View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13912_low_9 (Length: 569)
Name: NF13912_low_9
Description: NF13912
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13912_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 447; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 447; E-Value: 0
Query Start/End: Original strand, 9 - 551
Target Start/End: Complemental strand, 49461839 - 49461280
Alignment:
| Q |
9 |
atgaaggtttcagcagtttcaacaagatttattgtgttttagcatagttgtcattctatgtgggaagaaggtatgtagaggtctgagtttcttggttcat |
108 |
Q |
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| T |
49461839 |
atgaaggtttcagcagtttcaacaagatttgttgtgttttagcatagttgtcattctatgtgggaagaaggtatgtagaggtctgagtttcttggttcat |
49461740 |
T |
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| Q |
109 |
gtaaaattctctaaatttgtaaagaaaatggtaatgattgaaagatcaatggcttatataaaaatatgatcggtgtgttcccaagtcatagttcaactag |
208 |
Q |
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| T |
49461739 |
gtaaaattctctaaatttgtaaagaaaattgtaatgattgaaagatcaatggcttgtatgaaaatatgatcggtgtgttcccaagtcatagttcaactag |
49461640 |
T |
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| Q |
209 |
caaatgttgaaattgttagactggataccgtgaccca---------------tccctcatttgtttgagttttccattggttattgtcattccatttatc |
293 |
Q |
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| T |
49461639 |
caaatgttgaaattgttagactggataccgtgactcaggttcaaacatgggatccctcagttgtctgagttttcaattggttattgtcattccatttatc |
49461540 |
T |
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| Q |
294 |
tacaaaaagaa--ttgtgatagttgcatgtgatgccaaatctacttgtagattgttatacaactgttgcagtttgtctttattttgttttatcaaacggg |
391 |
Q |
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| T |
49461539 |
tacaaaaaaaaaattgtgatagttgcatttgatgccaaatctacttgtagaatgttatacaactgttgcagtttgtctttattttgttttatcaaacggg |
49461440 |
T |
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| Q |
392 |
tcatcatagattgagtgatcatcggttaaaaatgtatctgcatctttatttgaaaatccggagctcatgcatgattatagattctgggcaataatttatt |
491 |
Q |
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| T |
49461439 |
tcatcatagattgagtgatcatcggttaaaaatgtatctgcatttttatttgaaaatccagagctcatgcatgattatagattctgggcaataatttatt |
49461340 |
T |
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| Q |
492 |
ctcttgttggacttgggaatgtaagtttttgactataaaacttttaagaaagtcgctaga |
551 |
Q |
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| T |
49461339 |
ctcttgttggacttgggaatgtaagtttttgactataaaacttttaagaaagtcgctaga |
49461280 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 63 - 206
Target Start/End: Complemental strand, 42175868 - 42175728
Alignment:
| Q |
63 |
tctatgtgggaagaaggtatgtagaggtctgagtttcttggttcatgtaaaattctctaaatttgtaaagaaaatggtaatgattgaaagatcaatggct |
162 |
Q |
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| T |
42175868 |
tctatgtgggaagaaggtatgtaaag-tcggggtttcctcgtttttgtaaaattctctaaattt--aaagaaaattgtaatgattgaaaaatcaagaact |
42175772 |
T |
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| Q |
163 |
tatataaaaatatgatcggtgtgttcccaagtcatagttcaact |
206 |
Q |
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| T |
42175771 |
tatataaaaatgtgatcgttgctttcacaaatcctagttcaact |
42175728 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 190 - 234
Target Start/End: Original strand, 11011980 - 11012024
Alignment:
| Q |
190 |
caagtcatagttcaactagcaaatgttgaaattgttagactggat |
234 |
Q |
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| T |
11011980 |
caagtcctagctcaactagcaaatgctgaaattgttaggctggat |
11012024 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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