View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13912_low_26 (Length: 365)
Name: NF13912_low_26
Description: NF13912
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13912_low_26 |
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Alignment Details
Target: chr1 (Bit Score: 264; Significance: 1e-147; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 66 - 348
Target Start/End: Complemental strand, 5252455 - 5252170
Alignment:
| Q |
66 |
gaaggatttatgcctaaacgacattagttccccgaaaaaaccaaactcataaattgatgatgatgatgat---aattaaatcccttcttattggatttaa |
162 |
Q |
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| T |
5252455 |
gaaggatttatgcctaaacgacattagttccccgaaaaaaccaaactcataaattgatgatgatgatgatgataattaaatcccttcttattggatttaa |
5252356 |
T |
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| Q |
163 |
ctcatgtccaagatcagaattttattatattgattgatgatgatgattatccctgcattaatctcgtaccgttgaaaaatcaatttgtttatggatctct |
262 |
Q |
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| T |
5252355 |
ctcatgtccaagatcagaattttattatattgattgatgatgatgattatccctgcattaatctcgtaccgttgaaaaatcaatttgtttatggatctct |
5252256 |
T |
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| Q |
263 |
aatcgaccatatgcatgcaaatggattggatgacttcacacatttgtctacctctaaataccaaactcatacattcaagtgttcca |
348 |
Q |
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| T |
5252255 |
aatcgaccatatgcatgcaaatggattggatgacttcacacatttgtccacctctaaatatcaaactcatacattcaagtgttcca |
5252170 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 16 - 51
Target Start/End: Complemental strand, 5252502 - 5252467
Alignment:
| Q |
16 |
atacacgaaccaagatacatatatgtctaaacgaca |
51 |
Q |
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| T |
5252502 |
atacacgaaccaagatacatatatgcctaaacgaca |
5252467 |
T |
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