View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13914_high_21 (Length: 229)
Name: NF13914_high_21
Description: NF13914
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13914_high_21 |
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Alignment Details
Target: chr5 (Bit Score: 176; Significance: 6e-95; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 17 - 212
Target Start/End: Original strand, 38399910 - 38400105
Alignment:
| Q |
17 |
caaagggcggttataaacaatgctgccattttgaccaagtgagttacaaggaccagtaaaccagcagataccataacatatgatgacaaatccattgaaa |
116 |
Q |
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|||||||| |||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
38399910 |
caaagggcagttataaataatgctgccattttgaccaagtgagttgcaaggaccagtaaaccagcagataccataacatatgatgacatatccattgaaa |
38400009 |
T |
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| Q |
117 |
aatccgctttaaacacacaagtagttacaaagataggcaaaaataatgttgtaccaaagaactgaagcttcttaaccaatgcagatcctaaaggag |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
38400010 |
aatccgctttaaacacacaagtagttacaaagataggcaaaaataatgttgtaccaaagaactgaagcttcttaaccaatgcagatcctagaggag |
38400105 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 17 - 212
Target Start/End: Original strand, 38382463 - 38382658
Alignment:
| Q |
17 |
caaagggcggttataaacaatgctgccattttgaccaagtgagttacaaggaccagtaaaccagcagataccataacatatgatgacaaatccattgaaa |
116 |
Q |
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|||||||| |||||||| |||||| |||||||||||||||||||||||||||| |||||||| | | ||||||||| ||||||| | ||||||||||| |
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| T |
38382463 |
caaagggcagttataaagcatgctgtcattttgaccaagtgagttacaaggaccgctaaaccagtatacaccataacagatgatgaaacatccattgaaa |
38382562 |
T |
|
| Q |
117 |
aatccgctttaaacacacaagtagttacaaagataggcaaaaataatgttgtaccaaagaactgaagcttcttaaccaatgcagatcctaaaggag |
212 |
Q |
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|||| ||||| ||||||||||| ||||||||||| |||||||| |||||||||| ||| ||||||||||||||||||||||||||||||||||||| |
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| T |
38382563 |
aatctgctttcaacacacaagtggttacaaagattggcaaaaagaatgttgtacaaaaaaactgaagcttcttaaccaatgcagatcctaaaggag |
38382658 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 17 - 212
Target Start/End: Original strand, 38391321 - 38391516
Alignment:
| Q |
17 |
caaagggcggttataaacaatgctgccattttgaccaagtgagttacaaggaccagtaaaccagcagataccataacatatgatgacaaatccattgaaa |
116 |
Q |
| |
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|||||| | |||||||| |||||||||||||||||||||||||||||||||||| |||||||| | | ||||| | | ||||||| ||||||||||||| |
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| T |
38391321 |
caaaggacagttataaataatgctgccattttgaccaagtgagttacaaggaccgctaaaccagtatacaccatcatagatgatgaaaaatccattgaaa |
38391420 |
T |
|
| Q |
117 |
aatccgctttaaacacacaagtagttacaaagataggcaaaaataatgttgtaccaaagaactgaagcttcttaaccaatgcagatcctaaaggag |
212 |
Q |
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|||| ||||| ||||||||||| ||||||||||| |||||||| |||||||||| ||| ||||||||||||||||||||||||||||||||||||| |
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| T |
38391421 |
aatctgctttcaacacacaagttgttacaaagattggcaaaaagaatgttgtactaaaaaactgaagcttcttaaccaatgcagatcctaaaggag |
38391516 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 120; Significance: 2e-61; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 17 - 212
Target Start/End: Complemental strand, 37840171 - 37839976
Alignment:
| Q |
17 |
caaagggcggttataaacaatgctgccattttgaccaagtgagttacaaggaccagtaaaccagcagataccataacatatgatgacaaatccattgaaa |
116 |
Q |
| |
|
||||| || |||||||| |||||| ||||||||||| |||| || | ||||||| ||||||| ||| ||||||| |||||||| |||||||||||||| |
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| T |
37840171 |
caaagagcagttataaaacatgctgtcattttgaccatgtgaattgctaggaccactaaaccattagacaccataatatatgatgtcaaatccattgaaa |
37840072 |
T |
|
| Q |
117 |
aatccgctttaaacacacaagtagttacaaagataggcaaaaataatgttgtaccaaagaactgaagcttcttaaccaatgcagatcctaaaggag |
212 |
Q |
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|||| ||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
37840071 |
aatcagctttcaacacacaagtagttacaaagataggcaaaaagaatgttgtaccaaagaactgaagcttcttaaccaatgtagatcctaaaggag |
37839976 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 131 - 212
Target Start/End: Complemental strand, 37831920 - 37831839
Alignment:
| Q |
131 |
acacaagtagttacaaagataggcaaaaataatgttgtaccaaagaactgaagcttcttaaccaatgcagatcctaaaggag |
212 |
Q |
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||||| |||| ||||||||||| ||||||||||||| ||||||||||||||||||||||||||| ||||| |||||||| |
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| T |
37831920 |
acacaggtagatacaaagatagaaaaaaataatgttggaccaaagaactgaagcttcttaaccaacacagatgttaaaggag |
37831839 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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