View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13912_low_23 (Length: 410)
Name: NF13912_low_23
Description: NF13912
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13912_low_23 |
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Alignment Details
Target: chr1 (Bit Score: 299; Significance: 1e-168; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 7 - 407
Target Start/End: Original strand, 6457953 - 6458352
Alignment:
| Q |
7 |
aaaccaacaattacgtccccttaccattcaaatattttacaatttaatcttttttgttaactttccatccaatttaaaataatctttgttatataatgtt |
106 |
Q |
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| T |
6457953 |
aaaccaacaattacgtccccttatcattcaaatattttacaatttaatcttttttgttaactttccatccaatttaaaataatctttgttatataatgtt |
6458052 |
T |
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| Q |
107 |
tttatgaccaaaataacattgtcaaacaaaatgcactaacatctattaccnnnnnnnnnnnnnnnctcttctgatcgatccttttagnnnnnnntaggtt |
206 |
Q |
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| T |
6458053 |
tttatgaccaaaataacattttcaaacaaaatgcactaacatctattaccaaaaaaaaaaaaaatctcttctgatcgatccttttagaaaaaaataggtt |
6458152 |
T |
|
| Q |
207 |
tcacatggaggcaatcctattaaaccattaaaccacggtctcatgttttagtattcaatcaaattaaggtttcggtggtggatatgtgcgatttggggtg |
306 |
Q |
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| T |
6458153 |
tcacatggaggcaatcctattaaaccattaaaccacggtctcattttttagtattcaatcaaattaaggttt-ggtggtggatatgtgtgatttggggtg |
6458251 |
T |
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| Q |
307 |
ggaggaaggagggatggcctggcaatggcgtcgtcggttgtggacttgggaggaggagctgttaggggtgtaggattttacttcacgatatttctttgca |
406 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
6458252 |
ggagaaaggagggatggcctggcaatggcgtcgtcggttgtggacttgggagaaggagctgttaggggtgtaggattttacttcacgatatttccttgca |
6458351 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 326 - 388
Target Start/End: Complemental strand, 3074049 - 3073985
Alignment:
| Q |
326 |
tggcaatggcgtcgtcggttgtggacttgggaggaggagctgttaggg--gtgtaggattttact |
388 |
Q |
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| T |
3074049 |
tggcaatggcgtaggcggttgtgggcctgggaggaggagttgttaggggagtgtaggattttact |
3073985 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 374 - 406
Target Start/End: Complemental strand, 30626592 - 30626560
Alignment:
| Q |
374 |
gtgtaggattttacttcacgatatttctttgca |
406 |
Q |
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|||| |||||||||||||||||||||||||||| |
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| T |
30626592 |
gtgttggattttacttcacgatatttctttgca |
30626560 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 288 - 406
Target Start/End: Original strand, 33276166 - 33276286
Alignment:
| Q |
288 |
atatgtgcgatttggggtgggaggaaggagggatggcctggcaatggcgtcgtcggttgtggacttgggaggaggagctgtt--aggggtgtaggatttt |
385 |
Q |
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| T |
33276166 |
atatgtgtggtttagggtgggaggaaggaggtgcggcttggcagtggcgtcgtcggttgtaggcatgggaggaggaattgttaaaggagtgtaggacttt |
33276265 |
T |
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| Q |
386 |
acttcacgatatttctttgca |
406 |
Q |
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|||||| |||||||||||||| |
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| T |
33276266 |
acttcatgatatttctttgca |
33276286 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 290 - 408
Target Start/End: Complemental strand, 4331561 - 4331441
Alignment:
| Q |
290 |
atgtgcgatttggggtgggaggaaggagggatggcctggcaatggcgtcgtcggttgtggacttgggaggaggagctgttaggg--gtgtaggattttac |
387 |
Q |
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|||||||||||||| ||||||||||||||| |||| ||||| ||| | | ||||||||| | || ||||||||| |||||||| ||| | || ||||| |
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| T |
4331561 |
atgtgcgatttgggatgggaggaaggaggggtggcttggcagtggtggtggcggttgtgggcgtgagaggaggagatgttaggggagtgaatgactttac |
4331462 |
T |
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| Q |
388 |
ttcacgatatttctttgcaga |
408 |
Q |
| |
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|| | |||||| ||||||||| |
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| T |
4331461 |
tttatgatattactttgcaga |
4331441 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 326 - 373
Target Start/End: Original strand, 28993070 - 28993117
Alignment:
| Q |
326 |
tggcaatggcgtcgtcggttgtggacttgggaggaggagctgttaggg |
373 |
Q |
| |
|
||||| |||||||| |||||||||||||||||||||||| |||||||| |
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| T |
28993070 |
tggcagtggcgtcggcggttgtggacttgggaggaggagttgttaggg |
28993117 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 286 - 374
Target Start/End: Original strand, 14852330 - 14852418
Alignment:
| Q |
286 |
ggatatgtgcgatttggggtgggaggaaggagggatggcctggcaatggcgtcgtcggttgtggacttgggaggaggagctgttagggg |
374 |
Q |
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| T |
14852330 |
ggatatgtgcggtttagggtgggaggatggtggggcggcttggcagtggcgccgccggttgtgggttggggaggaggaactgttagggg |
14852418 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 375 - 406
Target Start/End: Original strand, 2987752 - 2987783
Alignment:
| Q |
375 |
tgtaggattttacttcacgatatttctttgca |
406 |
Q |
| |
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|||||||||||||||||||||||||||||||| |
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| T |
2987752 |
tgtaggattttacttcacgatatttctttgca |
2987783 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 374 - 407
Target Start/End: Original strand, 40413560 - 40413593
Alignment:
| Q |
374 |
gtgtaggattttacttcacgatatttctttgcag |
407 |
Q |
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|||||| ||||||||||||||||||||||||||| |
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| T |
40413560 |
gtgtagaattttacttcacgatatttctttgcag |
40413593 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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