View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13914_high_14 (Length: 276)
Name: NF13914_high_14
Description: NF13914
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13914_high_14 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 240; Significance: 1e-133; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 20 - 271
Target Start/End: Complemental strand, 45113470 - 45113219
Alignment:
| Q |
20 |
tagggcataaaagtttagagatgcatacttgagcgatgatagtaatgccaagagttgaattgccaaacggcaatatgctagtgctggtgacaaataaatg |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
45113470 |
tagggcataaaagtttagagatgcatacttgagcgatgatagtaatgccaagagttgaattgccaaacggcaatatgctagtgctggtgacaaacaaatg |
45113371 |
T |
|
| Q |
120 |
aagattttgaagcatgtccaatattttgtgttgaatgccattttccttctcacaattgatgtaaatgagtatattattctccaacactttcactttgaca |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45113370 |
aagattttgaagcatgtccaatattttgtgttgaatgccattttccttctcacaattgatgtaaatgagtatattattctccaacactttcactttgaca |
45113271 |
T |
|
| Q |
220 |
tcaggaagaaaatcatttattggtctaagataattgtcaagattcatctcac |
271 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
45113270 |
tcaggaagaaaattatttattggtctaagataattgtcaagattcatttcac |
45113219 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 28 - 271
Target Start/End: Complemental strand, 45124742 - 45124502
Alignment:
| Q |
28 |
aaaagtttagagatgcatacttgagcgatgatagtaatgccaagagttgaattgccaaacggcaatatgctagtgctggtgacaaataaatgaagatttt |
127 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||| |
|
|
| T |
45124742 |
aaaagtttagagatgcatacttgagcgatgatagttatggcaagagttgaattgccaaacggcaatacgctagtgctggtgacaaacaaatgaagatttt |
45124643 |
T |
|
| Q |
128 |
gaagcatgtccaatattttgtgttgaatgccattttccttctcacaattgatgtaaatgagtatattattctccaacactttcactttgacatcaggaag |
227 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||| ||||| |
|
|
| T |
45124642 |
gaagcatgtccaatattttgtgttgaatgccattttccttctcacaattgatataaatgagtatattattctccgacactttcactttgacatctggaag |
45124543 |
T |
|
| Q |
228 |
aaaatcatttattggtctaagataattgtcaagattcatctcac |
271 |
Q |
| |
|
|| |||| ||||||||| | |||||||||||||||| |||| |
|
|
| T |
45124542 |
caattcat---ttggtctaaaacaattgtcaagattcatttcac |
45124502 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 117 - 224
Target Start/End: Complemental strand, 45105921 - 45105814
Alignment:
| Q |
117 |
atgaagattttgaagcatgtccaatattttgtgttgaatgccattttccttctcacaattgatgtaaatgagtatattattctccaacactttcactttg |
216 |
Q |
| |
|
||||||||||| ||||| | |||||||||| | ||||||||||||||||||||||| ||| | |||||||| | ||| ||||||||| | ||||| |
|
|
| T |
45105921 |
atgaagattttcaagcaaattcaatattttgatctcaatgccattttccttctcacaatggatctcaatgagtacttcattttccaacactcttgctttg |
45105822 |
T |
|
| Q |
217 |
acatcagg |
224 |
Q |
| |
|
|||||||| |
|
|
| T |
45105821 |
acatcagg |
45105814 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University