View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13914_high_6 (Length: 461)
Name: NF13914_high_6
Description: NF13914
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13914_high_6 |
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Alignment Details
Target: chr5 (Bit Score: 394; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 394; E-Value: 0
Query Start/End: Original strand, 7 - 443
Target Start/End: Original strand, 37510484 - 37510921
Alignment:
| Q |
7 |
gattatactctttggtcaaatcaatggaaaaaacacggtctatgttcctatccaacatttgatatacatcaatacttctcggttgcattatataattggg |
106 |
Q |
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| T |
37510484 |
gattatactctttggtcaaatcaatggaaaaaacacggtctatgttcctatccaacatttgatatacatcaatacttctcggttgcattatataattggg |
37510583 |
T |
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| Q |
107 |
gaagtcgcaatcttagagatgatcttggacgctatggtattaggcctctagcatatacccttgaagcaatagaaaaaagtgttggctttacacctcaact |
206 |
Q |
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| T |
37510584 |
gaagtcgcaatcttacagatgatcttggacgctatggtattaggcctctagcatatacccttgaagcaatagaaaaaagtgttggctttacacctcaact |
37510683 |
T |
|
| Q |
207 |
tatttgcagcaatgaaactacattttggacttccgaattgctagaaatccgtctttgtcacgagagaaatggaatcgacctcaaaaattgtacacgacaa |
306 |
Q |
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| T |
37510684 |
tatttgcagcaatgaaactacattttggacttctgaattgctagaaatccgtctttgtcacgagagaaatggaatcgacctcaaaaattgtacacgacaa |
37510783 |
T |
|
| Q |
307 |
catggttgtccgtcaaatttttattagttgccataacgaggagctgg-nnnnnnnnttccataggtcggcattttttgaaggaaataaaatttagttttt |
405 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37510784 |
catggttgtccgtcaaatttttattggttgccataacgaggagctggaaaaaaaaattccataggtcggcattttttgaaggaaataaaatttagttttt |
37510883 |
T |
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| Q |
406 |
ggttgatatattgattagtaaaagtaaaataaaactct |
443 |
Q |
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| T |
37510884 |
ggttgatatattgattagtaaaagtaaaataaaactct |
37510921 |
T |
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