View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13912_low_46 (Length: 232)
Name: NF13912_low_46
Description: NF13912
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13912_low_46 |
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Alignment Details
Target: chr3 (Bit Score: 212; Significance: 1e-116; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 216
Target Start/End: Original strand, 37131025 - 37131240
Alignment:
| Q |
1 |
agacagggtaattaggagcaccataattccatgccacaattgcctctactttcttttcctctgtctttcccacaggaccaacactcaccaattctgcatg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37131025 |
agacagggtaattaggagcaccataattccatgccacaattgcctctactttcttttcctctgtctttcccacaggaccaacactcaccaattctgcatg |
37131124 |
T |
|
| Q |
101 |
acagaatttctttcttagcagagatgtgagtctaactgaatctatttgttctcctgttacctctatttgatccttgttttctccttgtatagctgtacct |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37131125 |
acagaatttctttcttagcagagatgtgagtctaactgaatctatttgttctcctgttacctctatttgatccttgttttctccttgtatagctgtacct |
37131224 |
T |
|
| Q |
201 |
tcaactcctgaatatt |
216 |
Q |
| |
|
|| ||||||||||||| |
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|
| T |
37131225 |
tctactcctgaatatt |
37131240 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 29 - 214
Target Start/End: Original strand, 37119331 - 37119516
Alignment:
| Q |
29 |
ccatgccacaattgcctctactttcttttcctctgtctttcccacaggaccaacactcaccaattctgcatgacagaatttctttcttagcagagatgtg |
128 |
Q |
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|
|||||| |||||||||||| |||||||||| ||| ||||| | || ||||||||||||||| ||||||||||||||||||||||| || ||| ||||| |
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| T |
37119331 |
ccatgctacaattgcctcttctttcttttcttctttcttttcaacttcaccaacactcaccaaatctgcatgacagaatttctttctaagtagacatgtg |
37119430 |
T |
|
| Q |
129 |
agtctaactgaatctatttgttctcctgttacctctatttgatccttgttttctccttgtatagctgtaccttcaactcctgaata |
214 |
Q |
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||| || ||| |||||||||||||| ||||||||||||||||||||| | ||||||| || ||||| || ||| ||||||||||| |
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| T |
37119431 |
agtttagctgcgtctatttgttctccagttacctctatttgatccttgctatctccttttacagctgcactttccactcctgaata |
37119516 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 49 - 216
Target Start/End: Complemental strand, 37135323 - 37135156
Alignment:
| Q |
49 |
ctttcttttcctctgtctttcccacaggaccaacactcaccaattctgcatgacagaatttctttcttagcagagatgtgagtctaactgaatctatttg |
148 |
Q |
| |
|
|||||||||||||||||||||| || | ||| ||||||||| ||||||| || ||||||||||||||| ||||||| ||| ||||||| || || | |
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| T |
37135323 |
ctttcttttcctctgtctttcctactgcttcaatactcaccaaatctgcataaccgaatttctttcttagtagagatgccagtttaactgagtcaatctc |
37135224 |
T |
|
| Q |
149 |
ttctcctgttacctctatttgatccttgttttctccttgtatagctgtaccttcaactcctgaatatt |
216 |
Q |
| |
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|||||| ||||| ||||||||||||||||| ||||||| ||||| ||||||||| ||||||||||||| |
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|
| T |
37135223 |
ttctccagttacttctatttgatccttgttatctccttttatagttgtaccttccactcctgaatatt |
37135156 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 101 - 216
Target Start/End: Original strand, 37125064 - 37125179
Alignment:
| Q |
101 |
acagaatttctttcttagcagagatgtgagtctaactgaatctatttgttctcctgttacctctatttgatccttgttttctccttgtatagctgtacct |
200 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||| ||||||| ||||||||| ||||| |||| ||||||| | | |||||||||||||| || | |
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| T |
37125064 |
acagaatttctttcttagcagacatgtgagtctaactgagtctatttattctcctgtaacctccattttatccttgctatgtccttgtatagctgcactt |
37125163 |
T |
|
| Q |
201 |
tcaactcctgaatatt |
216 |
Q |
| |
|
|| |||||| |||||| |
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|
| T |
37125164 |
tccactcctaaatatt |
37125179 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 110; Significance: 1e-55; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 51 - 216
Target Start/End: Complemental strand, 1194083 - 1193918
Alignment:
| Q |
51 |
ttcttttcctctgtctttcccacaggaccaacactcaccaattctgcatgacagaatttctttcttagcagagatgtgagtctaactgaatctatttgtt |
150 |
Q |
| |
|
|||||||||||| ||||| |||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||| |
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| T |
1194083 |
ttcttttcctctttcttttccacttcaccaacactcaccaattctgcatgacagaatttctttcttagcagaaatgtgagtctaactgagtctatttgtt |
1193984 |
T |
|
| Q |
151 |
ctcctgttacctctatttgatccttgttttctccttgtatagctgtaccttcaactcctgaatatt |
216 |
Q |
| |
|
||||||||| |||||||||||||||| | ||||||| |||||||| || ||| ||||||||||||| |
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| T |
1193983 |
ctcctgttatctctatttgatccttgctatctccttttatagctgcactttccactcctgaatatt |
1193918 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 99; Significance: 5e-49; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 54 - 216
Target Start/End: Original strand, 31296961 - 31297123
Alignment:
| Q |
54 |
ttttcctctgtctttcccacaggaccaacactcaccaattctgcatgacagaatttctttcttagcagagatgtgagtctaactgaatctatttgttctc |
153 |
Q |
| |
|
||||||||| ||||| |||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||| ||||||||||||| |
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| T |
31296961 |
ttttcctctttcttttccacttcaccaacactcaccaattctgcatgacataatttctttcttagcagagatgtgactctaactgagtctatttgttctc |
31297060 |
T |
|
| Q |
154 |
ctgttacctctatttgatccttgttttctccttgtatagctgtaccttcaactcctgaatatt |
216 |
Q |
| |
|
|||||| |||||||||||||||| | ||| ||| |||||||| || ||| ||||||||||||| |
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|
| T |
31297061 |
ctgttatctctatttgatccttgctatctgcttttatagctgcactttccactcctgaatatt |
31297123 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 72; Significance: 7e-33; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 49 - 216
Target Start/End: Complemental strand, 20269255 - 20269088
Alignment:
| Q |
49 |
ctttcttttcctctgtctttcccacaggaccaacactcaccaattctgcatgacagaatttctttcttagcagagatgtgagtctaactgaatctatttg |
148 |
Q |
| |
|
|||||||||||||||||||||| || | ||| ||||||||| ||||||| || ||||||||||||||| ||||||| ||| ||||||| || || | |
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| T |
20269255 |
ctttcttttcctctgtctttcctactgcttcaatactcaccaaatctgcataaccgaatttctttcttagtagagatgccagtttaactgagtcaatctc |
20269156 |
T |
|
| Q |
149 |
ttctcctgttacctctatttgatccttgttttctccttgtatagctgtaccttcaactcctgaatatt |
216 |
Q |
| |
|
|||||| ||||| ||||||||||||||||| ||||||| ||||| || |||||| ||||||||||||| |
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|
| T |
20269155 |
ttctccagttacttctatttgatccttgttatctccttttatagttgcaccttccactcctgaatatt |
20269088 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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