View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13914_high_23 (Length: 228)
Name: NF13914_high_23
Description: NF13914
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13914_high_23 |
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Alignment Details
Target: chr8 (Bit Score: 60; Significance: 1e-25; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 96
Target Start/End: Original strand, 10331597 - 10331692
Alignment:
| Q |
1 |
tttcttaatttccacctatgttacaatttatgtaccgtaactcttcgttcacaatcagacatgattctttcctgctatcatttggtctcaaacaag |
96 |
Q |
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| T |
10331597 |
tttcttgattttcacctatgttacaattcatgtgctgtaattcttcgttcacaatcagacatgattctttcctgcaatcattttatctcaaacaag |
10331692 |
T |
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Target: chr8; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 157 - 212
Target Start/End: Original strand, 10331753 - 10331808
Alignment:
| Q |
157 |
ctagaaggaaaaatagaactgatatgcaagggatatcttttcgacataagccttct |
212 |
Q |
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| T |
10331753 |
ctagaaggaaaaatagaactgctatgcaagggatatcttttcgacataagccttct |
10331808 |
T |
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Target: chr6 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 9 - 73
Target Start/End: Complemental strand, 24981033 - 24980969
Alignment:
| Q |
9 |
tttccacctatgttacaatttatgtaccgtaactcttcgttcacaatcagacatgattctttcct |
73 |
Q |
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| T |
24981033 |
tttccacctatgttacaatatatgtgttgtaattcttcgttcacaatcagacatgactctttcct |
24980969 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 159 - 212
Target Start/End: Original strand, 19296840 - 19296893
Alignment:
| Q |
159 |
agaaggaaaaatagaactgatatgcaagggatatcttttcgacataagccttct |
212 |
Q |
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| T |
19296840 |
agaaggaaaaatagaactgataggcaagagagatcctttcgacacaagccttct |
19296893 |
T |
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