View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13912_low_34 (Length: 310)
Name: NF13912_low_34
Description: NF13912
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13912_low_34 |
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Alignment Details
Target: chr1 (Bit Score: 131; Significance: 6e-68; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 64 - 280
Target Start/End: Complemental strand, 37741796 - 37741577
Alignment:
| Q |
64 |
tttgaacaaagacacattcgtataggatttatttannnnnnncttttctgaaaaggccgtataataggaatttttattagtgtttttctcataaacaatt |
163 |
Q |
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| T |
37741796 |
tttgaacaaagacacattcgtataggattttttt----ttttcttttctaaaaaggccgtataataggaatttttattagtgtttttctcataaacaatt |
37741701 |
T |
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| Q |
164 |
gaagagtttcattatcattgttttgg-------gggtggtggtttgtcgtgaaatgagtttcttgtggaatacagtagacannnnnnnnnngctcttcct |
256 |
Q |
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| T |
37741700 |
gaagagtttcattatcattgttttggggatggtgggtggtggtttgtcgtgaaatgagtttcttgtggaatacagtagacattttttttttgctcttcct |
37741601 |
T |
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| Q |
257 |
cacatacttgataatgctagaagc |
280 |
Q |
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| T |
37741600 |
cacatacttgataatgctagaagc |
37741577 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 44; Significance: 5e-16; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 15 - 66
Target Start/End: Complemental strand, 45928256 - 45928205
Alignment:
| Q |
15 |
ttattcttggctttcgtggaataatgctttgtggaaaacagcattttccttt |
66 |
Q |
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| T |
45928256 |
ttattcttagctttcgtggaataatgcttcgtggaaaacagcattttccttt |
45928205 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 15 - 64
Target Start/End: Complemental strand, 9683241 - 9683192
Alignment:
| Q |
15 |
ttattcttggctttcgtggaataatgctttgtggaaaacagcattttcct |
64 |
Q |
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| T |
9683241 |
ttattcttggctttcgtggaacaatgcttcgtggaaaacagcattttcct |
9683192 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 15 - 66
Target Start/End: Complemental strand, 9523438 - 9523387
Alignment:
| Q |
15 |
ttattcttggctttcgtggaataatgctttgtggaaaacagcattttccttt |
66 |
Q |
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| T |
9523438 |
ttattcttggctttcgtggaataatgcttcgtgcaaaacaacattttccttt |
9523387 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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