View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13912_low_7 (Length: 592)

Name: NF13912_low_7
Description: NF13912
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13912_low_7
NF13912_low_7
[»] chr3 (13 HSPs)
chr3 (155-369)||(6879294-6879508)
chr3 (1-207)||(6897029-6897235)
chr3 (436-567)||(6896876-6897007)
chr3 (188-412)||(6234770-6234992)
chr3 (260-412)||(6852235-6852387)
chr3 (260-373)||(6725151-6725264)
chr3 (199-379)||(6255599-6255777)
chr3 (260-357)||(6411710-6411807)
chr3 (260-416)||(6594441-6594597)
chr3 (180-253)||(6165696-6165769)
chr3 (3-135)||(6879576-6879701)
chr3 (319-372)||(6165635-6165688)
chr3 (487-546)||(6234461-6234521)
[»] scaffold0425 (1 HSPs)
scaffold0425 (260-412)||(14668-14820)
[»] chr7 (1 HSPs)
chr7 (301-369)||(6576048-6576115)


Alignment Details
Target: chr3 (Bit Score: 159; Significance: 2e-84; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 155 - 369
Target Start/End: Complemental strand, 6879508 - 6879294
Alignment:
Q  155 tctatctgtcgccataacatcaaaaagaagcagtggctgtctacaagaattttctcattgttctctgatgtattcatgttatataccaaatagattatct 254  Q
    ||||||||| | |||| ||||||| |||| ||||| ||||||| ||||||||||| ||| |||||||||||||||||||||||||||||||||||||||     
T  6879508 tctatctgttgacatagcatcaaacagaaacagtgactgtctagaagaattttctgatttttctctgatgtattcatgttatataccaaatagattatca 6879409  T
Q  255 ttatcatcatcatcatatgttttgcatagtatacaacttcttgagcctctaatttcagtgcttcattagcacaagttatttaaaactatctcatggcatt 354  Q
     |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||    
T  6879408 atatcatcatcatcatatgttttgcatggtatacaacttcttgagcctctaatttcagtgcttcattagcacaaattatttaaaacaatctcatggcatt 6879309  T
Q  355 cttcattttcaaatt 369  Q
    |||||||||||||||    
T  6879308 cttcattttcaaatt 6879294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 147; E-Value: 3e-77
Query Start/End: Original strand, 1 - 207
Target Start/End: Complemental strand, 6897235 - 6897029
Alignment:
Q  1 cctatggtgatgatatgatctttaactgcgattttcagtttaacatttttacttttagaaagaagcggtcaaaattattattnnnnnnnnnnnnttgaat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||            ||||||    
T  6897235 cctatggtgatgatatgatctttaactgcgattttcagtttaacatttttacttttagaaagaagcggtcaaaattattattaaaaataaaaaattgaat 6897136  T
Q  101 gtcatggtactttgttttcagtgaaatttggtgttataaggaaattctttaggctctatctgtcgccataacatcaaaaagaagcagtggctgtctacaa 200  Q
    |||||||||||||||||||||||||||||| |||| |||| |||||||||||||||||||||| | |||||||||||| |||||||||||||||||||||    
T  6897135 gtcatggtactttgttttcagtgaaatttgttgttttaagcaaattctttaggctctatctgttgacataacatcaaacagaagcagtggctgtctacaa 6897036  T
Q  201 gaatttt 207  Q
    |||||||    
T  6897035 gaatttt 6897029  T

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Target: chr3; HSP #3
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 436 - 567
Target Start/End: Complemental strand, 6897007 - 6896876
Alignment:
Q  436 attcatatttgtcattgttaataggtgagttagactttaacaacatggtgttacatctgatgtgcttgtgtaaacaaaaaagtcctacagcaattagata 535  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||    
T  6897007 attcatatttgtcattgttaataggtgagttagactttaacaacatggtgttacatctgatgtgcttgtgtaaacaaaaaagtcatacggcaattagata 6896908  T
Q  536 tattatttttagccaatcaatattaacactag 567  Q
    ||||||||||||||||||||||||||||||||    
T  6896907 tattatttttagccaatcaatattaacactag 6896876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 188 - 412
Target Start/End: Complemental strand, 6234992 - 6234770
Alignment:
Q  188 tggctgtctacaagaattttctcattgttctctgatgtattcatgttatataccaaatagattatctttatcatcatcatcatatgttttgcatagtata 287  Q
    |||||| || |||||||||||||| | ||||||| | |||||||||||||| ||||| ||||||||         ||||||||| ||||||||||  |||    
T  6234992 tggctggctgcaagaattttctcacttttctctgctatattcatgttatatgccaaacagattatc---------atcatcataggttttgcataacata 6234902  T
Q  288 caacttcttgagcctctaatttcagtgcttcatta-------gcacaagttatttaaaactatctcatggcattcttcattttcaaattttactcattct 380  Q
    || ||||||||||||||||||| ||||||||||||       |||||| ||||||||||| |||| |||| |||||| |||||||||||||||| |||||    
T  6234901 cagcttcttgagcctctaatttaagtgcttcattaattattagcacaaattatttaaaaccatctgatgggattctttattttcaaattttacttattct 6234802  T
Q  381 acctacagatatataagtgttttaaatgttga 412  Q
    |||||  |||||| |||| |||||| ||||||    
T  6234801 acctattgatataaaagtattttaattgttga 6234770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 260 - 412
Target Start/End: Original strand, 6852235 - 6852387
Alignment:
Q  260 atcatcatcatatgttttgcatagtatacaacttcttgagcctctaatttcagtgcttcattagcacaagttatttaaaactatctcatggcattcttca 359  Q
    |||||||||||| ||| ||||||| ||||||||||| || | |||||||||| ||||||||| |||||| |||||||| ||  ||||||||||||||| |    
T  6852235 atcatcatcataagttatgcatagcatacaacttctagaccgtctaatttcattgcttcattggcacaaattatttaataccgtctcatggcattcttta 6852334  T
Q  360 ttttcaaattttactcattctacctacagatatataagtgttttaaatgttga 412  Q
    ||||||| |||||||  ||| |||||  |||||| ||||||||||| ||||||    
T  6852335 ttttcaatttttacttgttccacctattgatataaaagtgttttaattgttga 6852387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 260 - 373
Target Start/End: Original strand, 6725151 - 6725264
Alignment:
Q  260 atcatcatcatatgttttgcatagtatacaacttcttgagcctctaatttcagtgcttcattagcacaagttatttaaaactatctcatggcattcttca 359  Q
    |||||||||||| ||| ||||||  |||||| |||| ||||||||||||||| |||||||||||||||| || ||||| || |||||||||||||||| |    
T  6725151 atcatcatcataagttatgcatatcatacaaattctggagcctctaatttcattgcttcattagcacaaattctttaataccatctcatggcattcttta 6725250  T
Q  360 ttttcaaattttac 373  Q
    ||||||| ||||||    
T  6725251 ttttcaatttttac 6725264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 199 - 379
Target Start/End: Complemental strand, 6255777 - 6255599
Alignment:
Q  199 aagaattttctcattgttctctgatgtattcatgttatataccaaatagattatctttatcatcatcatcatatgttttgcatagtatacaacttcttga 298  Q
    ||||||||||||||| ||||||| | |||||||||||||   ||||||||| |||         ||||||||| ||||||||||  ||||| ||||||||    
T  6255777 aagaattttctcatttttctctgctatattcatgttatacgtcaaatagataatc---------atcatcataagttttgcataacatacagcttcttga 6255687  T
Q  299 gcctctaatttcagtgcttc-------attagcacaagttatttaaaactatctcatggcattcttcattttcaaattttactcattc 379  Q
    ||||||||||| ||||||||       |||||||||| ||||||||||| |||  |||| ||||||||||||||||||||||| ||||    
T  6255686 gcctctaatttaagtgcttcattaattattagcacaaattatttaaaaccatccgatgggattcttcattttcaaattttacttattc 6255599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 260 - 357
Target Start/End: Original strand, 6411710 - 6411807
Alignment:
Q  260 atcatcatcatatgttttgcatagtatacaacttcttgagcctctaatttcagtgcttcattagcacaagttatttaaaactatctcatggcattctt 357  Q
    ||||||| |||| ||| |||||||  |||||||||| ||||||||||||||| |||||||||||||||| || ||||| || ||||||||||||||||    
T  6411710 atcatcaccataagttatgcatagcgtacaacttctagagcctctaatttcattgcttcattagcacaaattctttaataccatctcatggcattctt 6411807  T

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Target: chr3; HSP #9
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 260 - 416
Target Start/End: Original strand, 6594441 - 6594597
Alignment:
Q  260 atcatcatcatatgttttgcatagtatacaacttcttgagcctctaatttcagtgcttcattagcacaagttatttaaaactatctcatggcattcttca 359  Q
    |||||||||||| ||| | ||||  |||||| |||| |||  |||||||||| ||||||||||||| || || ||||| || |||||||||||||||| |    
T  6594441 atcatcatcataagttatccatatcatacaaattctagagtttctaatttcattgcttcattagcaaaaattctttaataccatctcatggcattcttta 6594540  T
Q  360 ttttcaaattttactcattctacctacagatatataagtgttttaaatgttgagatc 416  Q
    ||||||| ||||||  |||| |||||  |||||| || |||||||| ||| ||||||    
T  6594541 ttttcaatttttacgtattccacctattgatataaaactgttttaattgtggagatc 6594597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 180 - 253
Target Start/End: Complemental strand, 6165769 - 6165696
Alignment:
Q  180 agaagcagtggctgtctacaagaattttctcattgttctctgatgtattcatgttatataccaaatagattatc 253  Q
    |||| ||||||||| ||||||||||||||||||| ||||||| | |||||||||||||| ||||||||||||||    
T  6165769 agaaacagtggctgcctacaagaattttctcatttttctctgctatattcatgttatatgccaaatagattatc 6165696  T

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Target: chr3; HSP #11
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 3 - 135
Target Start/End: Complemental strand, 6879701 - 6879576
Alignment:
Q  3 tatggtgatgatatgatctttaactgcgattttcagtttaacatttttacttttagaaagaagcggtcaaaattattattnnnnnnnnnnnnttgaatgt 102  Q
    ||||||| |||||||||||||| ||| |||||||||||| ||||||||| | |||||||||   | |||||||||||||             ||||||||    
T  6879701 tatggtgttgatatgatctttatctgtgattttcagttttacatttttattgttagaaagagctgatcaaaattattat-------aaaaaattgaatgt 6879609  T
Q  103 catggtactttgttttcagtgaaatttggtgtt 135  Q
    ||||| |||||||| ||||||||||||||||||    
T  6879608 catggcactttgttatcagtgaaatttggtgtt 6879576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 319 - 372
Target Start/End: Complemental strand, 6165688 - 6165635
Alignment:
Q  319 attagcacaagttatttaaaactatctcatggcattcttcattttcaaatttta 372  Q
    |||||||||| ||||||||||| ||||||||| |||||| ||||||||||||||    
T  6165688 attagcacaaattatttaaaaccatctcatgggattctttattttcaaatttta 6165635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 487 - 546
Target Start/End: Complemental strand, 6234521 - 6234461
Alignment:
Q  487 tacatctgatgtgcttgtgtaaacaaaaaagtcct-acagcaattagatatattattttta 546  Q
    |||||||||| ||| |||||||||||||||||| | | |||||||||||||||| ||||||    
T  6234521 tacatctgatatgcatgtgtaaacaaaaaagtcttgatagcaattagatatatttttttta 6234461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0425 (Bit Score: 69; Significance: 1e-30; HSPs: 1)
Name: scaffold0425
Description:

Target: scaffold0425; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 260 - 412
Target Start/End: Original strand, 14668 - 14820
Alignment:
Q  260 atcatcatcatatgttttgcatagtatacaacttcttgagcctctaatttcagtgcttcattagcacaagttatttaaaactatctcatggcattcttca 359  Q
    |||||||||||| ||| ||||||| ||||||||||| || | |||||||||| |||||||||||||||| |||||||| ||  ||||||||||||||| |    
T  14668 atcatcatcataagttatgcatagcatacaacttctagaccgtctaatttcattgcttcattagcacaaattatttaataccgtctcatggcattcttta 14767  T
Q  360 ttttcaaattttactcattctacctacagatatataagtgttttaaatgttga 412  Q
    ||||||| |||||||  ||| |||||  |||||| | ||||||||| ||||||    
T  14768 ttttcaatttttacttgttccacctattgatataaacgtgttttaattgttga 14820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 301 - 369
Target Start/End: Original strand, 6576048 - 6576115
Alignment:
Q  301 ctctaatttcagtgcttcattagcacaagttatttaaaactatctcatggcattcttcattttcaaatt 369  Q
    |||||||||||| ||||||||| || || ||||||||||| || | ||| ||||||| |||||||||||    
T  6576048 ctctaatttcagcgcttcattaacagaatttatttaaaac-atttaatgccattctttattttcaaatt 6576115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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