View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13914_low_19 (Length: 253)

Name: NF13914_low_19
Description: NF13914
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13914_low_19
NF13914_low_19
[»] chr3 (32 HSPs)
chr3 (13-239)||(10260688-10260914)
chr3 (13-239)||(10580591-10580817)
chr3 (14-239)||(9838851-9839076)
chr3 (14-239)||(9849729-9849954)
chr3 (13-239)||(10031993-10032219)
chr3 (13-239)||(10126918-10127144)
chr3 (13-239)||(10433897-10434123)
chr3 (13-239)||(10663516-10663742)
chr3 (13-239)||(10184232-10184458)
chr3 (13-239)||(10363651-10363877)
chr3 (14-239)||(10375699-10375924)
chr3 (14-239)||(11769224-11769449)
chr3 (13-239)||(10088780-10089006)
chr3 (13-239)||(10195663-10195889)
chr3 (14-239)||(10077259-10077484)
chr3 (15-239)||(11130881-11131105)
chr3 (15-238)||(11159872-11160095)
chr3 (15-239)||(11148709-11148933)
chr3 (15-238)||(8861277-8861500)
chr3 (15-238)||(10889297-10889520)
chr3 (13-97)||(10527490-10527574)
chr3 (15-238)||(13332895-13333118)
chr3 (13-238)||(13160971-13161196)
chr3 (13-238)||(13171022-13171247)
chr3 (13-238)||(13289656-13289881)
chr3 (13-238)||(13344080-13344305)
chr3 (114-238)||(10517455-10517579)
chr3 (14-98)||(10517616-10517700)
chr3 (114-238)||(10527328-10527452)
chr3 (14-98)||(11781836-11781920)
chr3 (114-238)||(11781957-11782081)
chr3 (18-91)||(10500712-10500785)
[»] chr2 (1 HSPs)
chr2 (15-239)||(26906887-26907111)
[»] scaffold0002 (2 HSPs)
scaffold0002 (13-238)||(135741-135966)
scaffold0002 (13-238)||(145792-146017)
[»] chr4 (3 HSPs)
chr4 (114-238)||(17852898-17853022)
chr4 (146-229)||(7128961-7129044)
chr4 (146-229)||(7482094-7482177)
[»] chr7 (1 HSPs)
chr7 (14-172)||(29836700-29836858)
[»] chr8 (1 HSPs)
chr8 (114-238)||(11485008-11485132)


Alignment Details
Target: chr3 (Bit Score: 195; Significance: 1e-106; HSPs: 32)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 13 - 239
Target Start/End: Complemental strand, 10260914 - 10260688
Alignment:
Q  13 gatcatccaacacaaacaaaaatcttttctccctcgagattttctttaactcaactcgaaggacgtcaagattattgctatcccaagttctggaagtgac 112  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||| |||| ||||||||    
T  10260914 gatcgtccaacacaaacaaaaatcttttctccctcgagattttctttaactcaactcgaaggatgtcaagattattgatatcccaatttctagaagtgac 10260815  T
Q  113 cgattcaagtagagacttggttactctcataatatcaaaatcctcagacacacaagcccacgccttcatgtcaaaatgttgttgaacttctttatcattg 212  Q
     |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10260814 tgattcaaggagagacttggttactctcataatatcaaaatcctcagacacacaagcccacgccttcatgtcaaaatgttgttgaacttctttatcattg 10260715  T
Q  213 taaacaagttgggcaagggtagttttt 239  Q
    ||||||||||| |||||||||||||||    
T  10260714 taaacaagttgagcaagggtagttttt 10260688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 13 - 239
Target Start/End: Complemental strand, 10580817 - 10580591
Alignment:
Q  13 gatcatccaacacaaacaaaaatcttttctccctcgagattttctttaactcaactcgaaggacgtcaagattattgctatcccaagttctggaagtgac 112  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||| |||||||||||||| ||| ||||| ||||||||||    
T  10580817 gatcatccaacacaaacaaaaatcttttctcccttgagattttctttaactcaacacgaaggacatcaagattattgctttccgaagttgtggaagtgac 10580718  T
Q  113 cgattcaagtagagacttggttactctcataatatcaaaatcctcagacacacaagcccacgccttcatgtcaaaatgttgttgaacttctttatcattg 212  Q
     |||||||| |||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  10580717 agattcaaggagagactttgttactctcataatatcaaaatcctcagacacacaaacccacgccttcatgtcaaaatgttgttgaacttctttatcattg 10580618  T
Q  213 taaacaagttgggcaagggtagttttt 239  Q
    |||||||||||||||||||||||||||    
T  10580617 taaacaagttgggcaagggtagttttt 10580591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 14 - 239
Target Start/End: Complemental strand, 9839076 - 9838851
Alignment:
Q  14 atcatccaacacaaacaaaaatcttttctccctcgagattttctttaactcaactcgaaggacgtcaagattattgctatcccaagttctggaagtgacc 113  Q
    ||||||||||||||||||||||||||||||||| ||| ||||||||||| ||||||||||||| |||||||||||||||||||| ||| |||||||||||    
T  9839076 atcatccaacacaaacaaaaatcttttctcccttgagtttttctttaacgcaactcgaaggacatcaagattattgctatcccatgttatggaagtgacc 9838977  T
Q  114 gattcaagtagagacttggttactctcataatatcaaaatcctcagacacacaagcccacgccttcatgtcaaaatgttgttgaacttctttatcattgt 213  Q
    |||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||| ||||||||    
T  9838976 gattcaaggagagacttggttactctcaaaatatcaaaatcctcagacacacaagcccacgccctcatatcaaaatgttgttgaacttcttcatcattgt 9838877  T
Q  214 aaacaagttgggcaagggtagttttt 239  Q
    ||||||||||||||||||||||||||    
T  9838876 aaacaagttgggcaagggtagttttt 9838851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 14 - 239
Target Start/End: Complemental strand, 9849954 - 9849729
Alignment:
Q  14 atcatccaacacaaacaaaaatcttttctccctcgagattttctttaactcaactcgaaggacgtcaagattattgctatcccaagttctggaagtgacc 113  Q
    ||||||||||||||||||||||||||||||||| ||| ||||||||||| ||||||||||||| |||||||||||||||||||| ||| |||||||||||    
T  9849954 atcatccaacacaaacaaaaatcttttctcccttgagtttttctttaacgcaactcgaaggacatcaagattattgctatcccatgttatggaagtgacc 9849855  T
Q  114 gattcaagtagagacttggttactctcataatatcaaaatcctcagacacacaagcccacgccttcatgtcaaaatgttgttgaacttctttatcattgt 213  Q
    |||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||| ||||||||    
T  9849854 gattcaaggagagacttggttactctcaaaatatcaaaatcctcagacacacaagcccacgccctcatatcaaaatgttgttgaacttcttcatcattgt 9849755  T
Q  214 aaacaagttgggcaagggtagttttt 239  Q
    ||||||||||||||||||||||||||    
T  9849754 aaacaagttgggcaagggtagttttt 9849729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 13 - 239
Target Start/End: Complemental strand, 10032219 - 10031993
Alignment:
Q  13 gatcatccaacacaaacaaaaatcttttctccctcgagattttctttaactcaactcgaaggacgtcaagattattgctatcccaagttctggaagtgac 112  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||  ||||||||| ||||| ||||||||||    
T  10032219 gatcatccaaaacaaacaaaaatcttttctccctcgagattttctttaactcaactcgaaggacatcaagatctttgctatccgaagttgtggaagtgac 10032120  T
Q  113 cgattcaagtagagacttggttactctcataatatcaaaatcctcagacacacaagcccacgccttcatgtcaaaatgttgttgaacttctttatcattg 212  Q
     |||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||  ||||||||||||||||||||||||||||||    
T  10032119 agattcaaggagagactttgttactctcataatatcaaaatcctcagacacacaagcccaggccttcaaatcaaaatgttgttgaacttctttatcattg 10032020  T
Q  213 taaacaagttgggcaagggtagttttt 239  Q
    |||||||||||||||||||||||||||    
T  10032019 taaacaagttgggcaagggtagttttt 10031993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 13 - 239
Target Start/End: Complemental strand, 10127144 - 10126918
Alignment:
Q  13 gatcatccaacacaaacaaaaatcttttctccctcgagattttctttaactcaactcgaaggacgtcaagattattgctatcccaagttctggaagtgac 112  Q
    |||| ||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||| ||||||||||    
T  10127144 gatcgtccaacacaaacaaaaatcttttttccctcgagattttctttaacgcaactcgaaggacatcaagattattgctatcccaagttgtggaagtgac 10127045  T
Q  113 cgattcaagtagagacttggttactctcataatatcaaaatcctcagacacacaagcccacgccttcatgtcaaaatgttgttgaacttctttatcattg 212  Q
     |||||||| |||||||| |||||||||||||||||||||||||||||||||||| |||| |||||||  ||||||||||||||||||||||||||||||    
T  10127044 agattcaaggagagactttgttactctcataatatcaaaatcctcagacacacaaacccatgccttcaaatcaaaatgttgttgaacttctttatcattg 10126945  T
Q  213 taaacaagttgggcaagggtagttttt 239  Q
    |||||||||||||||||||||||||||    
T  10126944 taaacaagttgggcaagggtagttttt 10126918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 13 - 239
Target Start/End: Original strand, 10433897 - 10434123
Alignment:
Q  13 gatcatccaacacaaacaaaaatcttttctccctcgagattttctttaactcaactcgaaggacgtcaagattattgctatcccaagttctggaagtgac 112  Q
    |||| ||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||    
T  10433897 gatcgtccaacacaaacaaaaatcttttctccctcgagtttttctttaactcaacacgaaggacatcaagattattgctatcccaagttctggaagtgac 10433996  T
Q  113 cgattcaagtagagacttggttactctcataatatcaaaatcctcagacacacaagcccacgccttcatgtcaaaatgttgttgaacttctttatcattg 212  Q
    ||||||||| ||||||||||||||| ||| |||||||||||||| ||||||||||||||| |||||||  |||||||| |||||||||||||||||||||    
T  10433997 cgattcaaggagagacttggttactttcaaaatatcaaaatcctgagacacacaagcccaggccttcaaatcaaaatggtgttgaacttctttatcattg 10434096  T
Q  213 taaacaagttgggcaagggtagttttt 239  Q
    |||||||||||||||||||||||||||    
T  10434097 taaacaagttgggcaagggtagttttt 10434123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 13 - 239
Target Start/End: Complemental strand, 10663742 - 10663516
Alignment:
Q  13 gatcatccaacacaaacaaaaatcttttctccctcgagattttctttaactcaactcgaaggacgtcaagattattgctatcccaagttctggaagtgac 112  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||  ||||||||||||||| ||||||||||    
T  10663742 gatcatcgaacacaaacaaaaatcttttctccctcgagattttctttaactcaactcgaaggacatcaagatctttgctatcccaagttgtggaagtgac 10663643  T
Q  113 cgattcaagtagagacttggttactctcataatatcaaaatcctcagacacacaagcccacgccttcatgtcaaaatgttgttgaacttctttatcattg 212  Q
     |||||||| |||||||| |||||||||||||||||||||||||||||||||||| |||| |||||||  ||||||||||||||||||||||||||||||    
T  10663642 agattcaaggagagactttgttactctcataatatcaaaatcctcagacacacaaacccatgccttcaaatcaaaatgttgttgaacttctttatcattg 10663543  T
Q  213 taaacaagttgggcaagggtagttttt 239  Q
    |||||||||||||||||||||||||||    
T  10663542 taaacaagttgggcaagggtagttttt 10663516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 13 - 239
Target Start/End: Complemental strand, 10184458 - 10184232
Alignment:
Q  13 gatcatccaacacaaacaaaaatcttttctccctcgagattttctttaactcaactcgaaggacgtcaagattattgctatcccaagttctggaagtgac 112  Q
    |||||||||| ||||||||||||||||||||||| ||   |||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||    
T  10184458 gatcatccaatacaaacaaaaatcttttctcccttgaatgtttctttaactcaactcgaaggacatcaagattattgctatcccaagttgtggaagtgac 10184359  T
Q  113 cgattcaagtagagacttggttactctcataatatcaaaatcctcagacacacaagcccacgccttcatgtcaaaatgttgttgaacttctttatcattg 212  Q
     |||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||| ||||||||||||||||||||||||||||||    
T  10184358 agattcaaggagagacttggttactctcataatatcaaaatcctcggacacacaagcccacgccctcatatcaaaatgttgttgaacttctttatcattg 10184259  T
Q  213 taaacaagttgggcaagggtagttttt 239  Q
    ||||||||||| |||||||||||||||    
T  10184258 taaacaagttgagcaagggtagttttt 10184232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 13 - 239
Target Start/End: Original strand, 10363651 - 10363877
Alignment:
Q  13 gatcatccaacacaaacaaaaatcttttctccctcgagattttctttaactcaactcgaaggacgtcaagattattgctatcccaagttctggaagtgac 112  Q
    |||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||| ||||| |||||||| |    
T  10363651 gatcgtccaacacaaacaaatatcttttctccctcgagattttctttaactcaactcgaaggacatcaagattattgctttccgaagttatggaagtggc 10363750  T
Q  113 cgattcaagtagagacttggttactctcataatatcaaaatcctcagacacacaagcccacgccttcatgtcaaaatgttgttgaacttctttatcattg 212  Q
     |||||||| |||||||| ||||||||||||||||||||||||||||| |||||| |||| |||||||  ||||||||||||||||||||||||||||||    
T  10363751 agattcaaggagagactttgttactctcataatatcaaaatcctcagagacacaaacccatgccttcaaatcaaaatgttgttgaacttctttatcattg 10363850  T
Q  213 taaacaagttgggcaagggtagttttt 239  Q
    |||||||||||||||||||||||||||    
T  10363851 taaacaagttgggcaagggtagttttt 10363877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 14 - 239
Target Start/End: Original strand, 10375699 - 10375924
Alignment:
Q  14 atcatccaacacaaacaaaaatcttttctccctcgagattttctttaactcaactcgaaggacgtcaagattattgctatcccaagttctggaagtgacc 113  Q
    ||||||||||||||||||||||||||||||||| ||  ||||||||||| ||||||||||||| |||||||||||||||||||| ||||| |||||||||    
T  10375699 atcatccaacacaaacaaaaatcttttctcccttgattttttctttaacgcaactcgaaggacatcaagattattgctatcccatgttcttgaagtgacc 10375798  T
Q  114 gattcaagtagagacttggttactctcataatatcaaaatcctcagacacacaagcccacgccttcatgtcaaaatgttgttgaacttctttatcattgt 213  Q
    |||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||  ||||||||||||||||||| || ||||||||    
T  10375799 gattcaaggagagacttggttactctcaaaatatcaaaatcctcagacacacaagcccatgccttcaaatcaaaatgttgttgaactttttcatcattgt 10375898  T
Q  214 aaacaagttgggcaagggtagttttt 239  Q
    |||||||||| |||||||||||||||    
T  10375899 aaacaagttgtgcaagggtagttttt 10375924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 14 - 239
Target Start/End: Complemental strand, 11769449 - 11769224
Alignment:
Q  14 atcatccaacacaaacaaaaatcttttctccctcgagattttctttaactcaactcgaaggacgtcaagattattgctatcccaagttctggaagtgacc 113  Q
    |||||| ||||||||||||||||||||||||||| || ||||||||||||||||||||||||  |||||||||||||||||||||||||| |||||||||    
T  11769449 atcatctaacacaaacaaaaatcttttctccctcaagtttttctttaactcaactcgaaggatatcaagattattgctatcccaagttcttgaagtgacc 11769350  T
Q  114 gattcaagtagagacttggttactctcataatatcaaaatcctcagacacacaagcccacgccttcatgtcaaaatgttgttgaacttctttatcattgt 213  Q
    |||||||| |||||| |||||||||||||||||||||||||||||||||| |||||||| |||||||  ||||||| |||||||||||||||||||||||    
T  11769349 gattcaaggagagacctggttactctcataatatcaaaatcctcagacacgcaagcccatgccttcaaatcaaaatattgttgaacttctttatcattgt 11769250  T
Q  214 aaacaagttgggcaagggtagttttt 239  Q
    | |||||||| |||||||||||||||    
T  11769249 agacaagttgagcaagggtagttttt 11769224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 13 - 239
Target Start/End: Complemental strand, 10089006 - 10088780
Alignment:
Q  13 gatcatccaacacaaacaaaaatcttttctccctcgagattttctttaactcaactcgaaggacgtcaagattattgctatcccaagttctggaagtgac 112  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||  |||||| |||||||||| ||||| | ||||||||    
T  10089006 gatcatccaacacaaacaaaaatcttttctccctcgagtttttctttaactcaacttgaaggacaccaagatcattgctatccgaagttgtcgaagtgac 10088907  T
Q  113 cgattcaagtagagacttggttactctcataatatcaaaatcctcagacacacaagcccacgccttcatgtcaaaatgttgttgaacttctttatcattg 212  Q
     |||||||| |||||||| |||||||||||||||||||||||||||||||||||| |||| |||||||  |||||||| |||||||||||||||||||||    
T  10088906 agattcaaggagagactttgttactctcataatatcaaaatcctcagacacacaaacccatgccttcaaatcaaaatggtgttgaacttctttatcattg 10088807  T
Q  213 taaacaagttgggcaagggtagttttt 239  Q
    |||||||||||||||||||||||||||    
T  10088806 taaacaagttgggcaagggtagttttt 10088780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 13 - 239
Target Start/End: Complemental strand, 10195889 - 10195663
Alignment:
Q  13 gatcatccaacacaaacaaaaatcttttctccctcgagattttctttaactcaactcgaaggacgtcaagattattgctatcccaagttctggaagtgac 112  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||  |||||| |||||||||| ||||| | ||||||||    
T  10195889 gatcatccaacacaaacaaaaatcttttctccctcgagtttttctttaactcaacttgaaggacaccaagatcattgctatccgaagttgtcgaagtgac 10195790  T
Q  113 cgattcaagtagagacttggttactctcataatatcaaaatcctcagacacacaagcccacgccttcatgtcaaaatgttgttgaacttctttatcattg 212  Q
     |||||||| |||||||| |||||||||||||||||||||||||||||||||||| |||| |||||||  |||||||| |||||||||||||||||||||    
T  10195789 agattcaaggagagactttgttactctcataatatcaaaatcctcagacacacaaacccatgccttcaaatcaaaatggtgttgaacttctttatcattg 10195690  T
Q  213 taaacaagttgggcaagggtagttttt 239  Q
    |||||||||||||||||||||||||||    
T  10195689 taaacaagttgggcaagggtagttttt 10195663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 14 - 239
Target Start/End: Complemental strand, 10077484 - 10077259
Alignment:
Q  14 atcatccaacacaaacaaaaatcttttctccctcgagattttctttaactcaactcgaaggacgtcaagattattgctatcccaagttctggaagtgacc 113  Q
    |||||| |||||||||||||||||||| ||||||||| |||| |||||||||||||||||||| ||||||| |||| ||||||||||||| ||||||| |    
T  10077484 atcatctaacacaaacaaaaatcttttatccctcgagtttttttttaactcaactcgaaggacatcaagatcattgttatcccaagttctagaagtgatc 10077385  T
Q  114 gattcaagtagagacttggttactctcataatatcaaaatcctcagacacacaagcccacgccttcatgtcaaaatgttgttgaacttctttatcattgt 213  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||  |||||||| | | ||||||  | ||||||||    
T  10077384 gattcaaggagagacttggttactctcataatatcaaaatcctcagacacacaagcccatgcctgcaaatcaaaatggtatcgaactttataatcattgt 10077285  T
Q  214 aaacaagttgggcaagggtagttttt 239  Q
    ||||||||||||||||||||||||||    
T  10077284 aaacaagttgggcaagggtagttttt 10077259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 15 - 239
Target Start/End: Original strand, 11130881 - 11131105
Alignment:
Q  15 tcatccaacacaaacaaaaatcttttctccctcgagattttctttaactcaactcgaaggacgtcaagattattgctatcccaagttctggaagtgaccg 114  Q
    |||||||||||||||||||||||||| || ||| |  ||||||| |  ||||||||||| |  |||||||||||| | |||||||  || |||||||| |    
T  11130881 tcatccaacacaaacaaaaatcttttgtctctcaaagttttcttcagttcaactcgaagaaaatcaagattattgttttcccaagcccttgaagtgacag 11130980  T
Q  115 attcaagtagagacttggttactctcataatatcaaaatcctcagacacacaagcccacgccttcatgtcaaaatgttgttgaacttctttatcattgta 214  Q
    ||||||| ||||  || |||||||| | ||||||||||||||| || ||||||||||| || || |  ||||| |||| |||||||| || |||||||||    
T  11130981 attcaaggagagttttagttactcttaaaatatcaaaatcctccgatacacaagcccatgctttgagatcaaagtgttcttgaactttttcatcattgta 11131080  T
Q  215 aacaagttgggcaagggtagttttt 239  Q
    | ||| ||| |||||||| ||||||    
T  11131081 agcaatttgtgcaagggttgttttt 11131105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 15 - 238
Target Start/End: Original strand, 11159872 - 11160095
Alignment:
Q  15 tcatccaacacaaacaaaaatcttttctccctcgagattttctttaactcaactcgaaggacgtcaagattattgctatcccaagttctggaagtgaccg 114  Q
    |||||||||||||||||||||||||| || ||| |  |||||||||  ||||||||||| |  |||||||||||| | ||||||| ||| |||||||| |    
T  11159872 tcatccaacacaaacaaaaatcttttgtcgctcaaagttttctttagttcaactcgaagaaaatcaagattattggtttcccaagctcttgaagtgacag 11159971  T
Q  115 attcaagtagagacttggttactctcataatatcaaaatcctcagacacacaagcccacgccttcatgtcaaaatgttgttgaacttctttatcattgta 214  Q
    ||||||| ||||  || |||||    | |||||||||||||||||| ||||||||||| || || |  |||||||| | |||||||| || || ||||||    
T  11159972 attcaagaagagttttagttacagataaaatatcaaaatcctcagatacacaagcccatgctttgaaatcaaaatgatcttgaactttttcattattgta 11160071  T
Q  215 aacaagttgggcaagggtagtttt 238  Q
    ||||||||| ||||| || |||||    
T  11160072 aacaagttgtgcaagtgtcgtttt 11160095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 15 - 239
Target Start/End: Original strand, 11148709 - 11148933
Alignment:
Q  15 tcatccaacacaaacaaaaatcttttctccctcgagattttctttaactcaactcgaaggacgtcaagattattgctatcccaagttctggaagtgaccg 114  Q
    ||||||||||||||||||||||||||  | ||| |  ||||||| |  ||||||||||| |  |||||||||||| | |||||||  || |||||||| |    
T  11148709 tcatccaacacaaacaaaaatcttttggctctcaaagttttcttcagttcaactcgaagaaaatcaagattattgttttcccaagcccttgaagtgacag 11148808  T
Q  115 attcaagtagagacttggttactctcataatatcaaaatcctcagacacacaagcccacgccttcatgtcaaaatgttgttgaacttctttatcattgta 214  Q
    ||||||| ||||  || |||||||| | ||||||||||||||| || ||||||||||| || || |  ||||| |||| |||||||| || |||||||||    
T  11148809 attcaaggagagttttagttactcttaaaatatcaaaatcctccgatacacaagcccatgctttgagatcaaagtgttcttgaactttttcatcattgta 11148908  T
Q  215 aacaagttgggcaagggtagttttt 239  Q
    | ||| ||| |||||||| ||||||    
T  11148909 agcaatttgtgcaagggttgttttt 11148933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 15 - 238
Target Start/End: Complemental strand, 8861500 - 8861277
Alignment:
Q  15 tcatccaacacaaacaaaaatcttttctccctcgagattttctttaactcaactcgaaggacgtcaagattattgctatcccaagttctggaagtgaccg 114  Q
    |||||||||||||||||||||||||| || ||| |  |||||||||  ||||||||||| |  |||||||||||| | ||||||| ||| |||||||| |    
T  8861500 tcatccaacacaaacaaaaatcttttgtctctcaatgttttctttagttcaactcgaagaaaatcaagattattgttttcccaagctcttgaagtgacag 8861401  T
Q  115 attcaagtagagacttggttactctcataatatcaaaatcctcagacacacaagcccacgccttcatgtcaaaatgttgttgaacttctttatcattgta 214  Q
    ||||||| ||||  || |||||  |   ||||||||||||||| || ||||||||||| || || |  ||||| || | |||||||| || |||||||||    
T  8861400 attcaagaagagttttagttacagttgaaatatcaaaatcctctgatacacaagcccatgctttgagatcaaagtgctcttgaactttttcatcattgta 8861301  T
Q  215 aacaagttgggcaagggtagtttt 238  Q
    ||||||||| ||||| || |||||    
T  8861300 aacaagttgtgcaagtgtcgtttt 8861277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 15 - 238
Target Start/End: Complemental strand, 10889520 - 10889297
Alignment:
Q  15 tcatccaacacaaacaaaaatcttttctccctcgagattttctttaactcaactcgaaggacgtcaagattattgctatcccaagttctggaagtgaccg 114  Q
    |||||||||||||||||||||||||| || ||| |  |||||||||  ||||||||||| |  || ||||||||| | ||||||| ||| ||||| || |    
T  10889520 tcatccaacacaaacaaaaatcttttgtctctcaaagttttctttagttcaactcgaagaaaatctagattattgttttcccaagctcttgaagtcacag 10889421  T
Q  115 attcaagtagagacttggttactctcataatatcaaaatcctcagacacacaagcccacgccttcatgtcaaaatgttgttgaacttctttatcattgta 214  Q
    ||||||| ||||  || |||||  | | |||||||||||||||||| ||||||||||| || || |  ||||| || | |||||||| || |||||||||    
T  10889420 attcaagaagagttttagttacagttaaaatatcaaaatcctcagatacacaagcccatgctttgagatcaaagtgctcttgaactttttcatcattgta 10889321  T
Q  215 aacaagttgggcaagggtagtttt 238  Q
    ||||||||| ||||| || |||||    
T  10889320 aacaagttgtgcaagtgtcgtttt 10889297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 13 - 97
Target Start/End: Complemental strand, 10527574 - 10527490
Alignment:
Q  13 gatcatccaacacaaacaaaaatcttttctccctcgagattttctttaactcaactcgaaggacgtcaagattattgctatccca 97  Q
    ||||||||||||||||||||||||| |||||||| |||||||||||||||| |||||||||||  |||||||||||||| |||||    
T  10527574 gatcatccaacacaaacaaaaatctcttctcccttgagattttctttaactgaactcgaaggatatcaagattattgctttccca 10527490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 15 - 238
Target Start/End: Complemental strand, 13333118 - 13332895
Alignment:
Q  15 tcatccaacacaaacaaaaatcttttctccctcgagattttctttaactcaactcgaaggacgtcaagattattgctatcccaagttctggaagtgaccg 114  Q
    ||||||||||| |||||||||||||| |||||| || |||| || || ||||||||||| |  |||||||||||| | || | |  ||| |||||||| |    
T  13333118 tcatccaacactaacaaaaatcttttatccctcaagtttttattcaattcaactcgaagaaaatcaagattattgttttcaccacctcttgaagtgacag 13333019  T
Q  115 attcaagtagagacttggttactctcataatatcaaaatcctcagacacacaagcccacgccttcatgtcaaaatgttgttgaacttctttatcattgta 214  Q
    ||||| | |  |  || |||||||||| |||||| |||||||| || |||||| ||||  | ||||  |||||||| | |||||||||||||||||| ||    
T  13333018 attcatgaatggttttagttactctcagaatatcgaaatcctccgatacacaaacccagactttcagatcaaaatggtcttgaacttctttatcattata 13332919  T
Q  215 aacaagttgggcaagggtagtttt 238  Q
    || |||||||||||| || |||||    
T  13332918 aagaagttgggcaagagtggtttt 13332895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 13 - 238
Target Start/End: Complemental strand, 13161196 - 13160971
Alignment:
Q  13 gatcatccaacacaaacaaaaatcttttctccctcgagattttctttaactcaactcgaaggacgtcaagattattgctatcccaagttctggaagtgac 112  Q
    |||| |||| ||| |||||||||||||| |||||| || |||| || ||||||||||||||    |||||||||||||| || | || ||| || |||||    
T  13161196 gatcgtccagcactaacaaaaatcttttatccctcaagtttttattcaactcaactcgaagagaatcaagattattgctttcgccagctcttgaggtgac 13161097  T
Q  113 cgattcaagtagagacttggttactctcataatatcaaaatcctcagacacacaagcccacgccttcatgtcaaaatgttgttgaacttctttatcattg 212  Q
     |||||| | |  |  || |||||||||| |||||| |||||||| || |||||| ||||  | ||||  |||||||| | ||||||||||||||||||     
T  13161096 agattcatgaatggttttagttactctcagaatatcgaaatcctccgatacacaaacccagactttcagatcaaaatggtcttgaacttctttatcatta 13160997  T
Q  213 taaacaagttgggcaagggtagtttt 238  Q
    |||| |||||||||||| || |||||    
T  13160996 taaagaagttgggcaagagtggtttt 13160971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 13 - 238
Target Start/End: Complemental strand, 13171247 - 13171022
Alignment:
Q  13 gatcatccaacacaaacaaaaatcttttctccctcgagattttctttaactcaactcgaaggacgtcaagattattgctatcccaagttctggaagtgac 112  Q
    |||| |||| ||| |||||||||||||| |||||| || |||  || || ||||||||||| |  |||||||||||| | || | |  ||| ||||||||    
T  13171247 gatcgtccagcactaacaaaaatcttttatccctcaagttttgattcaattcaactcgaagaaaatcaagattattgttttcaccacctcttgaagtgac 13171148  T
Q  113 cgattcaagtagagacttggttactctcataatatcaaaatcctcagacacacaagcccacgccttcatgtcaaaatgttgttgaacttctttatcattg 212  Q
     |||||| | |  |  || |||||||||| |||||| |||||||| || |||||| ||||  | ||||  |||||||| | ||||||||||||||||||     
T  13171147 agattcatgaatggttttagttactctcagaatatcgaaatcctccgatacacaaacccagactttcagatcaaaatggtcttgaacttctttatcatta 13171048  T
Q  213 taaacaagttgggcaagggtagtttt 238  Q
    |||| |||||||||||| || |||||    
T  13171047 taaagaagttgggcaagagtggtttt 13171022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 13 - 238
Target Start/End: Complemental strand, 13289881 - 13289656
Alignment:
Q  13 gatcatccaacacaaacaaaaatcttttctccctcgagattttctttaactcaactcgaaggacgtcaagattattgctatcccaagttctggaagtgac 112  Q
    |||| |||| ||| |||||||||||||| |||||| || |||  || |  |||||||||||    |||||||||||||| || | |  ||| ||||||||    
T  13289881 gatcgtccagcaccaacaaaaatcttttatccctcaagttttgattcagttcaactcgaagagaatcaagattattgctttcaccacctcttgaagtgac 13289782  T
Q  113 cgattcaagtagagacttggttactctcataatatcaaaatcctcagacacacaagcccacgccttcatgtcaaaatgttgttgaacttctttatcattg 212  Q
     |||||| | |  |  || |||||||||| |||||| |||||||| || |||||| ||||  | ||||  |||||||| | ||||||||||||||||||     
T  13289781 agattcatgaatggttttagttactctcaaaatatcgaaatcctccgatacacaaacccagactttcagatcaaaatggtcttgaacttctttatcatta 13289682  T
Q  213 taaacaagttgggcaagggtagtttt 238  Q
    |||| |||||||||||| || |||||    
T  13289681 taaagaagttgggcaagagtggtttt 13289656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 13 - 238
Target Start/End: Complemental strand, 13344305 - 13344080
Alignment:
Q  13 gatcatccaacacaaacaaaaatcttttctccctcgagattttctttaactcaactcgaaggacgtcaagattattgctatcccaagttctggaagtgac 112  Q
    |||| |||| ||| |||||||||||||| |||||| || |||  || || ||||||||||| |  |||||||||||| | || | |  ||| ||||||||    
T  13344305 gatcgtccagcactaacaaaaatcttttatccctcaagttttgattcaattcaactcgaagaaaatcaagattattgttttcaccacctcttgaagtgac 13344206  T
Q  113 cgattcaagtagagacttggttactctcataatatcaaaatcctcagacacacaagcccacgccttcatgtcaaaatgttgttgaacttctttatcattg 212  Q
     |||||| | |  |  || || ||||||| |||||| |||||||| || |||||| ||||  | ||||  |||||||| | ||||||||||||||||||     
T  13344205 agattcatgaatggttttagtgactctcagaatatcgaaatcctccgatacacaaacccagactttcagatcaaaatggtcttgaacttctttatcatta 13344106  T
Q  213 taaacaagttgggcaagggtagtttt 238  Q
    |||| |||||||||||| || |||||    
T  13344105 taaagaagttgggcaagagtggtttt 13344080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 114 - 238
Target Start/End: Complemental strand, 10517579 - 10517455
Alignment:
Q  114 gattcaagtagagacttggttactctcataatatcaaaatcctcagacacacaagcccacgccttcatgtcaaaatgttgttgaacttctttatcattgt 213  Q
    |||||||| | |||||||||| |||| |||| ||||||||||||||| |||||| |||| || || |  ||||||||||||| ||||| |  ||||||||    
T  10517579 gattcaaggatagacttggttgctctaataacatcaaaatcctcagatacacaaacccaggctttgaaatcaaaatgttgttcaacttttgcatcattgt 10517480  T
Q  214 aaacaagttgggcaagggtagtttt 238  Q
    ||||||  || |||||||| |||||    
T  10517479 aaacaaactgtgcaagggtcgtttt 10517455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 14 - 98
Target Start/End: Complemental strand, 10517700 - 10517616
Alignment:
Q  14 atcatccaacacaaacaaaaatcttttctccctcgagattttctttaactcaactcgaaggacgtcaagattattgctatcccaa 98  Q
    |||||| |||||||||||||||||||||||||||||| | || || || |||||||||||||  |||||||||| ||| ||||||    
T  10517700 atcatctaacacaaacaaaaatcttttctccctcgagttctttttcaattcaactcgaaggatatcaagattatcgctttcccaa 10517616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 114 - 238
Target Start/End: Complemental strand, 10527452 - 10527328
Alignment:
Q  114 gattcaagtagagacttggttactctcataatatcaaaatcctcagacacacaagcccacgccttcatgtcaaaatgttgttgaacttctttatcattgt 213  Q
    |||||||  ||||||||||||||||||| || ||| |||||||| || ||| || |||| ||||| |  |||||||| |||| ||| | || ||||||||    
T  10527452 gattcaatgagagacttggttactctcacaacatcgaaatcctctgatacataaacccaggccttgagatcaaaatggtgttcaaccttttcatcattgt 10527353  T
Q  214 aaacaagttgggcaagggtagtttt 238  Q
    |||||||||| |||||||| |||||    
T  10527352 aaacaagttgtgcaagggttgtttt 10527328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 14 - 98
Target Start/End: Original strand, 11781836 - 11781920
Alignment:
Q  14 atcatccaacacaaacaaaaatcttttctccctcgagattttctttaactcaactcgaaggacgtcaagattattgctatcccaa 98  Q
    |||||| |||||||||||||||||||||||||||||| | || || || |||||||||||||  |||||||||| ||| ||||||    
T  11781836 atcatctaacacaaacaaaaatcttttctccctcgagttctttttcaattcaactcgaaggatatcaagattatcgctttcccaa 11781920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 114 - 238
Target Start/End: Original strand, 11781957 - 11782081
Alignment:
Q  114 gattcaagtagagacttggttactctcataatatcaaaatcctcagacacacaagcccacgccttcatgtcaaaatgttgttgaacttctttatcattgt 213  Q
    |||||||| ||||||||||||| ||| | || ||| |||||||| || |||||| ||||  | || |  ||||||||||||| |||||    ||||||||    
T  11781957 gattcaaggagagacttggttattctaacaacatcgaaatcctccgatacacaaacccagactttgaaatcaaaatgttgttcaactttcacatcattgt 11782056  T
Q  214 aaacaagttgggcaagggtagtttt 238  Q
    ||||||| || |||||||| |||||    
T  11782057 aaacaagctgtgcaagggtcgtttt 11782081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 18 - 91
Target Start/End: Complemental strand, 10500785 - 10500712
Alignment:
Q  18 tccaacacaaacaaaaatcttttctccctcgagattttctttaactcaactcgaaggacgtcaagattattgct 91  Q
    ||||||||||||||||||||| | ||| || |   |||| ||||||||||| ||||||  ||||||||||||||    
T  10500785 tccaacacaaacaaaaatcttctatccatcaaatgtttcattaactcaacttgaaggatatcaagattattgct 10500712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 169; Significance: 1e-90; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 15 - 239
Target Start/End: Complemental strand, 26907111 - 26906887
Alignment:
Q  15 tcatccaacacaaacaaaaatcttttctccctcgagattttctttaactcaactcgaaggacgtcaagattattgctatcccaagttctggaagtgaccg 114  Q
    |||||||||||||||||||||||||||||||| ||| ||||| ||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||    
T  26907111 tcatccaacacaaacaaaaatcttttctcccttgagtttttccttaactcaactcgaaggacatcaagattattggtatcccaagttctggaagtgaccg 26907012  T
Q  115 attcaagtagagacttggttactctcataatatcaaaatcctcagacacacaagcccacgccttcatgtcaaaatgttgttgaacttctttatcattgta 214  Q
    ||||||| ||||| ||||||||||||||||||||||||||||||||||||||| |||| |||||||  ||||||||  ||||||||||||||||||||||    
T  26907011 attcaaggagagatttggttactctcataatatcaaaatcctcagacacacaaacccatgccttcaaatcaaaatgccgttgaacttctttatcattgta 26906912  T
Q  215 aacaagttgggcaagggtagttttt 239  Q
    || ||||||||||||||||||||||    
T  26906911 aagaagttgggcaagggtagttttt 26906887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 13 - 238
Target Start/End: Original strand, 135741 - 135966
Alignment:
Q  13 gatcatccaacacaaacaaaaatcttttctccctcgagattttctttaactcaactcgaaggacgtcaagattattgctatcccaagttctggaagtgac 112  Q
    |||| |||| ||| |||||||||||||| |||||| || |||  || || ||||||||||| |  |||||||||||| | || | |  ||| ||||||||    
T  135741 gatcgtccagcactaacaaaaatcttttatccctcaagttttgattcaattcaactcgaagaaaatcaagattattgttttcaccacctcttgaagtgac 135840  T
Q  113 cgattcaagtagagacttggttactctcataatatcaaaatcctcagacacacaagcccacgccttcatgtcaaaatgttgttgaacttctttatcattg 212  Q
     |||||| | |  |  || |||||||||| |||||| |||||||| || |||||| ||||  | ||||  |||||||| | ||||||||||||||||||     
T  135841 agattcatgaatggttttagttactctcagaatatcgaaatcctccgatacacaaacccagactttcagatcaaaatggtcttgaacttctttatcatta 135940  T
Q  213 taaacaagttgggcaagggtagtttt 238  Q
    |||| |||||||||||| || |||||    
T  135941 taaagaagttgggcaagagtggtttt 135966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 13 - 238
Target Start/End: Original strand, 145792 - 146017
Alignment:
Q  13 gatcatccaacacaaacaaaaatcttttctccctcgagattttctttaactcaactcgaaggacgtcaagattattgctatcccaagttctggaagtgac 112  Q
    |||| |||| ||| |||||||||||||| |||||| || |||  || || ||||||||||| |  |||||||||||| | || | |  ||| ||||||||    
T  145792 gatcgtccagcactaacaaaaatcttttatccctcaagttttgattcaattcaactcgaagaaaatcaagattattgttttcaccacctcttgaagtgac 145891  T
Q  113 cgattcaagtagagacttggttactctcataatatcaaaatcctcagacacacaagcccacgccttcatgtcaaaatgttgttgaacttctttatcattg 212  Q
     |||||| | |  |  || |||||||||| |||||| |||||||| || |||||| ||||  | ||||  |||||||| | ||||||||||||||||||     
T  145892 agattcatgaatggttttagttactctcagaatatcgaaatcctccgatacacaaacccagactttcagatcaaaatggtcttgaacttctttatcatta 145991  T
Q  213 taaacaagttgggcaagggtagtttt 238  Q
    |||| |||||||||||| || |||||    
T  145992 taaagaagttgggcaagagtggtttt 146017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 45; Significance: 1e-16; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 114 - 238
Target Start/End: Original strand, 17852898 - 17853022
Alignment:
Q  114 gattcaagtagagacttggttactctcataatatcaaaatcctcagacacacaagcccacgccttcatgtcaaaatgttgttgaacttctttatcattgt 213  Q
    |||||||| ||||||||||||||||||| || ||||||||| || || |||||| |||| || || |  |||||||| |||| ||| | || ||||||||    
T  17852898 gattcaaggagagacttggttactctcacaacatcaaaatcttctgatacacaaacccaggctttgagatcaaaatgatgttcaaccttttcatcattgt 17852997  T
Q  214 aaacaagttgggcaagggtagtttt 238  Q
    ||||||| || |||||||| |||||    
T  17852998 aaacaagctgtgcaagggtcgtttt 17853022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 146 - 229
Target Start/End: Original strand, 7128961 - 7129044
Alignment:
Q  146 atcaaaatcctcagacacacaagcccacgccttcatgtcaaaatgttgttgaacttctttatcattgtaaacaagttgggcaag 229  Q
    ||||||||| ||||| |||||| ||||    ||||  |||||||||||||| |||||||| |||||||| |||||||| |||||    
T  7128961 atcaaaatcatcagaaacacaaacccattttttcaactcaaaatgttgttgcacttctttgtcattgtatacaagttgagcaag 7129044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 146 - 229
Target Start/End: Complemental strand, 7482177 - 7482094
Alignment:
Q  146 atcaaaatcctcagacacacaagcccacgccttcatgtcaaaatgttgttgaacttctttatcattgtaaacaagttgggcaag 229  Q
    ||||||||| ||||| |||||| |||||   ||||  | |||||||||||| |||||||| |||||||| |||||||| |||||    
T  7482177 atcaaaatcatcagaaacacaaacccactttttcaactgaaaatgttgttgcacttctttgtcattgtatacaagttgagcaag 7482094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 14 - 172
Target Start/End: Complemental strand, 29836858 - 29836700
Alignment:
Q  14 atcatccaacacaaacaaaaatcttttctccctcgagattttctttaactcaactcgaaggacgtcaagattattgctatcccaagttctggaagtgacc 113  Q
    ||||||||| |||| |||||||||||| |   || |  ||||||| || ||||||||||| |  ||||| |||||| ||| |||   ||| ||||||||     
T  29836858 atcatccaatacaatcaaaaatcttttgttgttcaaatttttcttcaattcaactcgaagaagatcaaggttattggtattccattctcttgaagtgaca 29836759  T
Q  114 gattcaagtagagacttggttactctcataatatcaaaatcctcagacacacaagccca 172  Q
      |||||| ||||| |||||||||||||  ||||||||||| |||||||||||| ||||    
T  29836758 acttcaaggagagatttggttactctcaacatatcaaaatcttcagacacacaaaccca 29836700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 114 - 238
Target Start/End: Complemental strand, 11485132 - 11485008
Alignment:
Q  114 gattcaagtagagacttggttactctcataatatcaaaatcctcagacacacaagcccacgccttcatgtcaaaatgttgttgaacttctttatcattgt 213  Q
    |||||||| || ||||||||||  ||||  | ||| |||||||| || |||||| |||| || || |  |||||||| |||| ||||| || ||| ||||    
T  11485132 gattcaaggagggacttggttatcctcacgacatcgaaatcctccgatacacaaacccatgctttgagatcaaaatgctgttcaactttttcatcgttgt 11485033  T
Q  214 aaacaagttgggcaagggtagtttt 238  Q
    |||||||||| |||||||| |||||    
T  11485032 aaacaagttgtgcaagggtcgtttt 11485008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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