View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13914_low_4 (Length: 522)
Name: NF13914_low_4
Description: NF13914
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13914_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 280; Significance: 1e-156; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 280; E-Value: 1e-156
Query Start/End: Original strand, 216 - 503
Target Start/End: Complemental strand, 32856328 - 32856041
Alignment:
| Q |
216 |
aatgacaaaggttagtaattagttgttaaatttagatctatttctttgtccacgttcgaacccagaacccccaactctttctctcttaactcaaagcaag |
315 |
Q |
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| T |
32856328 |
aatgacaaaggttagtaattagttgttaaatttagatctatttctctgtccacgttcgaacccagaacccccaactctttctctcttaactcaaagcaag |
32856229 |
T |
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| Q |
316 |
agctatccaaccctctctcatccgtggtttctaatttggggaaaatgttagattagaaatagattaaaaagtgtatctgtttctacataaattgtgcaga |
415 |
Q |
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| T |
32856228 |
agctatccaaccctctctcatccgtggtttctaatttggggaaaatgttagattagaaatagattaaaaagtgtatctgtttctacataaattgtgcaga |
32856129 |
T |
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| Q |
416 |
aattaaagtgtgatttctttccaaagagagatgatttattgggtgatggtagtagccacagagtgcagaacagttacagtgctttgaa |
503 |
Q |
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| T |
32856128 |
aattaaagtgtgatttctttccaaagagagatgatttattgggtgacggtagtagccacagagtgcagaacagttacagtgctttgaa |
32856041 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 167; E-Value: 3e-89
Query Start/End: Original strand, 17 - 191
Target Start/End: Complemental strand, 32856536 - 32856362
Alignment:
| Q |
17 |
cacagattcacaatctcactttcactgtcatagaacagagtcctccgccacaaccgtagcggcatcaggtatatcttccactgccatctctttcagtgaa |
116 |
Q |
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| T |
32856536 |
cacagattcacaatctcactctcaccgtcatagaacagagtcctccgccacaaccgtagcggcatcaggtatatcttccactgccatctctttcagtgaa |
32856437 |
T |
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| Q |
117 |
ttgctggttagttagggtttctgctttgagtgtgaactctaacagatctctgtgcatctaagttcttcatgttgg |
191 |
Q |
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| T |
32856436 |
ttgctggttagttagggtttctgctttgagtgtgaactctaacagatctctgtgcatctaagttcttcatgttgg |
32856362 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 99 - 156
Target Start/End: Complemental strand, 32853391 - 32853334
Alignment:
| Q |
99 |
gccatctctttcagtgaattgctggttagttagggtttctgctttgagtgtgaactct |
156 |
Q |
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| T |
32853391 |
gccatctatttcagtgaattgttggttagttagggtttctgatttgagcgtgaactct |
32853334 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 368 - 469
Target Start/End: Complemental strand, 32850766 - 32850670
Alignment:
| Q |
368 |
ttagaaatagattaaaaagtgtatctgtttctacataaattgtgcagaaattaaagtgtgatttctttccaaagagagatgatttattgggtgatggtag |
467 |
Q |
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| T |
32850766 |
ttagaaatagatgaaaaagtgtagctgtttctgcataaattgtgcag-----gaagtgtgattaccttgcaaagatagatgatttactaggtgacggtag |
32850672 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 215 - 247
Target Start/End: Original strand, 10223394 - 10223426
Alignment:
| Q |
215 |
taatgacaaaggttagtaattagttgttaaatt |
247 |
Q |
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| T |
10223394 |
taatgacaaatgttagtaattagttgttaaatt |
10223426 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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