View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13912_low_41 (Length: 248)
Name: NF13912_low_41
Description: NF13912
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13912_low_41 |
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Alignment Details
Target: chr4 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 19 - 238
Target Start/End: Complemental strand, 24736016 - 24735794
Alignment:
| Q |
19 |
gtcctcaaggttggaagtaagacaaccctccaaaagcttaatgtcgtgtaccaaaatgattccattgcaatctgcttcttccggtgaacataaaagtgtt |
118 |
Q |
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| T |
24736016 |
gtcctcaaggttggaagtaagacaaccctccaaaagcttaatgtcgtgtaccaaaatgattccattgcaatctgcttcttccggtgaacataaaagtgtt |
24735917 |
T |
|
| Q |
119 |
gattttgttctgcaaatattatctcaacaatatcccaaaaccatgct---atcaaccattccatcccatcatagattgtgtactcaatatgtgcccttgc |
215 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24735916 |
gattttgttctgcaaatattatctcaacaatatcccaaaaccatgctatgatcaaccattccatcccatcatagattgtgtactcaatatgtgcccttgc |
24735817 |
T |
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| Q |
216 |
atgttttgctaattcaccctttg |
238 |
Q |
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||||||||||||||||||||||| |
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| T |
24735816 |
atgttttgctaattcaccctttg |
24735794 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 19 - 180
Target Start/End: Complemental strand, 30456153 - 30455991
Alignment:
| Q |
19 |
gtcctcaaggttggaagtaagacaaccctccaaaagcttaatgtcgtgtaccaaaatgattcc-attgcaatctgcttcttccggtgaacataaaagtgt |
117 |
Q |
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||||||||||||| || |||||| |||||| |||||||||| | ||||||||||||| ||| | ||||||||| |||| || ||||||| | || ||| |
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| T |
30456153 |
gtcctcaaggttgtaaaccagacaagcctccacaagcttaatgccatgtaccaaaatgactcccaatgcaatctgtttctgccagtgaacaaacaaatgt |
30456054 |
T |
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| Q |
118 |
tgattttgttctgcaaatattatctcaacaatatcccaaaaccatgctatcaaccattccatc |
180 |
Q |
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| T |
30456053 |
tgattttgttccacagatactacctccacaatattccaaaaccaagctatcaaccatttcatc |
30455991 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 65 - 209
Target Start/End: Complemental strand, 33329315 - 33329166
Alignment:
| Q |
65 |
tgtaccaaaatgattc-cattgcaatctgcttcttccggtgaacataaaagtgttgattttgttct----gcaaatattatctcaacaatatcccaaaac |
159 |
Q |
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||||||||||||||| || || |||||||| |||||||||| || |||| |||||||||| |||| ||| | | || |||||||||| |||||||| |
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| T |
33329315 |
tgtaccaaaatgattttcaatgtaatctgctgcttccggtgaccaaaaaaatgttgatttttttctttctgcatacactacctcaacaataacccaaaac |
33329216 |
T |
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| Q |
160 |
catgctatcaaccattccatcccatcatagattgtgtactcaatatgtgc |
209 |
Q |
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|| |||||||| ||||||||||||||||| | || |||||| ||||||| |
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| T |
33329215 |
caacctatcaactattccatcccatcatagttagtatactcagtatgtgc |
33329166 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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