View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13914_low_3 (Length: 660)
Name: NF13914_low_3
Description: NF13914
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13914_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 384; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 10 - 481
Target Start/End: Complemental strand, 32605034 - 32604551
Alignment:
| Q |
10 |
caaaccaatctggaaccacatgaaagcattttcgaatcctatttataatttagggataaaaatagttcaagcctaatatgaaattatata---------- |
99 |
Q |
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| T |
32605034 |
caaaccaatatggaaccacatgaaagcattttcgaatcctatttataatttagggataaaaatagttcaagcctaatatgaaattatatatgttggaaca |
32604935 |
T |
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| Q |
100 |
---gaatatactagtgcgtgagttgaaaaattctggaaattcctcatagagctcacacaatattaatgtttataaggtggaggtaggatccttgaggcga |
196 |
Q |
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| T |
32604934 |
ctagaatatactagtgcgtgagttgaaaaattctggaaattcctcatagagctcacacaatattaatgtttataaggtggaggtaggatccttgaggtga |
32604835 |
T |
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| Q |
197 |
gacacaagggatgtccatttttatgaatggcatatgacacgatcaacttgatcaacagagacgcgtgccgtcgtttaatttgtcttgggaatttacnnnn |
296 |
Q |
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| T |
32604834 |
gacacaagagatgtccatttttatgaatggcatatgacacgatcaacttgatcaacagagacgcgtgccgtcgtttaatttgtcttgggaatttactttt |
32604735 |
T |
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| Q |
297 |
nnngaaaatgttggtttcaacccatgtcaaatctcgtcacacattttgctaacatcattgtacgttcgaccttccattttctatcgtatgtgcaatctga |
396 |
Q |
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| T |
32604734 |
tttg-aaatgttggtttcaacccatgtcaaatctcgtcgcacattttgctaacatcattgtgcgttcgaccttccattttctatggtatgtgcaacctga |
32604636 |
T |
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| Q |
397 |
gccatcttgttttttactcttattgttttcaacactatgaatagaaatctaaggctccatcccaaatcacatgaaagcttccaag |
481 |
Q |
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| T |
32604635 |
gccatcttgttttttactcttattgttttcaacactatgaatagaaatctaaggctccatcccaaatcacatgaaagcttccaag |
32604551 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 573 - 640
Target Start/End: Complemental strand, 32604444 - 32604377
Alignment:
| Q |
573 |
ttgtcccttaggaagtttgagtggtcctagttgcctattgaaggagtggttctagaatggaacataaa |
640 |
Q |
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| T |
32604444 |
ttgtcccttaggaagtttgagtggtcctagttccctattgaaggagtggttctagaatggaacataaa |
32604377 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 542 - 581
Target Start/End: Complemental strand, 32604490 - 32604451
Alignment:
| Q |
542 |
gtccctcgtaataagttgccctattagaatcttgtccctt |
581 |
Q |
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| T |
32604490 |
gtccctcgtaataagttggcctattaggatcttgtccctt |
32604451 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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