View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13912_low_39 (Length: 263)

Name: NF13912_low_39
Description: NF13912
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13912_low_39
NF13912_low_39
[»] chr5 (5 HSPs)
chr5 (2-247)||(29200648-29200893)
chr5 (39-136)||(29200920-29201017)
chr5 (63-97)||(17535647-17535681)
chr5 (66-94)||(28322270-28322298)
chr5 (57-93)||(39828486-39828522)
[»] chr4 (9 HSPs)
chr4 (2-247)||(12650999-12651244)
chr4 (39-136)||(12650875-12650972)
chr4 (65-94)||(30075646-30075675)
chr4 (55-96)||(31901277-31901318)
chr4 (60-88)||(683075-683103)
chr4 (60-88)||(9988707-9988735)
chr4 (60-96)||(13307900-13307936)
chr4 (60-88)||(19262932-19262960)
chr4 (66-94)||(50699199-50699227)
[»] chr7 (7 HSPs)
chr7 (60-95)||(10893870-10893905)
chr7 (54-113)||(1885590-1885649)
chr7 (54-96)||(6518676-6518718)
chr7 (55-95)||(1745183-1745223)
chr7 (60-88)||(6824240-6824268)
chr7 (60-92)||(10893351-10893383)
chr7 (65-97)||(22636469-22636501)
[»] chr6 (3 HSPs)
chr6 (57-98)||(10033249-10033290)
chr6 (66-95)||(24821702-24821731)
chr6 (65-118)||(32908391-32908444)
[»] chr1 (4 HSPs)
chr1 (55-96)||(50195465-50195506)
chr1 (55-97)||(26777376-26777418)
chr1 (60-96)||(31667448-31667484)
chr1 (60-88)||(32637858-32637886)
[»] chr3 (4 HSPs)
chr3 (60-111)||(21478706-21478757)
chr3 (60-93)||(47678864-47678897)
chr3 (60-88)||(1502597-1502625)
chr3 (61-97)||(1916778-1916814)
[»] scaffold0206 (1 HSPs)
scaffold0206 (54-103)||(9450-9499)
[»] chr8 (4 HSPs)
chr8 (55-96)||(10002163-10002204)
chr8 (60-97)||(31681829-31681866)
chr8 (60-88)||(32691766-32691794)
chr8 (60-96)||(33684884-33684920)
[»] chr2 (3 HSPs)
chr2 (60-97)||(21371795-21371832)
chr2 (66-118)||(35198209-35198261)
chr2 (54-94)||(42665625-42665665)


Alignment Details
Target: chr5 (Bit Score: 238; Significance: 1e-132; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 2 - 247
Target Start/End: Complemental strand, 29200893 - 29200648
Alignment:
Q  2 acgtcgacaacaataacaattagacacaacatgtaggcaacaataacaaaaagaaaatatgacataattgaatgtaatcacatgtgttggtgtcgttttg 101  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29200893 acgttgacaacaataacaattagacacaacatgtaggcaacaataacaaaaagaaaatatgacataattgaatgtaatcacatgtgttggtgtcgttttg 29200794  T
Q  102 gtatcagacaccgacacttctcgaacaccaaacacaatacatcggtaacaataaaaattagacacgacatgtcggcaacaataacaattagacacgacac 201  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  29200793 gtatcagacaccgacacttctcgaacaccaaacacaatacatcggtaacaataacaattagacacgacatgtcggcaacaataacaattagacacgacac 29200694  T
Q  202 gtcacatcacgtcgcaacaataacaattagaaaatatggcacaatt 247  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  29200693 gtcacatcacgtcgcaacaataacaattagaaaatatggcacaatt 29200648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 39 - 136
Target Start/End: Complemental strand, 29201017 - 29200920
Alignment:
Q  39 caacaataacaaaaagaaaatatgacataattgaatgtaatcacatgtgttggtgtcgttttggtatcagacaccgacacttctcgaacaccaaacac 136  Q
    ||||||||||||| |||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||| |||||||||||||    
T  29201017 caacaataacaaatagaaaatatgccataattgaatgtaatcacatgtgttggtgccgttttggtatcagacaccaacacttcttgaacaccaaacac 29200920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 63 - 97
Target Start/End: Original strand, 17535647 - 17535681
Alignment:
Q  63 acataattgaatgtaatcacatgtgttggtgtcgt 97  Q
    |||||||||||| ||||||||||||||||||||||    
T  17535647 acataattgaatataatcacatgtgttggtgtcgt 17535681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 66 - 94
Target Start/End: Original strand, 28322270 - 28322298
Alignment:
Q  66 taattgaatgtaatcacatgtgttggtgt 94  Q
    |||||||||||||||||||||||||||||    
T  28322270 taattgaatgtaatcacatgtgttggtgt 28322298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 57 - 93
Target Start/End: Original strand, 39828486 - 39828522
Alignment:
Q  57 aatatgacataattgaatgtaatcacatgtgttggtg 93  Q
    ||||||| |||||||||||||| ||||||||||||||    
T  39828486 aatatgaaataattgaatgtaaccacatgtgttggtg 39828522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 222; Significance: 1e-122; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 2 - 247
Target Start/End: Original strand, 12650999 - 12651244
Alignment:
Q  2 acgtcgacaacaataacaattagacacaacatgtaggcaacaataacaaaaagaaaatatgacataattgaatgtaatcacatgtgttggtgtcgttttg 101  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  12650999 acgtcgacaacaataacaattagacacaacatgtcggcaacaataacaaaaagaaaatatgtcataattgaatgtaatcacatgtgttggtgtcgttttg 12651098  T
Q  102 gtatcagacaccgacacttctcgaacaccaaacacaatacatcggtaacaataaaaattagacacgacatgtcggcaacaataacaattagacacgacac 201  Q
     ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||    
T  12651099 atatcagacaccgacacttctcgaacaccaaacacaatacatcggtaacaataacaattagacacgacatgtcggcaacaatatcaattagacacgacac 12651198  T
Q  202 gtcacatcacgtcgcaacaataacaattagaaaatatggcacaatt 247  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||    
T  12651199 gtcacatcatgtcgcaacaataacaattagaaaatatggcacaatt 12651244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 39 - 136
Target Start/End: Original strand, 12650875 - 12650972
Alignment:
Q  39 caacaataacaaaaagaaaatatgacataattgaatgtaatcacatgtgttggtgtcgttttggtatcagacaccgacacttctcgaacaccaaacac 136  Q
    ||||||||||||| |||||||||| |||||||||||||||||||||||||||||| | ||||||||||||||||| |||||||| |||||||||||||    
T  12650875 caacaataacaaatagaaaatatgccataattgaatgtaatcacatgtgttggtgccattttggtatcagacaccaacacttcttgaacaccaaacac 12650972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 65 - 94
Target Start/End: Complemental strand, 30075675 - 30075646
Alignment:
Q  65 ataattgaatgtaatcacatgtgttggtgt 94  Q
    ||||||||||||||||||||||||||||||    
T  30075675 ataattgaatgtaatcacatgtgttggtgt 30075646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 55 - 96
Target Start/End: Complemental strand, 31901318 - 31901277
Alignment:
Q  55 aaaatatgacataattgaatgtaatcacatgtgttggtgtcg 96  Q
    |||| ||| |||||||||||||||||||||||| ||||||||    
T  31901318 aaaaaatggcataattgaatgtaatcacatgtgctggtgtcg 31901277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 60 - 88
Target Start/End: Original strand, 683075 - 683103
Alignment:
Q  60 atgacataattgaatgtaatcacatgtgt 88  Q
    |||||||||||||||||||||||||||||    
T  683075 atgacataattgaatgtaatcacatgtgt 683103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 60 - 88
Target Start/End: Complemental strand, 9988735 - 9988707
Alignment:
Q  60 atgacataattgaatgtaatcacatgtgt 88  Q
    |||||||||||||||||||||||||||||    
T  9988735 atgacataattgaatgtaatcacatgtgt 9988707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 60 - 96
Target Start/End: Original strand, 13307900 - 13307936
Alignment:
Q  60 atgacataattgaatgtaatcacatgtgttggtgtcg 96  Q
    ||||||||||| |||||||||||| ||||||||||||    
T  13307900 atgacataattcaatgtaatcacaagtgttggtgtcg 13307936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 60 - 88
Target Start/End: Complemental strand, 19262960 - 19262932
Alignment:
Q  60 atgacataattgaatgtaatcacatgtgt 88  Q
    |||||||||||||||||||||||||||||    
T  19262960 atgacataattgaatgtaatcacatgtgt 19262932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 66 - 94
Target Start/End: Original strand, 50699199 - 50699227
Alignment:
Q  66 taattgaatgtaatcacatgtgttggtgt 94  Q
    |||||||||||||||||||||||||||||    
T  50699199 taattgaatgtaatcacatgtgttggtgt 50699227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 60 - 95
Target Start/End: Complemental strand, 10893905 - 10893870
Alignment:
Q  60 atgacataattgaatgtaatcacatgtgttggtgtc 95  Q
    ||||||||||||||||||||||||||||||||||||    
T  10893905 atgacataattgaatgtaatcacatgtgttggtgtc 10893870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 54 - 113
Target Start/End: Original strand, 1885590 - 1885649
Alignment:
Q  54 gaaaatatgacataattgaatgtaatcacatgtgttggtgtcgttttggtatcagacacc 113  Q
    ||||| ||||||||||| |||||||||||| |||| |||||||| ||||| || ||||||    
T  1885590 gaaaaaatgacataattcaatgtaatcacaagtgtcggtgtcgtgttggtgtcggacacc 1885649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 54 - 96
Target Start/End: Original strand, 6518676 - 6518718
Alignment:
Q  54 gaaaatatgacataattgaatgtaatcacatgtgttggtgtcg 96  Q
    ||||||||||||||||| ||||| |||||||||||| ||||||    
T  6518676 gaaaatatgacataattcaatgtgatcacatgtgtttgtgtcg 6518718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 55 - 95
Target Start/End: Original strand, 1745183 - 1745223
Alignment:
Q  55 aaaatatgacataattgaatgtaatcacatgtgttggtgtc 95  Q
    |||| ||| |||||||||||| |||||||||||||||||||    
T  1745183 aaaaaatggcataattgaatggaatcacatgtgttggtgtc 1745223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 60 - 88
Target Start/End: Original strand, 6824240 - 6824268
Alignment:
Q  60 atgacataattgaatgtaatcacatgtgt 88  Q
    |||||||||||||||||||||||||||||    
T  6824240 atgacataattgaatgtaatcacatgtgt 6824268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 60 - 92
Target Start/End: Complemental strand, 10893383 - 10893351
Alignment:
Q  60 atgacataattgaatgtaatcacatgtgttggt 92  Q
    ||||||||||||||||||||| |||||||||||    
T  10893383 atgacataattgaatgtaatcgcatgtgttggt 10893351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 65 - 97
Target Start/End: Original strand, 22636469 - 22636501
Alignment:
Q  65 ataattgaatgtaatcacatgtgttggtgtcgt 97  Q
    ||||||||||||||||| |||||||||||||||    
T  22636469 ataattgaatgtaatcaaatgtgttggtgtcgt 22636501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.0000000004; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 57 - 98
Target Start/End: Original strand, 10033249 - 10033290
Alignment:
Q  57 aatatgacataattgaatgtaatcacatgtgttggtgtcgtt 98  Q
    ||||||| ||||||||| ||||||||||||||||||||||||    
T  10033249 aatatgaaataattgaaagtaatcacatgtgttggtgtcgtt 10033290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 66 - 95
Target Start/End: Original strand, 24821702 - 24821731
Alignment:
Q  66 taattgaatgtaatcacatgtgttggtgtc 95  Q
    ||||||||||||||||||||||||||||||    
T  24821702 taattgaatgtaatcacatgtgttggtgtc 24821731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 65 - 118
Target Start/End: Original strand, 32908391 - 32908444
Alignment:
Q  65 ataattgaatgtaatcacatgtgttggtgtcgttttggtatcagacaccgacac 118  Q
    |||||||||||||| ||| ||||| |||||| | |||||||||||||| |||||    
T  32908391 ataattgaatgtaaccacgtgtgtcggtgtcatgttggtatcagacacagacac 32908444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000004; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 55 - 96
Target Start/End: Complemental strand, 50195506 - 50195465
Alignment:
Q  55 aaaatatgacataattgaatgtaatcacatgtgttggtgtcg 96  Q
    |||| ||||||||||||||||||||||||||||| |||||||    
T  50195506 aaaaaatgacataattgaatgtaatcacatgtgtcggtgtcg 50195465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 55 - 97
Target Start/End: Complemental strand, 26777418 - 26777376
Alignment:
Q  55 aaaatatgacataattgaatgtaatcacatgtgttggtgtcgt 97  Q
    |||| ||||| ||||||||||||||||||||||| ||||||||    
T  26777418 aaaaaatgacttaattgaatgtaatcacatgtgtgggtgtcgt 26777376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 60 - 96
Target Start/End: Original strand, 31667448 - 31667484
Alignment:
Q  60 atgacataattgaatgtaatcacatgtgttggtgtcg 96  Q
    ||||||||||| ||||||||||||||||| |||||||    
T  31667448 atgacataattaaatgtaatcacatgtgtcggtgtcg 31667484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 60 - 88
Target Start/End: Original strand, 32637858 - 32637886
Alignment:
Q  60 atgacataattgaatgtaatcacatgtgt 88  Q
    |||||||||||||||||||||||||||||    
T  32637858 atgacataattgaatgtaatcacatgtgt 32637886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 32; Significance: 0.000000006; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 60 - 111
Target Start/End: Original strand, 21478706 - 21478757
Alignment:
Q  60 atgacataattgaatgtaatcacatgtgttggtgtcgttttggtatcagaca 111  Q
    ||||||||| | |||||||||| |||||||||||| |||||||| |||||||    
T  21478706 atgacataaatcaatgtaatcatatgtgttggtgttgttttggtgtcagaca 21478757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 60 - 93
Target Start/End: Original strand, 47678864 - 47678897
Alignment:
Q  60 atgacataattgaatgtaatcacatgtgttggtg 93  Q
    |||||||||||||||||||||| |||||||||||    
T  47678864 atgacataattgaatgtaatcatatgtgttggtg 47678897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 60 - 88
Target Start/End: Original strand, 1502597 - 1502625
Alignment:
Q  60 atgacataattgaatgtaatcacatgtgt 88  Q
    |||||||||||||||||||||||||||||    
T  1502597 atgacataattgaatgtaatcacatgtgt 1502625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 61 - 97
Target Start/End: Original strand, 1916778 - 1916814
Alignment:
Q  61 tgacataattgaatgtaatcacatgtgttggtgtcgt 97  Q
    ||||| |||| ||||||||||||||||||||||||||    
T  1916778 tgacaaaatttaatgtaatcacatgtgttggtgtcgt 1916814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0206 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0206
Description:

Target: scaffold0206; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 54 - 103
Target Start/End: Complemental strand, 9499 - 9450
Alignment:
Q  54 gaaaatatgacataattgaatgtaatcacatgtgttggtgtcgttttggt 103  Q
    ||||| |||||||||||||||| |||| ||||||||||||| || |||||    
T  9499 gaaaaaatgacataattgaatgaaatcgcatgtgttggtgttgtgttggt 9450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 30; Significance: 0.00000009; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 55 - 96
Target Start/End: Complemental strand, 10002204 - 10002163
Alignment:
Q  55 aaaatatgacataattgaatgtaatcacatgtgttggtgtcg 96  Q
    |||| ||||||||||| ||||||||||||||||| |||||||    
T  10002204 aaaaaatgacataatttaatgtaatcacatgtgtcggtgtcg 10002163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 60 - 97
Target Start/End: Complemental strand, 31681866 - 31681829
Alignment:
Q  60 atgacataattgaatgtaatcacatgtgttggtgtcgt 97  Q
    |||||||||||||||| |||||||||||| ||||||||    
T  31681866 atgacataattgaatgaaatcacatgtgtcggtgtcgt 31681829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 60 - 88
Target Start/End: Original strand, 32691766 - 32691794
Alignment:
Q  60 atgacataattgaatgtaatcacatgtgt 88  Q
    |||||||||||||||||||||||||||||    
T  32691766 atgacataattgaatgtaatcacatgtgt 32691794  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 60 - 96
Target Start/End: Complemental strand, 33684920 - 33684884
Alignment:
Q  60 atgacataattgaatgtaatcacatgtgttggtgtcg 96  Q
    |||||| ||||||||||||||||||||||| ||||||    
T  33684920 atgacaaaattgaatgtaatcacatgtgttagtgtcg 33684884  T

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Target: chr2 (Bit Score: 30; Significance: 0.00000009; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 60 - 97
Target Start/End: Original strand, 21371795 - 21371832
Alignment:
Q  60 atgacataattgaatgtaatcacatgtgttggtgtcgt 97  Q
    ||||||||||| |||||||||||||||||| |||||||    
T  21371795 atgacataattaaatgtaatcacatgtgtttgtgtcgt 21371832  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 66 - 118
Target Start/End: Complemental strand, 35198261 - 35198209
Alignment:
Q  66 taattgaatgtaatcacatgtgttggtgtcgttttggtatcagacaccgacac 118  Q
    ||||||||||||||||||||||  |||||||| ||| | || |||||||||||    
T  35198261 taattgaatgtaatcacatgtgacggtgtcgtgttgttgtcggacaccgacac 35198209  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 54 - 94
Target Start/End: Original strand, 42665625 - 42665665
Alignment:
Q  54 gaaaatatgacataattgaatgtaatcacatgtgttggtgt 94  Q
    ||||| ||||||| ||| |||||||||||||||||||||||    
T  42665625 gaaaagatgacatgattcaatgtaatcacatgtgttggtgt 42665665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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