View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13914_high_9 (Length: 417)
Name: NF13914_high_9
Description: NF13914
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13914_high_9 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 258; Significance: 1e-143; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 156 - 417
Target Start/End: Complemental strand, 9587306 - 9587045
Alignment:
| Q |
156 |
gggaatgagaatcggcaggtaggatgcaaagtccaaaaagaagatgttgattgggcaatatctaaggagtgtatgtgggggaagaaggcacgagcatgtc |
255 |
Q |
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| T |
9587306 |
gggaatgagaatcggcaggtaggatgcaaagtccaaaaagaagatgttgattgggcaatatctaaggagtgtatgtgggggaagaaggcacgagcatatc |
9587207 |
T |
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| Q |
256 |
tctgcattttttatgtactaagaggctaaagcaatcctaaagcagaaaaggactagaagaaatggacaaaggaatgtaggaagtagcacatggaagggtg |
355 |
Q |
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| T |
9587206 |
tctgcattttttatgtactaagaggctaaagcaatcctaaagcagaaaaggactagaagaaatggacaaaggaatgtaggaagtagcacatggaagggtg |
9587107 |
T |
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| Q |
356 |
tgtttggaggaataataagtctgagtgatgctctgccaacatgtcccttaacccctcttcaa |
417 |
Q |
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| T |
9587106 |
tgtttggaggaataataagtctgagtgatgctctgccaacatgtcccttaacccctcttcaa |
9587045 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 5 - 87
Target Start/End: Complemental strand, 9587443 - 9587361
Alignment:
| Q |
5 |
catgagttatatagttgagtatttatagggtgatggaaaatagtgtaaatatagaatatggttaagattatatagtttaatgt |
87 |
Q |
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| T |
9587443 |
catgagttatatagttgagtatttatagggtgatggaaaatagtgtaaatatagaatatggttaagattatatagtttaatgt |
9587361 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 157 - 213
Target Start/End: Complemental strand, 55938908 - 55938852
Alignment:
| Q |
157 |
ggaatgagaatcggcaggtaggatgcaaagtccaaaaagaagatgttgattgggcaa |
213 |
Q |
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| T |
55938908 |
ggaatgagaatcggcagctaaggtgaaaagtccaaaaggaagaagttgattgggcaa |
55938852 |
T |
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