View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13912_low_3 (Length: 723)
Name: NF13912_low_3
Description: NF13912
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13912_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 525; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 525; E-Value: 0
Query Start/End: Original strand, 11 - 705
Target Start/End: Original strand, 40959441 - 40960130
Alignment:
| Q |
11 |
gagtgagaagaatttgaacacttcaatctttcaaaagattgcaacttttgaggaagagttgaagagcctcttgccaaaagaggttgaaagtgcaaggacc |
110 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40959441 |
gagtgagaagaatttgaacacttcaatctttcaaaagattgcaacttttgaggaagagttgaagagcctcttgccaaaagaggttgaaagtgcaaggacc |
40959540 |
T |
|
| Q |
111 |
gcatatgagagtggaaacccaacaattccaaataagatcaagggatgcagatcctatccactttacaaatttgtgagagaggagctaggaactggtttac |
210 |
Q |
| |
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|||||||||||||||||||||||||||||||| |||||||| ||||||||||| |||||||||||||| ||||| ||||||||| | ||||||||||||| |
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| T |
40959541 |
gcatatgagagtggaaacccaacaattccaaacaagatcaatggatgcagatcttatccactttacaagtttgttagagaggagttgggaactggtttac |
40959640 |
T |
|
| Q |
211 |
taaccggagaaaacgtcatttcacccggtgaggagtgtgacaaactattttcagctatgtgtcagggaaaaatcatcgatcctcttcttgaatgtttggg |
310 |
Q |
| |
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|||| |||||||| ||||||||||||||||| | |||||||||| |||| ||||||||||||||||||||||||| ||||||||||||||||| ||||| |
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| T |
40959641 |
taactggagaaaatgtcatttcacccggtgaagtgtgtgacaaattattcacagctatgtgtcagggaaaaatcattgatcctcttcttgaatgcttggg |
40959740 |
T |
|
| Q |
311 |
agagtggaacggtgctcctcttcctatttgttaactttgttggttacttttgaagatgctttatttgttgtattttatacaagtgtatcaaaaatcatta |
410 |
Q |
| |
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|||||||||||||||||||||||| ||||||||||||||||||||| || |||| ||| ||||||||| | |||||||||||| ||| |||||||| |
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| T |
40959741 |
agagtggaacggtgctcctcttccaatttgttaactttgttggttaattctgaaaatgttttatttgta----tctatacaagtgtaacaataatcatta |
40959836 |
T |
|
| Q |
411 |
ggtttttcatgcctttaattaatattgaaaatttcatttcaattttctgcaatattaatgtcaaacttctaatttacttttatggtattgctaatgtgtg |
510 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40959837 |
ggtttttcatgcctttaattaatattgaaaatttcatttaaattttctgcaatattaatgtcaaacttctaatttacttttatggtattgctaatgtgtg |
40959936 |
T |
|
| Q |
511 |
tcctaaggagacttatttannnnnnnggttaccatattatcgatatgaagttttcatacgcaagagtcagagatcgaacctctgattacttgtttatggg |
610 |
Q |
| |
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||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||| |
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|
| T |
40959937 |
tcctaaggagacttatttatttttttggttaccatattatcgatatgaagttttcatatgcaagagtcagagatcgaacctctgattacttgcttatggg |
40960036 |
T |
|
| Q |
611 |
gttcaaatatcttaccactttgatcaatctattgttggaaagtataatttttaaaaatttagtggtattgaagtcacttttcaaaacaatagttt |
705 |
Q |
| |
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| T |
40960037 |
gttcaaatatcttaccacttagatcaatctattgttggaaagtataattttt-taaatttagaggtattgaagtcacttttcaaaacaatagttt |
40960130 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 11 - 428
Target Start/End: Original strand, 40945476 - 40945894
Alignment:
| Q |
11 |
gagtgagaagaatttgaacacttcaatctttcaaaagattgcaacttttgaggaagagttgaagagcctcttgccaaaagaggttgaaagtgcaaggacc |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40945476 |
gagtgagaagaatttgaacacttcaatctttcaaaagattgcaacttttgaggaagagttgaagagcctcttgccaaaagaggttgaaagtgcaaggacc |
40945575 |
T |
|
| Q |
111 |
gcatatgagagtggaaacccaacaattccaaataagatcaagggatgcagatcctatccactttacaaatttgtgagagaggagctaggaactggtttac |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||| ||||||||||| |||||||||||||| ||||| ||||||||| | ||||||||||||| |
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| T |
40945576 |
gcatatgagagtggaaacccaacaattccaaacaagatcaatggatgcagatcttatccactttacaagtttgttagagaggagttgggaactggtttac |
40945675 |
T |
|
| Q |
211 |
taaccggagaaaacgtcatttcacccggtgaggagtgtgacaaactattttcagctatgtgtcagggaaaaatcatcgatcctcttcttgaatgtttggg |
310 |
Q |
| |
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|||| |||||||| ||||||||||||||||| | |||||||||| |||| ||||||||||||||||||||||||| ||||||||||||||||| ||||| |
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| T |
40945676 |
taactggagaaaatgtcatttcacccggtgaagtgtgtgacaaattattcacagctatgtgtcagggaaaaatcattgatcctcttcttgaatgcttggg |
40945775 |
T |
|
| Q |
311 |
agagtggaacggtgctcctcttcctatttgttaactttgttggttacttttgaagatgctttatttgttgtattttatacaagtgtatcaaaaatcat-t |
409 |
Q |
| |
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|||||||||||||||||||||||| ||||||||||||||||||||| || |||| ||||||||||||||||||||||||||||||||||||||||||| | |
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|
| T |
40945776 |
agagtggaacggtgctcctcttccaatttgttaactttgttggttaattatgaaaatgctttatttgttgtattttatacaagtgtatcaaaaatcatgt |
40945875 |
T |
|
| Q |
410 |
aggtttttcatgcctttaa |
428 |
Q |
| |
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|||||||||| |||||||| |
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| T |
40945876 |
aggtttttcaagcctttaa |
40945894 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 74; Significance: 1e-33; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 15 - 344
Target Start/End: Complemental strand, 28183939 - 28183610
Alignment:
| Q |
15 |
gagaagaatttgaacacttcaatctttcaaaagattgcaacttttgaggaagagttgaagagcctcttgccaaaagaggttgaaagtgcaaggaccgcat |
114 |
Q |
| |
|
|||||||||| |||||| |||||||| |||||||||||||| |||||||| || |||||| |||||||||| || ||||||||||||||||| |||| |
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| T |
28183939 |
gagaagaattcgaacacatcaatcttccaaaagattgcaacatttgaggatgaattgaaggctatcttgccaaaggaagttgaaagtgcaaggacagcat |
28183840 |
T |
|
| Q |
115 |
atgagagtggaaacccaacaattccaaataagatcaagggatgcagatcctatccactttacaaatttgtgagagaggagctaggaactggtttactaac |
214 |
Q |
| |
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|||| | |||| | |||| |||| ||||| |||| ||| || || |||||| | ||||| ||||| ||||||||| | ||||| | || ||||| |
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| T |
28183839 |
atgaaaatggacaaagtggaatttcaaacaagattaaggaatgtaggtcttatccattgtacaagtttgttagagaggagttgggaacagcgttgctaac |
28183740 |
T |
|
| Q |
215 |
cggagaaaacgtcatttcacccggtgaggagtgtgacaaactattttcagctatgtgtcagggaaaaatcatcgatcctcttcttgaatgtttgggagag |
314 |
Q |
| |
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||| ||||| || || || || || || ||||| |||||| | || |||||||||| || || ||||| | ||||||||| | |||||| | |||||| |
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| T |
28183739 |
cggtgaaaaagtgatatcgccaggagaagagtgcgacaaattgttcacagctatgtgccaaggtaaaattgttgatcctcttatggaatgtctcggagag |
28183640 |
T |
|
| Q |
315 |
tggaacggtgctcctcttcctatttgttaa |
344 |
Q |
| |
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|||||||| ||||||||||| ||||||||| |
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|
| T |
28183639 |
tggaacggcgctcctcttccaatttgttaa |
28183610 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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