View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13914_low_18 (Length: 254)
Name: NF13914_low_18
Description: NF13914
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13914_low_18 |
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Alignment Details
Target: chr4 (Bit Score: 228; Significance: 1e-126; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 11 - 238
Target Start/End: Complemental strand, 3804574 - 3804347
Alignment:
| Q |
11 |
cagagaaaatgacagaactagatttacggatacacactagtcaatgttttgcctgcattgtttggatgtcaaagaaaacttaaaatcctacatttaggat |
110 |
Q |
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| T |
3804574 |
cagagaaaatgacagaactagatttacggatacacactagtcaatgttttgcctgcattgtttggatgtcaaagaaaacttaaaatcctacatttaggat |
3804475 |
T |
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| Q |
111 |
aatgtttcatgaaaattttccttcatgtttaagaatctgataagactacagtatctagacatttgatgttgccataaactgaaaactctgtcagagcttc |
210 |
Q |
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| T |
3804474 |
aatgtttcatgaaaattttccttcatgtttaagaatctgataagactacagtatctagacatttgatgttgccataaactgaaaactctgtcagagcttc |
3804375 |
T |
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| Q |
211 |
ctcaatctcttgaaattatacttacttg |
238 |
Q |
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| T |
3804374 |
ctcaatctcttgaaattatacttacttg |
3804347 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 13 - 233
Target Start/End: Original strand, 3948389 - 3948611
Alignment:
| Q |
13 |
gagaaaatgacagaactagatttacggatacacactagtcaatgttttgcctgcattgtttggatgtcaaagaaaacttaaaatcctacatttaggataa |
112 |
Q |
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| T |
3948389 |
gagaaaatgacagtactggatttacg-atacacacaagttaatgtaatgcctgcattgtttggatgtcaaagaaagcttgaaaccctacatttaggatac |
3948487 |
T |
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| Q |
113 |
tgtttcatgaaaattttccttcatg-tttaagaatctg--ataagactacagtatctagacatttgatgttgccataaactgaaaactctgtcagagctt |
209 |
Q |
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| T |
3948488 |
tgtttcatgaaaattttcctttatgttttaagaatatgatataaggctacaatatctagccataagatgttgccataaactgcaaagtctgccagaccta |
3948587 |
T |
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| Q |
210 |
cctcaatctcttgaaattatactt |
233 |
Q |
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|||||||||||||||||| ||||| |
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| T |
3948588 |
cctcaatctcttgaaattctactt |
3948611 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 40 - 224
Target Start/End: Original strand, 3965417 - 3965603
Alignment:
| Q |
40 |
atacacactagtcaatgttttgcctgcattgtttggatgtcaaagaaaacttaaaatcctacatttaggataatgtttcat-gaaaattttccttcatgt |
138 |
Q |
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|||||||| | |||||| |||||||||| |||||| |||||| || ||| ||||||||||||||||| | |||| ||| |||| |||||||||||| |
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| T |
3965417 |
atacacacaaatcaatgcattgcctgcatcatttggacgtcaaaccaagcttgaaatcctacatttaggaaactgttccattgaaagatttccttcatgt |
3965516 |
T |
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| Q |
139 |
tt-aagaatctgataagactacagtatctagacatttgatgttgccataaactgaaaactctgtcagagcttcctcaatctcttgaa |
224 |
Q |
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| T |
3965517 |
tttaagaatttgataagactgcaatatctagacataagatattgccttaagctgcaaactctaccagagcttcctcaatctcttgaa |
3965603 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 59 - 232
Target Start/End: Complemental strand, 4016877 - 4016702
Alignment:
| Q |
59 |
ttgcctgcattgtttggatgtcaaagaaaacttaaaatcctacatttaggataatgtttca-tgaaaattttccttcatg-tttaagaatctgataagac |
156 |
Q |
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|||||||||| |||||||||||||| || ||| ||||||||||||||||| | |||| || |||||||||||||||||| ||||||||||| |||| || |
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| T |
4016877 |
ttgcctgcatcatttggatgtcaaagcaagcttgaaatcctacatttaggaaattgttccattgaaaattttccttcatgttttaagaatctaataaaac |
4016778 |
T |
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| Q |
157 |
tacagtatctagacatttgatgttgccataaactgaaaactctgtcagagcttcctcaatctcttgaaattatact |
232 |
Q |
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|||| |||||||| | ||| ||| || |||||| ||| ||| ||| |||||||| ||||||||||||| |||| |
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| T |
4016777 |
tacaatatctagaggtaagatattgtcagaaactgcaaaatctaccagtgcttcctccatctcttgaaattctact |
4016702 |
T |
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