View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13914_low_26 (Length: 210)
Name: NF13914_low_26
Description: NF13914
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13914_low_26 |
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Alignment Details
Target: chr5 (Bit Score: 148; Significance: 3e-78; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 20 - 195
Target Start/End: Original strand, 32783558 - 32783733
Alignment:
| Q |
20 |
caagcgcctcccaaagcacgctaacatccatattagtaaatataaagtccttttgaaagagagagaagcaagcaaaacatcgttttaaataagaaggtaa |
119 |
Q |
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| T |
32783558 |
caagcacctcccaaagcatcctaacatccatattagtaaatgtaaagtccttttgaaagagggagaagcaagtaaaacatcgttttaaataagaaggtaa |
32783657 |
T |
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| Q |
120 |
ctgatcataacttaatttgatagcaggcaaaatgtcatcttctttttgaggtaaattccaaatttcactgtctctg |
195 |
Q |
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| T |
32783658 |
ctgatcgtaacttaatttgatagcaggcaaaatgtcatcttctttttgaggtaaattccaaatttcactgtctctg |
32783733 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 105; Significance: 1e-52; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 63 - 195
Target Start/End: Complemental strand, 49352668 - 49352536
Alignment:
| Q |
63 |
aaagtccttttgaaagagagagaagcaagcaaaacatcgttttaaataagaaggtaactgatcataacttaatttgatagcaggcaaaatgtcatcttct |
162 |
Q |
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||||| ||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||| |
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| T |
49352668 |
aaagttcttttcaaagagagagaagcaagcaaaacattgttttaaataagaaggtaactgatcataacttaatttgagaccaggcaaaatgtcatcttct |
49352569 |
T |
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| Q |
163 |
ttttgaggtaaattccaaatttcactgtctctg |
195 |
Q |
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| T |
49352568 |
ttttgtggtaaattccaaatctcactgtctctg |
49352536 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 92; E-Value: 7e-45
Query Start/End: Original strand, 29 - 191
Target Start/End: Complemental strand, 49341324 - 49341164
Alignment:
| Q |
29 |
cccaaagcacgctaacatccatattagtaaatataaagtccttttgaaagagagagaagcaagcaaaacatcgttttaaataagaaggtaactgatcata |
128 |
Q |
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| T |
49341324 |
cccatagcacactaacatcaaaattaataaatggaaagtacttttcaaagagagagaagcaagcaaaacattgttttaaataagaaggtaactgatcata |
49341225 |
T |
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| Q |
129 |
acttaatttgatagcaggcaaaatgtcatcttctttttgaggtaaattccaaatttcactgtc |
191 |
Q |
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|||| ||||||||||| ||||||||| || |||||||| ||||||| ||||||||||||||| |
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| T |
49341224 |
actt--tttgatagcagacaaaatgtcgtcatctttttgtggtaaatcccaaatttcactgtc |
49341164 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 80; Significance: 1e-37; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 76 - 191
Target Start/End: Original strand, 29602247 - 29602362
Alignment:
| Q |
76 |
aagagagagaagcaagcaaaacatcgttttaaataagaaggtaactgatcataacttaatttgatagcaggcaaaatgtcatcttctttttgaggtaaat |
175 |
Q |
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||||| |||||||| ||||||||||||||||||||||| ||||| |||||| ||||||||||||||||||||||||| |||||||||||||| ||||||| |
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| T |
29602247 |
aagagggagaagcaggcaaaacatcgttttaaataagatggtaattgatcaaaacttaatttgatagcaggcaaaatatcatcttctttttgtggtaaat |
29602346 |
T |
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| Q |
176 |
tccaaatttcactgtc |
191 |
Q |
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| T |
29602347 |
tccaaatctcattgtc |
29602362 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 20 - 191
Target Start/End: Complemental strand, 29744070 - 29743899
Alignment:
| Q |
20 |
caagcgcctcccaaagcacgctaacatccatattagtaaatataaagtccttttgaaagagagagaagcaagcaaaacatcgttttaaataagaaggtaa |
119 |
Q |
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|||| |||||||||||||| | |||| ||||| |||||| |||||| ||| |||||| |||||||| |||||||||||||| |||||||| ||||| |
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| T |
29744070 |
caagagcctcccaaagcacagtgacatgattattactaaatacaaagtcttttacaaagagggagaagcaggcaaaacatcgtttcaaataagacggtaa |
29743971 |
T |
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| Q |
120 |
ctgatcataacttaatttgatagcaggcaaaatgtcatcttctttttgaggtaaattccaaatttcactgtc |
191 |
Q |
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| T |
29743970 |
ttgatcaaaacttaatttgatagcaggcaaaatatcatcttttttttgtggtaaattccaaatctcattgtc |
29743899 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 75 - 191
Target Start/End: Complemental strand, 29751048 - 29750932
Alignment:
| Q |
75 |
aaagagagagaagcaagcaaaacatcgttttaaataagaaggtaactgatcataacttaatttgatagcaggcaaaatgtcatcttctttttgaggtaaa |
174 |
Q |
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|||||| |||||||| |||||||||||||||||||| || ||||| |||||| |||||||||||| |||||||||||| |||||||||||||| |||||| |
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| T |
29751048 |
aaagagggagaagcaggcaaaacatcgttttaaatatgagggtaattgatcaaaacttaatttgagagcaggcaaaatatcatcttctttttgtggtaaa |
29750949 |
T |
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| Q |
175 |
ttccaaatttcactgtc |
191 |
Q |
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|||||||| ||| |||| |
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| T |
29750948 |
ttccaaatctcattgtc |
29750932 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 72; Significance: 6e-33; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 64 - 191
Target Start/End: Complemental strand, 35158177 - 35158050
Alignment:
| Q |
64 |
aagtccttttgaaagagagagaagcaagcaaaacatcgttttaaataagaaggtaactgatcataacttaatttgatagcaggcaaaatgtcatcttctt |
163 |
Q |
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||||| |||| |||||| ||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||| || || |||||||| || |||| |
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| T |
35158177 |
aagtctttttcaaagagggagaagcaagcaaaacactgttttaaataagaaggtaattgatcataacttaatttgattgctggtaaaatgtcctcgtctt |
35158078 |
T |
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| Q |
164 |
tttgaggtaaattccaaatttcactgtc |
191 |
Q |
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|||| |||||||||||||| ||| |||| |
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| T |
35158077 |
tttgcggtaaattccaaatctcattgtc |
35158050 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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