View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13913_low_2 (Length: 459)
Name: NF13913_low_2
Description: NF13913
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13913_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 355; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 11 - 444
Target Start/End: Complemental strand, 9443443 - 9443006
Alignment:
| Q |
11 |
aatatagtaatgcatgtttgatatcacagtgtgttacataattttgcaaaagttacacgcaaatttgctatttgaatgacaaaacaaaatacaagtgtgc |
110 |
Q |
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| T |
9443443 |
aatatagtaatgcatgtttgatatcacagtgtgttacgtaattttgcaaaagttacacgcaaatttgctatttgaatgacaaaacaaaatacaagtgtgc |
9443344 |
T |
|
| Q |
111 |
tatcaccatcatcgtgagccactgtgattttgcaaaagctacactgcgaagtttgtctcattttaataaaacagtaaagaagtnnnnnnnnnnnnnnnnn |
210 |
Q |
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| T |
9443343 |
tatcaccatcaccgtgagccactgtgattttgcaaaagctacactgcgaagtttgcctcattttaataaaacagtaaagaagtaaaaaaaaatatatata |
9443244 |
T |
|
| Q |
211 |
n----taacctcatgcttagcttcttgcttaacagcttcccaaatagggtcagacacgtctaagatggattcaggatccgggtcaggtaaacccatagca |
306 |
Q |
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| T |
9443243 |
tatattaacctcatgcttagcttcttgcttaacagcttcccaaatagggtcagacacgtctaagatggattcaggatccgggtcaggtaaacccatagca |
9443144 |
T |
|
| Q |
307 |
taaacaggaaaaactttttcaagacggtaggaagaagagagagggaagcgtttctcagagaccatgttggagagattaagccaattgtgatgagtcacac |
406 |
Q |
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| T |
9443143 |
taaacaggaaaaactttttcaagacggtaggaagaagagagagggaagcgtttctcagagaccatgttggagagattaagccaattgtgatgagtcacac |
9443044 |
T |
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| Q |
407 |
aagccatgcgagtacttaataagaagaagagaaagagt |
444 |
Q |
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| T |
9443043 |
aagccatgcgagtacttaataagaagaagagaaagagt |
9443006 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 125 - 154
Target Start/End: Original strand, 35069152 - 35069181
Alignment:
| Q |
125 |
tgagccactgtgattttgcaaaagctacac |
154 |
Q |
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| T |
35069152 |
tgagccactgtgattttgcaaaagctacac |
35069181 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 119 - 155
Target Start/End: Original strand, 51617345 - 51617381
Alignment:
| Q |
119 |
tcatcgtgagccactgtgattttgcaaaagctacact |
155 |
Q |
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| T |
51617345 |
tcatcgttagccagtgtgattttgcaaaagctacact |
51617381 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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