcattaactctccaggatagattaga--aaaacaacttata 417  Q
    ||||||||| |||||||||||||   |||||||||||||||||| | || |||| ||||| ||| |  |||||||||||||    
T  28689444 acagcttatgacatgtccataagttgttttcagcttattttcataagctttccaagatagcttatatgaaaacaacttata 28689524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.00000000000008; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 325 - 429
Target Start/End: Complemental strand, 2996665 - 2996561
Alignment:
Q  325 gagagtttatggagacagcttattacatgtccataagcctttttcagcttattttcattaactctccaggatagattagaaaaacaacttataacatata 424  Q
    ||||| ||||| | ||| ||||| |||||||||||||| ||||||| |||||||||||   ||||||| ||||| |||  ||||||||||||||| ||||    
T  2996665 gagagcttatgaaaacaacttatgacatgtccataagcttttttcaacttattttcatacgctctccaagatagcttatgaaaacaacttataacttata 2996566  T
Q  425 caaaa 429  Q
     ||||    
T  2996565 taaaa 2996561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 343 - 424
Target Start/End: Original strand, 6978958 - 6979039
Alignment:
Q  343 cttattacatgtccataagcctttttcagcttattttcattaactctccaggatagattagaaaaacaacttataacatata 424  Q
    ||||| ||||||| ||||||  |||||||||||||||||| ||||||  ||||| | ||| |||||||||||||| ||||||    
T  6978958 cttatgacatgtctataagctgttttcagcttattttcataaactctttaggatggcttataaaaacaacttatagcatata 6979039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 445 - 487
Target Start/End: Complemental strand, 7342119 - 7342077
Alignment:
Q  445 tgataagcatttacattataagcacttaattaaaatgtttatc 487  Q
    ||||||||||||| | |||||||||||||||||||||||||||    
T  7342119 tgataagcatttatactataagcacttaattaaaatgtttatc 7342077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 342 - 398
Target Start/End: Original strand, 29467619 - 29467675
Alignment:
Q  342 gcttattacatgtccataagcctttttcagcttattttcattaactctccaggatag 398  Q
    |||||| ||||||||||||||  |||||||||||||| ||| ||||||| |||||||    
T  29467619 gcttatgacatgtccataagctgttttcagcttatttccataaactctctaggatag 29467675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 356 - 424
Target Start/End: Complemental strand, 54426104 - 54426036
Alignment:
Q  356 cataagcctttttcagcttattttcattaactctccaggatagattagaaaaacaacttataacatata 424  Q
    ||||||| |||||||  |||||||||| |  ||||||  |||||||| |||||||||||||||||||||    
T  54426104 cataagcttttttcaagttattttcataagttctccaatatagattataaaaacaacttataacatata 54426036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 325 - 392
Target Start/End: Complemental strand, 19305018 - 19304951
Alignment:
Q  325 gagagtttatggagacagcttattacatgtccataagcctttttcagcttattttcattaactctcca 392  Q
    |||| ||| |||| ||||||||| |||||||||||||   |||||||||| ||| |||||||||||||    
T  19305018 gagaatttgtggaaacagcttatgacatgtccataagttgttttcagcttgtttccattaactctcca 19304951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 325 - 398
Target Start/End: Original strand, 6987719 - 6987792
Alignment:
Q  325 gagagtttatggagacagcttattacatgtccataagcctttttcagcttattttcattaactctccaggatag 398  Q
    ||||| ||||||| ||| ||||| |||||||||||| |  |||||| ||||||| ||| | |||||||||||||    
T  6987719 gagagcttatggatacaacttatgacatgtccataaactattttcaacttatttccataagctctccaggatag 6987792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 343 - 424
Target Start/End: Complemental strand, 11264375 - 11264294
Alignment:
Q  343 cttattacatgtccataagcctttttcagcttattttcattaactctccaggatagattagaaaaacaacttataacatata 424  Q
    ||||| |||||||||||| |  |||||| ||||||| ||| | ||||| ||||| | |||  ||||||||||||||||||||    
T  11264375 cttatgacatgtccataaactgttttcaacttatttccataagctctctaggatggcttatgaaaacaacttataacatata 11264294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 348 - 393
Target Start/End: Original strand, 39438539 - 39438584
Alignment:
Q  348 tacatgtccataagcctttttcagcttattttcattaactctccag 393  Q
    ||||||||||||||   |||||| ||||||||||||||||||||||    
T  39438539 tacatgtccataagttgttttcaacttattttcattaactctccag 39438584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 356 - 429
Target Start/End: Complemental strand, 41336821 - 41336748
Alignment:
Q  356 cataagcctttttcagcttattttcattaactctccaggatagattagaaaaacaacttataacatatacaaaa 429  Q
    ||||||| ||||||| ||||||||| | || ||| ||   ||| |||||||||||| |||||||||||||||||    
T  41336821 cataagcttttttcaacttattttcgtaaattcttcaccctagcttagaaaaacaatttataacatatacaaaa 41336748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000005; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 356 - 429
Target Start/End: Original strand, 34430470 - 34430543
Alignment:
Q  356 cataagcctttttcagcttattttcattaactctccaggatagattagaaaaacaacttataacatatacaaaa 429  Q
    ||||||| ||||||||||||||||||| |  |||||| ||||| |||  |||||| ||||||||||||||||||    
T  34430470 cataagcttttttcagcttattttcataacttctccaagatagcttatgaaaacaccttataacatatacaaaa 34430543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 324 - 378
Target Start/End: Original strand, 2034423 - 2034477
Alignment:
Q  324 cgagagtttatggagacagcttattacatgtccataagcctttttcagcttattt 378  Q
    |||||||||||||| ||||||||| |||| |||||||||  ||||||||||||||    
T  2034423 cgagagtttatggaaacagcttatgacatttccataagctgttttcagcttattt 2034477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 356 - 429
Target Start/End: Complemental strand, 6536676 - 6536603
Alignment:
Q  356 cataagcctttttcagcttattttcattaactctccaggatagattagaaaaacaacttataacatatacaaaa 429  Q
    ||||||| ||||||| ||||||||||| || ||||||  |||| ||  |||||||||||||| |||||||||||    
T  6536676 cataagcttttttcaacttattttcataaattctccaatatagcttctaaaaacaacttatagcatatacaaaa 6536603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 325 - 398
Target Start/End: Complemental strand, 34939836 - 34939763
Alignment:
Q  325 gagagtttatggagacagcttattacatgtccataagcctttttcagcttattttcattaactctccaggatag 398  Q
    ||||| ||| ||| ||||||||| ||||||||||||    |||||||||||||| ||| |||||||||||||||    
T  34939836 gagagcttacggaaacagcttatgacatgtccataaattgttttcagcttatttccataaactctccaggatag 34939763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 325 - 378
Target Start/End: Original strand, 2027384 - 2027437
Alignment:
Q  325 gagagtttatggagacagcttattacatgtccataagcctttttcagcttattt 378  Q
    ||||||||||| | ||||||||| |||| |||||||||  ||||||||||||||    
T  2027384 gagagtttatgaaaacagcttatgacatttccataagctgttttcagcttattt 2027437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000005; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 344 - 417
Target Start/End: Original strand, 5284445 - 5284518
Alignment:
Q  344 ttattacatgtccataagcctttttcagcttattttcattaactctccaggatagattagaaaaacaacttata 417  Q
    |||| |||||||||||||| ||||||||||||||||||||| |||| || |||||  ||  |||||||||||||    
T  5284445 ttatgacatgtccataagcttttttcagcttattttcattagctcttcatgatagcctatgaaaacaacttata 5284518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 325 - 389
Target Start/End: Original strand, 11700356 - 11700420
Alignment:
Q  325 gagagtttatggagacagcttattacatgtccataagcctttttcagcttattttcattaactct 389  Q
    ||||||||||||| ||| ||||| ||||||||||||||  ||||||| |||||||||| ||||||    
T  11700356 gagagtttatggaaacaacttatgacatgtccataagctgttttcagattattttcataaactct 11700420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 325 - 417
Target Start/End: Complemental strand, 32172745 - 32172653
Alignment:
Q  325 gagagtttatggagacagcttattacatgtccataagcctttttcagcttattttcattaactctccaggatagattagaaaaacaacttata 417  Q
    ||||| ||||||| ||| ||||| ||||||||||||||| |||||||||||||| |||||  ||| || ||||| |||  |||||| ||||||    
T  32172745 gagagcttatggaaacaacttatgacatgtccataagccattttcagcttatttccattagttcttcatgatagcttatgaaaacagcttata 32172653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 247 - 312
Target Start/End: Original strand, 14706184 - 14706249
Alignment:
Q  247 aattttgaaactataggcctatttcgattgacttgtttgagttcatctactgacataaacacttgt 312  Q
    |||| |||||||| || ||||||| ||||||||| |||||| | | ||||||||||||||||||||    
T  14706184 aattgtgaaactaaagacctatttggattgacttatttgagcttacctactgacataaacacttgt 14706249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 339 - 395
Target Start/End: Complemental strand, 14331445 - 14331389
Alignment:
Q  339 acagcttattacatgtccataagcctttttcagcttattttcattaactctccagga 395  Q
    ||||||||| ||||||||||||||   ||||||||||||||||| | ||||||||||    
T  14331445 acagcttatgacatgtccataagctgatttcagcttattttcataagctctccagga 14331389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 447 - 491
Target Start/End: Original strand, 33348082 - 33348126
Alignment:
Q  447 ataagcatttacattataagcacttaattaaaatgtttatccaaa 491  Q
    ||||||||||||||||||||| |||||||||| | ||||||||||    
T  33348082 ataagcatttacattataagcgcttaattaaactatttatccaaa 33348126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 339 - 415
Target Start/End: Original strand, 40205066 - 40205142
Alignment:
Q  339 acagcttattacatgtccataagcctttttcagcttattttcattaactctccaggatagattagaaaaacaactta 415  Q
    ||||||||| |||||||||||| |  ||||||||||||||  || | ||||||||||||| |||  |||||||||||    
T  40205066 acagcttataacatgtccataatctgttttcagcttatttctataagctctccaggatagcttatgaaaacaactta 40205142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 357 - 429
Target Start/End: Complemental strand, 43300938 - 43300866
Alignment:
Q  357 ataagcctttttcagcttattttcattaactctccaggatagattagaaaaacaacttataacatatacaaaa 429  Q
    |||||| | ||||||||||||||||| |  |||||| ||||| ||| ||||||||||||||  ||||||||||    
T  43300938 ataagcatgtttcagcttattttcataagttctccaagatagcttacaaaaacaacttataggatatacaaaa 43300866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 341 - 416
Target Start/End: Original strand, 17258877 - 17258952
Alignment:
Q  341 agcttattacatgtccataagcctttttcagcttattttcattaactctccaggatagattagaaaaacaacttat 416  Q
    ||||||| |||||| |||||||  |||||||||||||||||| | |||| |||||||| |||  |||||| |||||    
T  17258877 agcttatgacatgttcataagctgttttcagcttattttcataagctcttcaggatagtttatgaaaacagcttat 17258952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 330 - 425
Target Start/End: Original strand, 35445826 - 35445921
Alignment:
Q  330 tttatggagacagcttattacatgtccataagcctttttcagcttattttcattaactctccaggatagattagaaaaacaacttataacatatac 425  Q
    |||||| | ||||||||| |||||| ||| || | |||||| ||||||||||| || |||||| ||||| ||| || |||| |||||||| |||||    
T  35445826 tttatgaaaacagcttataacatgttcattaggcattttcaccttattttcataaattctccaagatagcttacaagaacaccttataacttatac 35445921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 339 - 417
Target Start/End: Complemental strand, 2568736 - 2568658
Alignment:
Q  339 acagcttattacatgtccataagcctttttcagcttattttcattaactctccaggatagattagaaaaacaacttata 417  Q
    ||||||||| |||| | ||||||   |||| ||||||||||||||| ||||||| ||||| |||  |||||||||||||    
T  2568736 acagcttatgacatattcataagttatttttagcttattttcattagctctccatgatagcttatgaaaacaacttata 2568658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 333 - 398
Target Start/End: Original strand, 8177518 - 8177583
Alignment:
Q  333 atggagacagcttattacatgtccataagcctttttcagcttattttcattaactctccaggatag 398  Q
    ||||| ||||||||| | |||||||||||   ||||||| |||||||||| | |||||||||||||    
T  8177518 atggaaacagcttatgatatgtccataagttgttttcaggttattttcataagctctccaggatag 8177583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 325 - 378
Target Start/End: Original strand, 12595694 - 12595747
Alignment:
Q  325 gagagtttatggagacagcttattacatgtccataagcctttttcagcttattt 378  Q
    ||||| ||| ||| |||||||||| ||||| |||||||| ||||||||||||||    
T  12595694 gagagcttaaggaaacagcttattgcatgttcataagccgttttcagcttattt 12595747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 356 - 429
Target Start/End: Original strand, 16937892 - 16937965
Alignment:
Q  356 cataagcctttttcagcttattttcattaactctccaggatagattagaaaaacaacttataacatatacaaaa 429  Q
    ||||||| ||||||||||||||||| | |  ||||||  ||||  || |||||||||||||| |||||||||||    
T  16937892 cataagcttttttcagcttattttcctaagttctccaatatagcgtataaaaacaacttatagcatatacaaaa 16937965  T

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Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 364 - 429
Target Start/End: Complemental strand, 25461144 - 25461079
Alignment:
Q  364 tttttcagcttattttcattaactctccaggatagattagaaaaacaacttataacatatacaaaa 429  Q
    ||||||||||||||||||| |  ||||||  | || |||  |||||||||||||||||||||||||    
T  25461144 tttttcagcttattttcatcagttctccaatagagcttatgaaaacaacttataacatatacaaaa 25461079  T

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Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 326 - 419
Target Start/End: Original strand, 41957430 - 41957523
Alignment:
Q  326 agagtttatggagacagcttattacatgtccataagcctttttcagcttattttcattaactctccaggatagattagaaaaacaacttataac 419  Q
    |||| ||| ||| ||||||||| |||||||||||||   |||||| ||||||||||| |  |||| ||||||| |||  |||||| ||||||||    
T  41957430 agagcttacggaaacagcttatgacatgtccataagttgttttcatcttattttcataagttctcaaggatagcttatgaaaacagcttataac 41957523  T

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Target: chr2 (Bit Score: 37; Significance: 0.00000000002; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 341 - 429
Target Start/End: Complemental strand, 1810740 - 1810653
Alignment:
Q  341 agcttattacatgtccataagcctttttcagcttattttcattaactctccaggatagattagaaaaacaacttataacatatacaaaa 429  Q
    ||||||| ||| ||| |||| | ||||||||||||||||||| |||||| || ||||| ||| ||||||||| |||||| |||||||||    
T  1810740 agcttatgacaggtcaataaacttttttcagcttattttcataaactcttcaagatagcttataaaaacaac-tataacttatacaaaa 1810653  T

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Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 349 - 417
Target Start/End: Complemental strand, 39983410 - 39983342
Alignment:
Q  349 acatgtccataagcctttttcagcttattttcattaactctccaggatagattagaaaaacaacttata 417  Q
    ||||||| ||||||  ||||||| |||||||||||| ||||||||||||| |||  |||||||||||||    
T  39983410 acatgtctataagctattttcagtttattttcattagctctccaggatagcttatgaaaacaacttata 39983342  T

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Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 332 - 402
Target Start/End: Complemental strand, 25790211 - 25790141
Alignment:
Q  332 tatggagacagcttattacatgtccataagcctttttcagcttattttcattaactctccaggatagatta 402  Q
    |||||| |||||||||||||||| | |||||  |||| | ||||||||||| | |||||||||||||||||    
T  25790211 tatggaaacagcttattacatgttcctaagctgttttgaacttattttcataagctctccaggatagatta 25790141  T

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Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 325 - 398
Target Start/End: Complemental strand, 9478391 - 9478318
Alignment:
Q  325 gagagtttatggagacagcttattacatgtccataagcctttttcagcttattttcattaactctccaggatag 398  Q
    ||||||||||| | ||| ||||||||||||||||||||  |||||| |||| || ||| ||||||||| |||||    
T  9478391 gagagtttatgcaaacaacttattacatgtccataagctgttttcatcttacttccatcaactctccacgatag 9478318  T

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Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 334 - 419
Target Start/End: Original strand, 10563545 - 10563630
Alignment:
Q  334 tggagacagcttattacatgtccataagcctttttcagcttattttcattaactctccaggatagattagaaaaacaacttataac 419  Q
    |||| ||||| ||| ||||||||||||||  |||||||||||||||| | | |||| ||| |||| |||  |||||||||||||||    
T  10563545 tggaaacagcctatgacatgtccataagctattttcagcttattttcttaagctcttcagcatagcttatgaaaacaacttataac 10563630  T

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Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 264 - 417
Target Start/End: Complemental strand, 43985362 - 43985209
Alignment:
Q  264 cctatttcgattgacttgtttgagttcatctactgacataaacacttgtaattttagttacgagagtttatggagacagcttattacatgtccataagcc 363  Q
    ||||||| ||| ||||| ||| |||| ||||||||||||||||||||||||   |  ||  ||||| |||  || ||| ||||| ||||||||||||||     
T  43985362 cctatttggatcgacttatttaagtttatctactgacataaacacttgtaaaactgtttgagagagattactgaaacaacttatgacatgtccataagct 43985263  T
Q  364 tttttcagcttattttcattaactctccaggatagattagaaaaacaacttata 417  Q
    ||||||| ||| ||| ||| | |||| || | ||| ||| |||||||| |||||    
T  43985262 tttttcaacttgtttccataagctcttcacggtagcttacaaaaacaaattata 43985209  T

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Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 366 - 425
Target Start/End: Complemental strand, 9478003 - 9477944
Alignment:
Q  366 tttcagcttattttcattaactctccaggatagattagaaaaacaacttataacatatac 425  Q
    ||||| ||||||||||| | ||||||||||||| |||  ||||||||||||||| |||||    
T  9478003 tttcaacttattttcataacctctccaggatagcttatgaaaacaacttataacttatac 9477944  T

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Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 365 - 416
Target Start/End: Original strand, 13630299 - 13630350
Alignment:
Q  365 ttttcagcttattttcattaactctccaggatagattagaaaaacaacttat 416  Q
    |||||| |||||| |||| ||||||| |||||||||||| ||||||||||||    
T  13630299 ttttcaacttattgtcataaactctcaaggatagattaggaaaacaacttat 13630350  T

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Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 356 - 421
Target Start/End: Complemental strand, 12289858 - 12289793
Alignment:
Q  356 cataagcctttttcagcttattttcattaactctccaggatagattagaaaaacaacttataacat 421  Q
    ||||||| ||||||| ||||||||||| |  ||||||  ||| |||| ||||||||||||||||||    
T  12289858 cataagcttttttcaacttattttcataagttctccaatataaattataaaaacaacttataacat 12289793  T

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Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 336 - 417
Target Start/End: Complemental strand, 33942231 - 33942150
Alignment:
Q  336 gagacagcttattacatgtccataagcctttttcagcttattttcattaactctccaggatagattagaaaaacaacttata 417  Q
    |||||| ||||| |||||| |||||||  ||||||||| |||||||||| ||||| | ||| | |||  |||||||||||||    
T  33942231 gagacaacttatgacatgttcataagctgttttcagctaattttcattagctctctatgatggcttatgaaaacaacttata 33942150  T

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Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 356 - 429
Target Start/End: Complemental strand, 41851596 - 41851523
Alignment:
Q  356 cataagcctttttcagcttattttcattaactctccaggatagattagaaaaacaacttataacatatacaaaa 429  Q
    ||||||| ||| |||||||| |||||| || |||||| ||||| ||   ||||||||||||| |||||||||||    
T  41851596 cataagcttttctcagcttaatttcataaattctccaagatagcttctgaaaacaacttatagcatatacaaaa 41851523  T

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Target: chr3 (Bit Score: 34; Significance: 0.000000001; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 364 - 429
Target Start/End: Complemental strand, 33231780 - 33231716
Alignment:
Q  364 tttttcagcttattttcattaactctccaggatagattagaaaaacaacttataacatatacaaaa 429  Q
    |||| ||||||||||||||||  |||||| ||||||||| ||||||||||| || |||||||||||    
T  33231780 ttttccagcttattttcattagttctccaagatagattacaaaaacaactt-taccatatacaaaa 33231716  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 265 - 314
Target Start/End: Original strand, 41848634 - 41848683
Alignment:
Q  265 ctatttcgattgacttgtttgagttcatctactgacataaacacttgtaa 314  Q
    |||||| ||||||||| |||||||| ||||||| ||||||||||||||||    
T  41848634 ctatttagattgacttatttgagtttatctactaacataaacacttgtaa 41848683  T

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Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 326 - 398
Target Start/End: Original strand, 27290880 - 27290952
Alignment:
Q  326 agagtttatggagacagcttattacatgtccataagcctttttcagcttattttcattaactctccaggatag 398  Q
    |||| ||||| | ||||||||| ||||| ||||||||  |||||||||||||| ||| |||||| ||||||||    
T  27290880 agagcttatgaaaacagcttatgacatgcccataagctgttttcagcttatttccatgaactctgcaggatag 27290952  T

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Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 359 - 430
Target Start/End: Complemental strand, 30443951 - 30443880
Alignment:
Q  359 aagcctttttcagcttattttcattaactctccaggatagattagaaaaacaacttataacatatacaaaag 430  Q
    |||| ||||||||||||||||||| |  ||||||  |||| ||| ||||||| |||||| ||||||||||||    
T  30443951 aagcttttttcagcttattttcataagttctccaatatagtttataaaaacagcttatagcatatacaaaag 30443880  T

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Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 262 - 312
Target Start/End: Complemental strand, 22667558 - 22667508
Alignment:
Q  262 ggcctatttcgattgacttgtttgagttcatctactgacataaacacttgt 312  Q
    ||||||||||||||| ||| |||||| | |||||||||||||| |||||||    
T  22667558 ggcctatttcgattggcttatttgagcttatctactgacataagcacttgt 22667508  T

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Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 262 - 312
Target Start/End: Complemental strand, 22724197 - 22724147
Alignment:
Q  262 ggcctatttcgattgacttgtttgagttcatctactgacataaacacttgt 312  Q
    ||||||||||||||| ||| |||||| | |||||||||||||| |||||||    
T  22724197 ggcctatttcgattggcttatttgagcttatctactgacataagcacttgt 22724147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 332 - 398
Target Start/End: Original strand, 30923883 - 30923949
Alignment:
Q  332 tatggagacagcttattacatgtccataagcctttttcagcttattttcattaactctccaggatag 398  Q
    |||||| ||||||||| ||||||| ||||||  ||||||||||||||  || ||||||| |||||||    
T  30923883 tatggaaacagcttatgacatgtctataagctgttttcagcttatttctataaactctctaggatag 30923949  T

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Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 265 - 314
Target Start/End: Original strand, 31337330 - 31337379
Alignment:
Q  265 ctatttcgattgacttgtttgagttcatctactgacataaacacttgtaa 314  Q
    |||||| |||||  ||||||||||| |||||||||||||| |||||||||    
T  31337330 ctatttggattggtttgtttgagtttatctactgacataagcacttgtaa 31337379  T

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Target: scaffold0003 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 331 - 414
Target Start/End: Complemental strand, 306412 - 306329
Alignment:
Q  331 ttatggagacagcttattacatgtccataagcctttttcagcttattttcattaactctccaggatagattagaaaaacaactt 414  Q
    ||||||| ||||||||| ||||| ||||||||  ||||||||||| || ||| | ||||| ||||||| |||  ||||||||||    
T  306412 ttatggaaacagcttatgacatgcccataagctgttttcagcttacttacataagctctctaggatagcttatgaaaacaactt 306329  T

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Target: scaffold0141 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: scaffold0141
Description:

Target: scaffold0141; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 258 - 312
Target Start/End: Original strand, 9689 - 9743
Alignment:
Q  258 tataggcctatttcgattgacttgtttgagttcatctactgacataaacacttgt 312  Q
    ||||||||||||| |||||| || |||||||| ||||||| ||||||| ||||||    
T  9689 tataggcctatttagattgatttatttgagtttatctactaacataaatacttgt 9743  T

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