View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13912_low_25 (Length: 386)
Name: NF13912_low_25
Description: NF13912
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13912_low_25 |
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Alignment Details
Target: chr4 (Bit Score: 301; Significance: 1e-169; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 18 - 378
Target Start/End: Original strand, 2465213 - 2465573
Alignment:
| Q |
18 |
atgaatcccatcttgatctttgcacaaagtgctgtctacatcaaatgtgcccatattatctgaggaaccaagacaagcgagctaacggtgagagttttcc |
117 |
Q |
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| T |
2465213 |
atgaatcccagcttgatctttgcacaaagtgctatgtacatcaaatgtgcccatattatctgaggaaccaagacaggcgagctaacggtgagagtttgcc |
2465312 |
T |
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| Q |
118 |
ttcatcgcaggtatgagttttctggatttccttgctcagatgccatcttgaaatatgtttatggatacaaatttttacatatgcataaccacaaatcttg |
217 |
Q |
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| T |
2465313 |
ttcatcgcaggtatgagttttctagatttccttgctcggatgtcatattgaaatatgtttctggatacaaatttttacatatgcataaccacaaatcttg |
2465412 |
T |
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| Q |
218 |
caactagctattcttcttatctgaatgcatccttttccactccacataacaaactcctatctatacgaaactattataatttgttacatgattggttcct |
317 |
Q |
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||||||||| ||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2465413 |
caactagcttatcttcttatctgaatgcatccttatctactccacataacaaactcctatctatacgaaactattataatttgttacatgattggttcct |
2465512 |
T |
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| Q |
318 |
tatctctaatagatatttcactgaaaatgtgtagcgcatattgtgttacattttgctcttc |
378 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
2465513 |
tatctctaatagatatttcactgcaaatgtgtagcgcatattgtgttacattttgctcttc |
2465573 |
T |
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