View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13912_low_33 (Length: 318)
Name: NF13912_low_33
Description: NF13912
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13912_low_33 |
 | |
|
| [»] chr3 (1 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 314; Significance: 1e-177; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 1 - 318
Target Start/End: Original strand, 46454535 - 46454852
Alignment:
| Q |
1 |
caagaatatgaggatttacccgaaaactatgtagatacctataaaacagatttaaaatttcctaatcctaatctcaaaagtgcttacatagcactacaag |
100 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46454535 |
caagaaaatgaggatttacccgaaaactatgtagatacctataaaacagatttaaaatttcctaatcctaatctcaaaagtgcttacatagcactacaag |
46454634 |
T |
|
| Q |
101 |
catggaaaaaagcaatttattcagacccaaccaacttcacatcaaattgggagggccctaatgtttgttcttacaatggaattttttgtgcagcttctct |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46454635 |
catggaaaaaagcaatttattcagacccaaccaacttcacatcaaattgggagggccctaatgtttgttcttacaatggaattttttgtgcagcttctct |
46454734 |
T |
|
| Q |
201 |
taatgattcaaaaattcaagttgtagctgggattgatcttaatcaagcagacattgcaggatacattcctgctgagtttggtttgttagctgatattgct |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46454735 |
taatgattcaaaaattcaagttgtagctgggattgatcttaatcaagcagacattgcaggatacattcctgctgagtttggtttgttagctgatattgct |
46454834 |
T |
|
| Q |
301 |
cttttgcatataaactca |
318 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
46454835 |
cttttgcatataaactca |
46454852 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University