View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13912_low_20 (Length: 425)
Name: NF13912_low_20
Description: NF13912
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13912_low_20 |
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Alignment Details
Target: chr7 (Bit Score: 283; Significance: 1e-158; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 12 - 409
Target Start/End: Original strand, 23984975 - 23985372
Alignment:
| Q |
12 |
aagaaagtgagatttaaaataacattctatctcatataatgtaaaaatttagttttttactattgcaaagtggcacgtcgtatatggtcagggtttaatc |
111 |
Q |
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| T |
23984975 |
aagaaagtgagatttaaaataatattctatctcatatcatgtgaaaagttagttttttactgttggaaagtggcacgtcgtacgtggtcagggtttaatc |
23985074 |
T |
|
| Q |
112 |
ctcgattcatctaaaaacattattgaaggttaaaagtaaag-ttattttacacaattactattatatagttttctctttatcttttgcgggggtgggttg |
210 |
Q |
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| T |
23985075 |
ctcgattcatctaaaaaaattattgaaggtcaaaagtaaatattattttacacaattactattatataattttctctttatcttttgcggggaagggttg |
23985174 |
T |
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| Q |
211 |
gagaaactaaaactcaccatcaagagtcagagtgaatgagttccaatttctccgacctaacgcaaggatgatcactatattttcttttgggacagccaag |
310 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
23985175 |
gagaaactagaactcaccatcaagagtcagagtgaatgagttccaatttctctgacctaacgcaaggatgatcactatattttcttttgggacagcaaag |
23985274 |
T |
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| Q |
311 |
taaaattgtcttcttatgnnnnnnnnnggtacaatttgtcttcgaatttgtatacttaatttcatactattgaaattgaatgagttgcaggttgaaaac |
409 |
Q |
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|||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23985275 |
taaaattgtcttctcttg-tattttttggtacaatttgtcttcgaatttgtatacttaatttcatactattgaaattgaatgagttgcaggttgaaaac |
23985372 |
T |
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