View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13914_high_15 (Length: 272)
Name: NF13914_high_15
Description: NF13914
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13914_high_15 |
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| [»] chr7 (4 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 234; Significance: 1e-129; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 6 - 272
Target Start/End: Complemental strand, 31202055 - 31201789
Alignment:
| Q |
6 |
taatactagaattcaaaattaagtattataacttaataataacacagcaataagagtaaaaaattattacaacaataagaagaggaataatgagattcaa |
105 |
Q |
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| T |
31202055 |
taataatagaattcaaaattaagtattataacttaataataacacaacaataagagtaaaaaattattacaacaataagaagaggaataatgagattcaa |
31201956 |
T |
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| Q |
106 |
gatgacatataccatcacttgttaattgtcgctaaaagttatagtataataatgaatcaacagcaataataacaataaatttgtcnnnnnnntaataatc |
205 |
Q |
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| T |
31201955 |
gatgacatataccatcacttgttaattgtcgctaaaagttatagtataataatgaatcaacagcaataataacaataaatttgtcaaaaaaataataatc |
31201856 |
T |
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| Q |
206 |
agaatattaagaatgataccctgattgttttgttaccaatggttatggtactgctgaagtctctatc |
272 |
Q |
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| T |
31201855 |
agaatattaagaatgataccctgattgtttggttaccaatggttatggtactgctgaagtctctatc |
31201789 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 148 - 269
Target Start/End: Original strand, 31063256 - 31063376
Alignment:
| Q |
148 |
agtataataatgaatcaacagcaataata--acaataaatttgtcnnnnnnntaataatcagaatattaagaatgataccctgattgttttgttaccaat |
245 |
Q |
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| T |
31063256 |
agtataataataaattaacagcaataatatcacaataaatatgtcaaaaagaaaaaaatcagaatattaagaat---accctaattatttggtcaccaat |
31063352 |
T |
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| Q |
246 |
ggttatggtactgctgaagtctct |
269 |
Q |
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| T |
31063353 |
ggttatggtactgctgaagtctct |
31063376 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 222 - 272
Target Start/End: Original strand, 31050864 - 31050914
Alignment:
| Q |
222 |
taccctgattgttttgttaccaatggttatggtactgctgaagtctctatc |
272 |
Q |
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| T |
31050864 |
taccgtgactgttttgttaccaatggttatagtactgctgaagtctctatc |
31050914 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 211 - 269
Target Start/End: Original strand, 31108405 - 31108463
Alignment:
| Q |
211 |
attaagaatgataccctgattgttttgttaccaatggttatggtactgctgaagtctct |
269 |
Q |
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| T |
31108405 |
attaaggataataccgtgagtgttttgttaccaatggtcatgacactgctgaagtctct |
31108463 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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