View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13914_low_1 (Length: 774)
Name: NF13914_low_1
Description: NF13914
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13914_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 470; Significance: 0; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 470; E-Value: 0
Query Start/End: Original strand, 13 - 562
Target Start/End: Original strand, 47550831 - 47551382
Alignment:
| Q |
13 |
gaaataatttcttttttcaaccaacttttaataatccaatgtccagtcatgatatgagaggagacaataatgggttgggaggcattatttcttcagttga |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47550831 |
gaaataatttcttttttcaaccaacttttaataatccaatgtccagtcatgatatgagaggagacaataatgggttgggaggcattatttcttcagttga |
47550930 |
T |
|
| Q |
113 |
aagtgtgcagaagaacaccgcagcaggatggaacaagataggaacaacaaattccctgccgcggcgggtggatagctttgatcatcaactggattctttt |
212 |
Q |
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||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
47550931 |
aagtgtgcagaagaacaccgcagcaggatcgaacaagatagaaacaacaaattccctgcc---gcgggtggatagctttgatcatcaactggattctttt |
47551027 |
T |
|
| Q |
213 |
tgtcgtgatgcaatgctgaagaagaaaagtgatagaacaatttgattacatgatgttttcatgaacacattgttctgaaacaatacttttct----tatt |
308 |
Q |
| |
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||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
47551028 |
tgtggtgatgcaatgctgaagaagacaagtgatagaacaatttgattacatgatgttttcatgaacacattgttctgaaacaatacttttctttcctatt |
47551127 |
T |
|
| Q |
309 |
tgaaagttaaggccccttgttaatttgtttaactgggaaaattcatgagttaggaattagggtagcagatcaaataggcgttagtggtaactcattcttt |
408 |
Q |
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|||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47551128 |
tgaaagttaagg-cccttgttaatttgtttaactgggaaacttcatgagttaggaattagggtagcagatcaaataggcgttagtggtaactcattcttt |
47551226 |
T |
|
| Q |
409 |
cagatgcatgtttgaaacatatattgttgacatggttggtaaattgtttttatgtttcttaatattgat--agaatgctttgattaatcaatggctgatg |
506 |
Q |
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| T |
47551227 |
cagatgcatgtttggaacatatattgttgacttggttggtaaattgtttttatgtttcttaatattgattgagaatgctttgattaatcaatggctgatg |
47551326 |
T |
|
| Q |
507 |
tgtaacttagatattatattcttattattgaaccagttttatccaaattggatacg |
562 |
Q |
| |
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||||||||||||||||| |||||||||||||| ||||||||||||||||||||||| |
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| T |
47551327 |
tgtaacttagatattatgttcttattattgaatcagttttatccaaattggatacg |
47551382 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 180; E-Value: 9e-97
Query Start/End: Original strand, 217 - 520
Target Start/End: Original strand, 47538259 - 47538571
Alignment:
| Q |
217 |
gtgatgcaatgctgaagaagaaaagtgatagaacaatttgattacatgatgttttcatgaacacattgttctgaaacaatacttttct----tatttgaa |
312 |
Q |
| |
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||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
47538259 |
gtgatgcaatgctaaagaagacaagtgatagaacaatttgattacatgatgttttcatgaacacattgttctgaaacaatacttttctttcctatttgaa |
47538358 |
T |
|
| Q |
313 |
agttaaggccc---cttgttaatttgtttaactgggaaaattcatgagttaggaattagggtagc--agatcaaataggcgttagtggtaactcattctt |
407 |
Q |
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||||||||||| |||||||||| ||||||||||||||||| ||||| || ||||||||||||| ||||||||||||| ||||||||||||||||||| |
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| T |
47538359 |
agttaaggccctttcttgttaattcgtttaactgggaaaatttatgagataagaattagggtagcatagatcaaataggccttagtggtaactcattctt |
47538458 |
T |
|
| Q |
408 |
tcagatgcatgtttgaaacatatattgttgacatggttggtaaattgtttttatgtttcttaatattgat--aga--atgctttgattaatcaatggctg |
503 |
Q |
| |
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|||| |||||| || |||||||||||||||| |||||||||||||||||||||||| ||||||||| ||| || ||||||||||||||||||| |
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| T |
47538459 |
ccagaagcatgtctggaacatatattgttgac----ttggtaaattgtttttatgtttctcaatattgattcagactgtgttttgattaatcaatggctg |
47538554 |
T |
|
| Q |
504 |
atgtgtaacttagatat |
520 |
Q |
| |
|
||||||||||||||||| |
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|
| T |
47538555 |
atgtgtaacttagatat |
47538571 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 170; E-Value: 8e-91
Query Start/End: Original strand, 231 - 520
Target Start/End: Original strand, 47544830 - 47545128
Alignment:
| Q |
231 |
aagaagaaaagtgatagaacaatttgattacatgatgttttcatgaacacattgttctgaaacaatacttttct----tatttgaaagttaaggccc--- |
323 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
47544830 |
aagaagacaagtgatagaacaatttgattacatgatgttttcatgaacacattgttctgaaacaatacttttctttcctatttgaaagttaaggcccttt |
47544929 |
T |
|
| Q |
324 |
cttgttaatttgtttaactgggaaaattcatgagttaggaattagggtagc--agatcaaataggcgttagtggtaactcattctttcagatgcatgttt |
421 |
Q |
| |
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|||||||||| ||||||||||||||||| ||||| || ||||||||||||| ||||||||||||| ||||||||||||||||||| |||| |||||| | |
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| T |
47544930 |
cttgttaattcgtttaactgggaaaatttatgagataagaattagggtagcatagatcaaataggccttagtggtaactcattcttccagaagcatgtct |
47545029 |
T |
|
| Q |
422 |
gaaacatatattgttgacatggttggtaaattgtttttatgtttcttaatattgat--aga--atgctttgattaatcaatggctgatgtgtaacttaga |
517 |
Q |
| |
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| T |
47545030 |
ggaacatatattgttgac----ttggtaaattgtttttatgtttctcaatattgattcagactgtgttttgattaatcaatggctgatgtgtaacttaga |
47545125 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 51 - 322
Target Start/End: Original strand, 47529011 - 47529275
Alignment:
| Q |
51 |
atgtccagtcatgatatgagaggagacaataatgggttgggaggcattatttcttcagttgaaagtgtgcagaagaacaccgcagcaggatggaacaaga |
150 |
Q |
| |
|
||||||||||||||||||||||||| ||||||| | | |||| ||||||||||||||| |||||||| || |||||||| ||||||| ||||||||| |
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| T |
47529011 |
atgtccagtcatgatatgagaggagccaataatagatcgggaagcattatttcttcagctgaaagtgggc---agaacaccccagcaggtgggaacaaga |
47529107 |
T |
|
| Q |
151 |
taggaacaacaaattccctgccgcggcgggtggatagctttgatcatcaactggattctttttgtcgtgatgcaatgctgaagaagaaaagtgatagaac |
250 |
Q |
| |
|
||||| ||||||||||||||| ||||||| |||||| || |||| | || || | ||||| || ||| |||||||| ||||||||||| |
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| T |
47529108 |
taggacgaacaaattccctgcc---acgggtggctagcttggaacatcttc-agagtcgaat--tcgtggtg--gtgccgaagaagacaagtgatagaat |
47529199 |
T |
|
| Q |
251 |
aatttgattacatgatgttttcatgaacacattgttctgaaacaatacttttct----tatttgaaagttaaggcc |
322 |
Q |
| |
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||||||||||||| |||||||||||||||||||||| ||| ||||||||||||| |||||||||||||||||| |
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|
| T |
47529200 |
aatttgattacataatgttttcatgaacacattgttttgagacaatacttttctttcctatttgaaagttaaggcc |
47529275 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 668 - 758
Target Start/End: Original strand, 47551499 - 47551592
Alignment:
| Q |
668 |
cattttgaagacaaatgcatcattgtgtgtgc---tagacactatccatttgatctcgtccgcaactacctacttattcctattggctacttaa |
758 |
Q |
| |
|
|||||||||||||||| ||||||||||||||| || ||||||| |||||||| ||||||||||||||| || ||||||||||||||||||| |
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| T |
47551499 |
cattttgaagacaaatacatcattgtgtgtgcgcctaaacactatgtatttgatcccgtccgcaactaccttctaattcctattggctacttaa |
47551592 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 576 - 639
Target Start/End: Original strand, 36451343 - 36451406
Alignment:
| Q |
576 |
agtcttctataatcataagaccatatatatagtgtttagacacacgtataaagagacatttttt |
639 |
Q |
| |
|
|||||||||| |||||||| ||||||||||||||||| ||||| || ||||||||||||||| |
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|
| T |
36451343 |
agtcttctatggtcataagatcatatatatagtgtttatgcacacatacaaagagacatttttt |
36451406 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 41; Significance: 0.00000000000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 583 - 639
Target Start/End: Original strand, 8009656 - 8009712
Alignment:
| Q |
583 |
tataatcataagaccatatatatagtgtttagacacacgtataaagagacatttttt |
639 |
Q |
| |
|
|||||||| ||||||| |||||||||| |||||||||| |||||||||||||||||| |
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|
| T |
8009656 |
tataatcacaagaccaaatatatagtggttagacacacatataaagagacatttttt |
8009712 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 600 - 639
Target Start/End: Original strand, 32019074 - 32019113
Alignment:
| Q |
600 |
atatatagtgtttagacacacgtataaagagacatttttt |
639 |
Q |
| |
|
||||| ||||||||||||||| |||||||||||||||||| |
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|
| T |
32019074 |
atatacagtgtttagacacacatataaagagacatttttt |
32019113 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000007; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 578 - 640
Target Start/End: Complemental strand, 30204267 - 30204205
Alignment:
| Q |
578 |
tcttctataatcataagaccatatatatagtgtttagacacacgtataaagagacattttttc |
640 |
Q |
| |
|
|||||||| ||| |||||||||| |||||||||||| ||||| | |||||||||||||||| |
|
|
| T |
30204267 |
tcttctatggtcacaagaccatatgtatagtgtttaggcacacatgcaaagagacattttttc |
30204205 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 576 - 629
Target Start/End: Complemental strand, 52216180 - 52216127
Alignment:
| Q |
576 |
agtcttctataatcataagaccatatatatagtgtttagacacacgtataaaga |
629 |
Q |
| |
|
|||||||||| ||| ||||||| ||||||||||||||||||||| || ||||| |
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|
| T |
52216180 |
agtcttctatggtcacaagaccaaatatatagtgtttagacacacatacaaaga |
52216127 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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