View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13913_low_1 (Length: 508)
Name: NF13913_low_1
Description: NF13913
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13913_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 347; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 144 - 490
Target Start/End: Original strand, 32838148 - 32838494
Alignment:
| Q |
144 |
gcttgtctttttccaattgaactgcaatacccttcatcacaccaactgttgaacggatatcctaaaacaaacccagaaaaatgtaacacaataagtgata |
243 |
Q |
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| T |
32838148 |
gcttgtctttttccaattgaactgcaatacccttcatcacaccaactgttgaacggatatcctaaaacaaacccagaaaaatgtaacacaataagtgata |
32838247 |
T |
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| Q |
244 |
aacaaaatgattgaatttatttacaaacacgaaaaaatgctcctttgattaaaggataccctaaaaaagaagggtttgagagtttacagagatgataggt |
343 |
Q |
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| T |
32838248 |
aacaaaatgattgaatttatttacaaacacgaaaaaatgctcctttgattaaaggataccctaaaaaagaagggtttgagagtttacagagatgataggt |
32838347 |
T |
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| Q |
344 |
tgaatatcagtgccgtaagtggaagttaagttctttatccgaccagaaacgccgccgtgtgaacttgacgccatgaatctccggtggattggtgctctga |
443 |
Q |
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| T |
32838348 |
tgaatatcagtgccgtaagtggaagttaagttctttatccgaccagaaacgccgccgtgtgaacttgacgccatgaatctccggtggattggtgctctga |
32838447 |
T |
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| Q |
444 |
gagctccgcgaaaggggaattttggagggagataggaaggttagaac |
490 |
Q |
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| T |
32838448 |
gagctccgcgaaaggggaattttggagggagataggaaggttagaac |
32838494 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 17 - 66
Target Start/End: Original strand, 32838020 - 32838069
Alignment:
| Q |
17 |
cataggctaaaatggtttttattgttcgctcatcacatgaccaatattac |
66 |
Q |
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| T |
32838020 |
cataggctaaaatggtttttattgttcactcatcacatgaccaatattac |
32838069 |
T |
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