View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13912_low_38 (Length: 264)

Name: NF13912_low_38
Description: NF13912
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13912_low_38
NF13912_low_38
[»] chr3 (4 HSPs)
chr3 (65-246)||(4547915-4548096)
chr3 (92-246)||(3094872-3095026)
chr3 (92-246)||(3080435-3080589)
chr3 (171-236)||(3102419-3102484)
[»] chr8 (8 HSPs)
chr8 (97-246)||(15813167-15813316)
chr8 (154-246)||(15692659-15692751)
chr8 (100-242)||(15697281-15697423)
chr8 (97-246)||(15799785-15799934)
chr8 (144-246)||(15805364-15805466)
chr8 (139-242)||(15703699-15703802)
chr8 (144-246)||(15764383-15764485)
chr8 (139-242)||(15711988-15712091)
[»] chr2 (2 HSPs)
chr2 (163-244)||(2662479-2662560)
chr2 (166-244)||(2698501-2698579)
[»] chr5 (1 HSPs)
chr5 (163-227)||(27368659-27368723)
[»] chr1 (4 HSPs)
chr1 (163-227)||(6497782-6497846)
chr1 (163-227)||(47771006-47771070)
chr1 (162-227)||(6510735-6510800)
chr1 (163-239)||(6503116-6503192)
[»] scaffold0341 (2 HSPs)
scaffold0341 (162-227)||(12415-12480)
scaffold0341 (163-239)||(4795-4871)
[»] chr4 (2 HSPs)
chr4 (166-239)||(31708228-31708301)
chr4 (163-195)||(47061874-47061906)
[»] chr7 (1 HSPs)
chr7 (172-224)||(20263988-20264040)


Alignment Details
Target: chr3 (Bit Score: 158; Significance: 4e-84; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 65 - 246
Target Start/End: Original strand, 4547915 - 4548096
Alignment:
Q  65 taattacatcttggattgaaagaattgacaaaaataacacatactatgtgcccacaactcttcttgtgttttcttgactttgacctttttcaaatgccct 164  Q
    |||||||||||||  ||||||| ||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||    
T  4547915 taattacatcttgagttgaaaggattgacaaaaataacacatactatgtgcccataattcttcttgtgttttcttgactttgacctttttcaaatgccct 4548014  T
Q  165 tgccaatccaaaatcagatatttttggattcatctcttgatctaagagaacattacttgcttttaggtctctatggattact 246  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  4548015 tgccaatccaaaatcagatatttttggattcatctcttgatctaaaagaacattacttgcttttaggtctctatggattact 4548096  T

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Target: chr3; HSP #2
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 92 - 246
Target Start/End: Complemental strand, 3095026 - 3094872
Alignment:
Q  92 acaaaaataacacatactatgtgcccacaactcttcttgtgttttcttgactttgacctttttcaaatgcccttgccaatccaaaatcagatatttttgg 191  Q
    |||| |||||||||||||||||||| ||||||||||||||||||||||||| |||  |||||||||||||||||||||||||||||||||||||||||||    
T  3095026 acaacaataacacatactatgtgccgacaactcttcttgtgttttcttgacattggtctttttcaaatgcccttgccaatccaaaatcagatatttttgg 3094927  T
Q  192 attcatctcttgatctaagagaacattacttgcttttaggtctctatggattact 246  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3094926 attcatctcttgatctaagagaacattacttgcttttaggtctctatggattact 3094872  T

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Target: chr3; HSP #3
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 92 - 246
Target Start/End: Complemental strand, 3080589 - 3080435
Alignment:
Q  92 acaaaaataacacatactatgtgcccacaactcttcttgtgttttcttgactttgacctttttcaaatgcccttgccaatccaaaatcagatatttttgg 191  Q
    |||| |||||||||||||||||||| ||||||||||||||||||||||||| |||  |||||||||||||||||||||||||||||||||||||||||||    
T  3080589 acaacaataacacatactatgtgccgacaactcttcttgtgttttcttgacattggtctttttcaaatgcccttgccaatccaaaatcagatatttttgg 3080490  T
Q  192 attcatctcttgatctaagagaacattacttgcttttaggtctctatggattact 246  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  3080489 attcatctcttgatctaatagaacattacttgcttttaggtctctatggattact 3080435  T

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Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 171 - 236
Target Start/End: Complemental strand, 3102484 - 3102419
Alignment:
Q  171 tccaaaatcagatatttttggattcatctcttgatctaagagaacattacttgcttttaggtctct 236  Q
    ||||||||| || |||||||||||||| ||||||||||| |||| ||| || ||||| ||||||||    
T  3102484 tccaaaatctgagatttttggattcatttcttgatctaatagaatattgctagctttcaggtctct 3102419  T

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Target: chr8 (Bit Score: 54; Significance: 4e-22; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 97 - 246
Target Start/End: Original strand, 15813167 - 15813316
Alignment:
Q  97 aataacacatactatgtgcccacaactcttcttgtgttttcttgactttgacctttttcaaatgcccttgccaatccaaaatcagatatttttggattca 196  Q
    |||||| | ||||| ||||| | ||||||| |||| |||   |||| |||| ||||||||||||||||||| ||||||||||||||||||||||||||||    
T  15813167 aataacccgtactaggtgccaataactctttttgtctttgtatgacattgatctttttcaaatgcccttgctaatccaaaatcagatatttttggattca 15813266  T
Q  197 tctcttgatctaagagaacattacttgcttttaggtctctatggattact 246  Q
    | || | ||| |  |||||||| || ||||| || ||||| |||||||||    
T  15813267 tttcatcatccagaagaacattgctcgctttcagatctctgtggattact 15813316  T

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Target: chr8; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 154 - 246
Target Start/End: Original strand, 15692659 - 15692751
Alignment:
Q  154 tcaaatgcccttgccaatccaaaatcagatatttttggattcatctcttgatctaagagaacattacttgcttttaggtctctatggattact 246  Q
    |||||||||||||||||||||||||| |||||||| |||||||| || |||||||| |||||||| || ||||| || |||||||| ||||||    
T  15692659 tcaaatgcccttgccaatccaaaatctgatattttgggattcatttcatgatctaatagaacattgctagctttgagatctctatgaattact 15692751  T

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Target: chr8; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 100 - 242
Target Start/End: Original strand, 15697281 - 15697423
Alignment:
Q  100 aacacatactatgtgcccacaactcttcttgtgttttcttgactttgacctttttcaaatgcccttgccaatccaaaatcagatatttttggattcatct 199  Q
    ||||| ||||| ||||| | ||||||| |||| |||   |||||||||||||||||||||  |||||| ||||||||||| |||||||| |||||||| |    
T  15697281 aacacttactaggtgccaataactctttttgtttttgtctgactttgacctttttcaaatttccttgctaatccaaaatctgatattttcggattcattt 15697380  T
Q  200 cttgatctaagagaacattacttgcttttaggtctctatggat 242  Q
    | | ||| |  |||||||| || ||||| || |||||||||||    
T  15697381 catcatccagaagaacattgctggctttcagatctctatggat 15697423  T

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Target: chr8; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 97 - 246
Target Start/End: Original strand, 15799785 - 15799934
Alignment:
Q  97 aataacacatactatgtgcccacaactcttcttgtgttttcttgactttgacctttttcaaatgcccttgccaatccaaaatcagatatttttggattca 196  Q
    |||||||||||||| ||||| | ||||||| |||| |||   |||| |||  |||| |||||||  ||||||||||||||||| ||||||||||||||||    
T  15799785 aataacacatactaggtgccaaaaactctttttgtttttgtctgacattggtctttatcaaatgttcttgccaatccaaaatctgatatttttggattca 15799884  T
Q  197 tctcttgatctaagagaacattacttgcttttaggtctctatggattact 246  Q
    | || | ||| |  |||||||| || ||||| || ||||| |||||||||    
T  15799885 tttcatcatccagaagaacattgctggctttcagatctctgtggattact 15799934  T

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Target: chr8; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 144 - 246
Target Start/End: Original strand, 15805364 - 15805466
Alignment:
Q  144 ttgacctttttcaaatgcccttgccaatccaaaatcagatatttttggattcatctcttgatctaagagaacattacttgcttttaggtctctatggatt 243  Q
    |||| |||||||||||  |||||| ||||||||||| ||||||||||||||||| || | |||||  |||||||| || ||||| || ||||| ||||||    
T  15805364 ttgatctttttcaaatctccttgctaatccaaaatctgatatttttggattcatttcatcatctagaagaacattgctggctttcagatctctgtggatt 15805463  T
Q  244 act 246  Q
    |||    
T  15805464 act 15805466  T

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Target: chr8; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 139 - 242
Target Start/End: Original strand, 15703699 - 15703802
Alignment:
Q  139 tgactttgacctttttcaaatgcccttgccaatccaaaatcagatatttttggattcatctcttgatctaagagaacattacttgcttttaggtctctat 238  Q
    |||||||| ||||| ||||||   ||||||||||||||||| ||||||||||||||||| || | |||||  ||||| || |  ||||| ||||||||||    
T  15703699 tgactttggcctttctcaaattttcttgccaatccaaaatctgatatttttggattcatttcatcatctagaagaacgttgcaggctttaaggtctctat 15703798  T
Q  239 ggat 242  Q
    ||||    
T  15703799 ggat 15703802  T

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Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 144 - 246
Target Start/End: Original strand, 15764383 - 15764485
Alignment:
Q  144 ttgacctttttcaaatgcccttgccaatccaaaatcagatatttttggattcatctcttgatctaagagaacattacttgcttttaggtctctatggatt 243  Q
    |||| |||||||||||| |||||| || |||||||| ||||||||||||||||| || | ||| |  |||||||| || ||||| || || || ||||||    
T  15764383 ttgatctttttcaaatgtccttgctaacccaaaatctgatatttttggattcatttcatcatccagaagaacattgctagctttcagatccctgtggatt 15764482  T
Q  244 act 246  Q
    |||    
T  15764483 act 15764485  T

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Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 139 - 242
Target Start/End: Original strand, 15711988 - 15712091
Alignment:
Q  139 tgactttgacctttttcaaatgcccttgccaatccaaaatcagatatttttggattcatctcttgatctaagagaacattacttgcttttaggtctctat 238  Q
    |||||||| |||||||||||    |||||||||||||| || ||||||||||||||||| || |  || || || ||||| |||||||| |  |||||||    
T  15711988 tgactttggcctttttcaaaccttcttgccaatccaaagtctgatatttttggattcatttcatcgtccaaaagtacattgcttgctttcatatctctat 15712087  T
Q  239 ggat 242  Q
    ||||    
T  15712088 ggat 15712091  T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 163 - 244
Target Start/End: Original strand, 2662479 - 2662560
Alignment:
Q  163 cttgccaatccaaaatcagatatttttggattcatctcttgatctaagagaacattacttgcttttaggtctctatggatta 244  Q
    ||||||| |||||| ||||| |||||||||||||| ||   |||||| |||||||| ||||||||||| |||||||| ||||    
T  2662479 cttgccattccaaagtcagaaatttttggattcatttcgccatctaaaagaacattgcttgcttttagatctctatgaatta 2662560  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 166 - 244
Target Start/End: Original strand, 2698501 - 2698579
Alignment:
Q  166 gccaatccaaaatcagatatttttggattcatctcttgatctaagagaacattacttgcttttaggtctctatggatta 244  Q
    ||||| ||||| |||||||||||||||||||| | || |||||| | ||  |||||||||||||| |||| ||| ||||    
T  2698501 gccaagccaaagtcagatatttttggattcatgttttcatctaacaaaatgttacttgcttttagatctcgatgaatta 2698579  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 163 - 227
Target Start/End: Original strand, 27368659 - 27368723
Alignment:
Q  163 cttgccaatccaaaatcagatatttttggattcatctcttgatctaagagaacattacttgcttt 227  Q
    ||||||||||||||||| ||||| || |||||||||||||  ||||| |||| ||| ||||||||    
T  27368659 cttgccaatccaaaatcggatatcttaggattcatctcttcgtctaaaagaatattgcttgcttt 27368723  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 163 - 227
Target Start/End: Original strand, 6497782 - 6497846
Alignment:
Q  163 cttgccaatccaaaatcagatatttttggattcatctcttgatctaagagaacattacttgcttt 227  Q
    |||||||  |||||||||||||| || |||||||| |||| |||||||||||  |||||||||||    
T  6497782 cttgccatgccaaaatcagatatcttaggattcatttcttcatctaagagaatgttacttgcttt 6497846  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 163 - 227
Target Start/End: Complemental strand, 47771070 - 47771006
Alignment:
Q  163 cttgccaatccaaaatcagatatttttggattcatctcttgatctaagagaacattacttgcttt 227  Q
    ||||||||||||||||||||||| || ||||||||||| |  ||||||||||  || ||||||||    
T  47771070 cttgccaatccaaaatcagatatcttaggattcatctcatcgtctaagagaatgttgcttgcttt 47771006  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 162 - 227
Target Start/End: Original strand, 6510735 - 6510800
Alignment:
Q  162 ccttgccaatccaaaatcagatatttttggattcatctcttgatctaagagaacattacttgcttt 227  Q
    ||||||||  |||||||||| ||| || ||||||||||||| ||| ||||||| ||| ||||||||    
T  6510735 ccttgccatgccaaaatcagctatcttaggattcatctcttcatccaagagaatattgcttgcttt 6510800  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 163 - 239
Target Start/End: Original strand, 6503116 - 6503192
Alignment:
Q  163 cttgccaatccaaaatcagatatttttggattcatctcttgatctaagagaacattacttgcttttaggtctctatg 239  Q
    |||||||  |||||||||| ||| || |||||||| | || ||| ||||||| |||||||||||| || ||||||||    
T  6503116 cttgccatgccaaaatcagctatcttaggattcatatgttcatccaagagaatattacttgctttgagatctctatg 6503192  T

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Target: scaffold0341 (Bit Score: 30; Significance: 0.00000009; HSPs: 2)
Name: scaffold0341
Description:

Target: scaffold0341; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 162 - 227
Target Start/End: Original strand, 12415 - 12480
Alignment:
Q  162 ccttgccaatccaaaatcagatatttttggattcatctcttgatctaagagaacattacttgcttt 227  Q
    ||||||||  |||||||||| ||| || ||||||||||||| ||| ||||||| ||| ||||||||    
T  12415 ccttgccatgccaaaatcagctatcttaggattcatctcttcatccaagagaatattgcttgcttt 12480  T

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Target: scaffold0341; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 163 - 239
Target Start/End: Original strand, 4795 - 4871
Alignment:
Q  163 cttgccaatccaaaatcagatatttttggattcatctcttgatctaagagaacattacttgcttttaggtctctatg 239  Q
    |||||||  |||||||||| ||| || |||||||| | || ||| ||||||| |||||||||||| || ||||||||    
T  4795 cttgccatgccaaaatcagctatcttaggattcatatgttcatccaagagaatattacttgctttgagatctctatg 4871  T

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Target: chr4 (Bit Score: 30; Significance: 0.00000009; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 166 - 239
Target Start/End: Complemental strand, 31708301 - 31708228
Alignment:
Q  166 gccaatccaaaatcagatatttttggattcatctcttgatctaagagaacattacttgcttttaggtctctatg 239  Q
    |||| ||||||||| ||||||||||| |||| ||  ||||| || | ||||||||||||||| || ||||||||    
T  31708301 gccattccaaaatctgatatttttgggttcaacttgtgatccaacaaaacattacttgctttgagatctctatg 31708228  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 163 - 195
Target Start/End: Complemental strand, 47061906 - 47061874
Alignment:
Q  163 cttgccaatccaaaatcagatatttttggattc 195  Q
    |||||||||||||||||||||||||||| ||||    
T  47061906 cttgccaatccaaaatcagatatttttgcattc 47061874  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 172 - 224
Target Start/End: Complemental strand, 20264040 - 20263988
Alignment:
Q  172 ccaaaatcagatatttttggattcatctcttgatctaagagaacattacttgc 224  Q
    ||||| || |||||||||||||||| ||| | |||||| ||||||||||||||    
T  20264040 ccaaagtctgatatttttggattcaactcctcatctaacagaacattacttgc 20263988  T

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