View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13912_low_28 (Length: 347)
Name: NF13912_low_28
Description: NF13912
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13912_low_28 |
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Alignment Details
Target: chr8 (Bit Score: 116; Significance: 6e-59; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 16 - 183
Target Start/End: Original strand, 8637407 - 8637574
Alignment:
| Q |
16 |
ataaaacagactatgtcaaatgcgctaaattcacttcttgtctcactgaaatttgatggcgataaaaacatttcataggattttgtgtgtaattgacatt |
115 |
Q |
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| T |
8637407 |
ataaaacagactctgtcaaatgcactaaattcacttcttggctcactgaaaagtaatggcgataaaaacatttcataggattttgtgtgtaatcgacatt |
8637506 |
T |
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| Q |
116 |
gttataacactgttaatcgttcacacatcttccactcaaagttattttagaacaattaataactagtt |
183 |
Q |
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| T |
8637507 |
gttataacattgttaatcgttcccacatctttcactggaagttgttttagaacaattaataactagtt |
8637574 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 245 - 330
Target Start/End: Original strand, 8637634 - 8637719
Alignment:
| Q |
245 |
tcctgactaataataaaaataaacaaccaagttcaaatttcacacatgtcactcaaaatggacggcatgccgatgcctatgtgtta |
330 |
Q |
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| T |
8637634 |
tcctgactaataataaaaatagacaaccaagttcaaatttcacacacgtcactcaaaatggacggcatgccgatgcctatgtgtta |
8637719 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 55; Significance: 1e-22; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 78 - 183
Target Start/End: Complemental strand, 3513371 - 3513268
Alignment:
| Q |
78 |
taaaaacatttcataggattttgtgtgtaattgacattgttataacactgttaatcgttcacacatcttccactcaaagttattttagaacaattaataa |
177 |
Q |
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| T |
3513371 |
taaaaaaatgtcataggatt--gtgtgtaattgacattgttattacactgttaatcgttcacacatctttcacttgaagttgttttaaaacaattgatga |
3513274 |
T |
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| Q |
178 |
ctagtt |
183 |
Q |
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|||||| |
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| T |
3513273 |
ctagtt |
3513268 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 252 - 321
Target Start/End: Complemental strand, 3513205 - 3513136
Alignment:
| Q |
252 |
taataataaaaataaacaaccaagttcaaatttcacacatgtcactcaaaatggacggcatgccgatgcc |
321 |
Q |
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|||||||||||||| ||||||||||||||| |||||||| ||||||||||||||| |||||||||||||| |
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| T |
3513205 |
taataataaaaatagacaaccaagttcaaacttcacacacgtcactcaaaatggatggcatgccgatgcc |
3513136 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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