View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13914_low_6 (Length: 471)

Name: NF13914_low_6
Description: NF13914
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13914_low_6
NF13914_low_6
[»] chr5 (17 HSPs)
chr5 (107-360)||(1157572-1157824)
chr5 (181-395)||(6989309-6989523)
chr5 (108-395)||(7767379-7767678)
chr5 (107-360)||(41355856-41356117)
chr5 (213-359)||(21600705-21600850)
chr5 (194-320)||(38958579-38958705)
chr5 (108-360)||(18696516-18696777)
chr5 (108-395)||(27170462-27170761)
chr5 (111-300)||(7271392-7271577)
chr5 (176-397)||(6030744-6030975)
chr5 (173-300)||(26656310-26656436)
chr5 (173-300)||(26927897-26928023)
chr5 (226-389)||(1377706-1377881)
chr5 (224-300)||(25444511-25444588)
chr5 (174-307)||(27632472-27632607)
chr5 (174-294)||(36608145-36608267)
chr5 (299-360)||(7270163-7270224)
[»] chr7 (9 HSPs)
chr7 (118-375)||(11698704-11698962)
chr7 (186-360)||(3301935-3302121)
chr7 (184-395)||(29550068-29550266)
chr7 (107-301)||(39020545-39020729)
chr7 (175-360)||(1778086-1778284)
chr7 (229-276)||(47588737-47588784)
chr7 (174-275)||(5893195-5893297)
chr7 (224-276)||(36933946-36933998)
chr7 (332-360)||(39020785-39020813)
[»] chr4 (14 HSPs)
chr4 (109-395)||(53201735-53202023)
chr4 (107-395)||(34227344-34227632)
chr4 (107-360)||(47518802-47519052)
chr4 (109-300)||(6409594-6409786)
chr4 (108-278)||(23054622-23054793)
chr4 (243-360)||(31360549-31360666)
chr4 (213-395)||(14566436-14566630)
chr4 (170-274)||(24958003-24958107)
chr4 (227-276)||(14791946-14791995)
chr4 (169-269)||(50589289-50589390)
chr4 (296-354)||(23054823-23054881)
chr4 (224-307)||(12887961-12888045)
chr4 (169-269)||(23533066-23533167)
chr4 (225-269)||(28149606-28149650)
[»] chr2 (9 HSPs)
chr2 (107-389)||(3921083-3921365)
chr2 (107-360)||(1894922-1895175)
chr2 (107-395)||(1551937-1552226)
chr2 (215-395)||(17282398-17282577)
chr2 (192-395)||(17374786-17375000)
chr2 (109-395)||(4869102-4869398)
chr2 (176-300)||(34659832-34659955)
chr2 (107-202)||(17282308-17282403)
chr2 (228-276)||(3257982-3258030)
[»] chr6 (6 HSPs)
chr6 (107-395)||(20740078-20740374)
chr6 (108-300)||(21880996-21881187)
chr6 (173-395)||(3523971-3524206)
chr6 (192-356)||(34213820-34213996)
chr6 (224-275)||(22696255-22696306)
chr6 (225-278)||(34503274-34503327)
[»] chr1 (6 HSPs)
chr1 (108-347)||(34117577-34117816)
chr1 (219-360)||(25791142-25791283)
chr1 (168-300)||(34654516-34654648)
chr1 (109-360)||(615249-615511)
chr1 (171-356)||(39709413-39709611)
chr1 (224-307)||(32947228-32947312)
[»] chr8 (4 HSPs)
chr8 (168-395)||(10408297-10408536)
chr8 (173-395)||(20860768-20861009)
chr8 (168-300)||(6443596-6443728)
chr8 (177-300)||(5994189-5994312)
[»] chr3 (7 HSPs)
chr3 (176-300)||(18270131-18270254)
chr3 (108-360)||(43275457-43275711)
chr3 (227-396)||(893410-893591)
chr3 (169-276)||(25498548-25498656)
chr3 (224-299)||(17113970-17114046)
chr3 (300-360)||(18270266-18270326)
chr3 (223-275)||(27741608-27741659)
[»] scaffold0005 (2 HSPs)
scaffold0005 (213-395)||(250745-250939)
scaffold0005 (227-276)||(47736-47785)
[»] scaffold0009 (1 HSPs)
scaffold0009 (224-300)||(54040-54117)


Alignment Details
Target: chr5 (Bit Score: 162; Significance: 3e-86; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 162; E-Value: 3e-86
Query Start/End: Original strand, 107 - 360
Target Start/End: Original strand, 1157572 - 1157824
Alignment:
Q  107 atgaggtgtgttttggatgaaggtgcttagaaaagctaatggttgtgtttgagnnnnnnnncccggctgttttccaaaagttgttggttgtggtgtaggt 206  Q
    |||||||||||||||||||||||||||||| | |||||||||| ||||||| |        || | ||||||| |||| ||||||||||||||||||| |    
T  1157572 atgaggtgtgttttggatgaaggtgcttaggagagctaatggtggtgtttggggtttttttcc-gactgtttttcaaaggttgttggttgtggtgtagat 1157670  T
Q  207 ttttaagttggtgttcaggggttgtgtgcgagcaacggaatgtgggtggtagaagttgtttttgtggcagttgtgacgatgcttgaggattttgtttatg 306  Q
    ||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1157671 ttttaagttggtgttcaggggttatgtgcgagcagcggaatgtgggtggtagaagttgtttttgtggcagttgtgacgatgcttgaggattttgtttatg 1157770  T
Q  307 ttgttttgttgatcgaagtgttaacattgttttggtgtttctatttattgattt 360  Q
    |||||| ||||||||  |||||| | ||||||||||||||||||||||||||||    
T  1157771 ttgtttcgttgatcgtggtgttagctttgttttggtgtttctatttattgattt 1157824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 181 - 395
Target Start/End: Complemental strand, 6989523 - 6989309
Alignment:
Q  181 caaaagttgttggttgtggtgtaggtttttaagttggtgttcaggggttgtgtgcgagcaacggaatgtgggtggtagaagttgtttttgtggcagttgt 280  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  6989523 caaaggttgttggttgtggtgtaggtttttaagttggtgttcaggggttgtgtgcgagcagcggaatgtgggtggtagaagttgtttttgtggcagttgt 6989424  T
Q  281 gacgatgcttgaggattttgtttatgttgttttgttgatcgaagtgttaacattgttttggtgtttctatttattgatttatgagatgaccctttatcaa 380  Q
    |||||||||||||||||||||||||||||||| ||||||||  |||||| | ||||||| ||||||||||||||||||||  |||||  |||||| | |     
T  6989423 gacgatgcttgaggattttgtttatgttgtttcgttgatcgtggtgttagctttgtttttgtgtttctatttattgatttcggagatagccctttgttag 6989324  T
Q  381 gaggcgtttcctata 395  Q
    ||| |||||||||||    
T  6989323 gagacgtttcctata 6989309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 108 - 395
Target Start/End: Original strand, 7767379 - 7767678
Alignment:
Q  108 tgaggtgtgttttggatgaaggtgcttagaaaagctaatggttgtgtttgagnnnnnnnncccggctgttttccaaaagttgttggttgtggtgtaggtt 207  Q
    ||||||||||||||||||||||||||| | | |||||||||| || |||| |        |||||||||||| |||| |||||||||||| |||||||||    
T  7767379 tgaggtgtgttttggatgaaggtgcttgggagagctaatggtggtctttggggttttattcccggctgtttttcaaaggttgttggttgttgtgtaggtt 7767478  T
Q  208 tttaagttggtgttcaggggttgtgtgcgagcaacggaatgtgggtggtagaagttgtttttgtggcagttgtgacgatgcttgagga------------ 295  Q
    |||||||||||||||| |||||||||||||||| || |||||||||||| |||||||||||||||||||||| ||||||| |||||||                
T  7767479 tttaagttggtgttcaagggttgtgtgcgagcagcgaaatgtgggtggtggaagttgtttttgtggcagttgcgacgatgtttgaggattttggtacaac 7767578  T
Q  296 ttttgtttatgttgttttgttgatcgaagtgttaacattgttttggtgtttctatttattgatttatgagatgaccctttatcaagaggcgtttcctata 395  Q
    ||||||||||||||||  ||||||||  |||||| | |||||||||||||| |||||||||||||  ||||| ||||||| | | |||||||||||||||    
T  7767579 ttttgtttatgttgttccgttgatcgtggtgttagctttgttttggtgtttatatttattgattttggagataaccctttgttaggaggcgtttcctata 7767678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 107 - 360
Target Start/End: Original strand, 41355856 - 41356117
Alignment:
Q  107 atgaggtgtgttttggatgaaggtgcttagaaaagctaatggttgtgtttgagnnnnnnnncccggctgttttccaaaagttgttggttgtggtgtaggt 206  Q
    ||||| |||||||||| ||||||||| ||| | |||||||||| ||||||  |        |||| || |||| |||| ||||| |||||||||||||||    
T  41355856 atgagatgtgttttgggtgaaggtgcgtaggagagctaatggtggtgttttgggtttttttcccgactatttttcaaatgttgtaggttgtggtgtaggt 41355955  T
Q  207 ttttaagttggtgttcaggggttgtgtgcgagcaacggaatgtgggtggtagaagttgtttttgtggcagtt--------gtgacgatgcttgaggattt 298  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||| ||         ||| |||||||| ||||||    
T  41355956 ttttaagttggtgttcaggggttgtgtgcgagcagcggaatgtgggtggtagaagttatttttgtggcaattatgatgaattgatgatgcttggggattt 41356055  T
Q  299 tgtttatgttgttttgttgatcgaagtgttaacattgttttggtgtttctatttattgattt 360  Q
    |||||||||||||| ||||||||  |||||| | ||||||| ||||||||||||||||||||    
T  41356056 tgtttatgttgtttcgttgatcgtggtgttagctttgttttagtgtttctatttattgattt 41356117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 213 - 359
Target Start/End: Complemental strand, 21600850 - 21600705
Alignment:
Q  213 gttggtgttcaggggttgtgtgcgagcaacggaatgtgggtggtagaagttgtttttgtggcagttgtgacgatgcttgaggattttgtttatgttgttt 312  Q
    |||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  21600850 gttggtgttcaggg-ttgtgtgcgagcagcggaatgtgggtggtagaagttgtttttgtggcagttgtgacgatgtttgaggattttgtttatgttgttt 21600752  T
Q  313 tgttgatcgaagtgttaacattgttttggtgtttctatttattgatt 359  Q
     |||| |||   ||||| | |||||||||||||||||||||||||||    
T  21600751 cgttgttcgtgatgttagctttgttttggtgtttctatttattgatt 21600705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 194 - 320
Target Start/End: Original strand, 38958579 - 38958705
Alignment:
Q  194 ttgtggtgtaggtttttaagttggtgttcaggggttgtgtgcgagcaacggaatgtgggtggtagaagttgtttttgtggcagttgtgacgatgcttgag 293  Q
    |||||||||||||||||||||||||||||| |||||||||||| |||  |||||||||||||||||||||||||||||| |||| |||||||||||||||    
T  38958579 ttgtggtgtaggtttttaagttggtgttcatgggttgtgtgcgggcagtggaatgtgggtggtagaagttgtttttgtgtcagtagtgacgatgcttgag 38958678  T
Q  294 gattttgtttatgttgttttgttgatc 320  Q
    ||||||||||||||||||| |||||||    
T  38958679 gattttgtttatgttgtttcgttgatc 38958705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 108 - 360
Target Start/End: Complemental strand, 18696777 - 18696516
Alignment:
Q  108 tgaggtgtgttttggatgaaggtgcttagaaaagctaatggttgtgtttgagnnnnnnnncccggctgttttccaaaagttgttggttgtggtgtaggtt 207  Q
    |||||||||||| || ||||||||||| | | |||||| ||| ||||||| |        |||  ||||||| |||| ||||||||||| |||||| |||    
T  18696777 tgaggtgtgtttcgggtgaaggtgcttgggagagctaacggtggtgtttggggttttatccccaactgtttttcaaaggttgttggttgcggtgtatgtt 18696678  T
Q  208 tttaagttggtgttcaggggttgtgtg---------cgagcaacggaatgtgggtggtagaagttgtttttgtggcagttgtgacgatgcttgaggattt 298  Q
    |||||||||||||||||||||||||||         ||||||  ||||||||||||||  |||||||| |||||||||||| ||||||||||||||||||    
T  18696677 tttaagttggtgttcaggggttgtgtgggttgtgtgcgagcagtggaatgtgggtggtgaaagttgttattgtggcagttgcgacgatgcttgaggattt 18696578  T
Q  299 tgtttatgttgttttgttgatcgaagtgttaacattgttttggtgtttctatttattgattt 360  Q
    ||||||||||||||  ||||||   |||||| | ||||||||||||||||||||||||||||    
T  18696577 tgtttatgttgtttctttgatcatggtgttagctttgttttggtgtttctatttattgattt 18696516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 108 - 395
Target Start/End: Original strand, 27170462 - 27170761
Alignment:
Q  108 tgaggtgtgttttggatgaaggtgcttagaaaagctaatggttgtgtttgagnnnnnnnncccggctgttttccaaaagttgttggttgtggtgtaggtt 207  Q
    ||||||||||||| | | ||||||||| | | |||||||||| ||||||| |        |||| ||||||| ||||  |||| || ||| |||||||||    
T  27170462 tgaggtgtgttttcggtaaaggtgcttgggagagctaatggtggtgtttggggttttattcccgactgtttttcaaagattgtcggctgttgtgtaggtt 27170561  T
Q  208 tttaagttggtgttcaggggttgtgtgcgagcaacggaatgtgggtggtagaagttgtttttgtggcagttgtgacgatgcttgagga------------ 295  Q
    ||||||||||||||| || | |||||||||| |  |||||||||||||| |||||| ||||||||||||||||||||||| |||||||                
T  27170562 tttaagttggtgttctggtgctgtgtgcgagtagtggaatgtgggtggtggaagttatttttgtggcagttgtgacgatgtttgaggattttggtacaac 27170661  T
Q  296 ttttgtttatgttgttttgttgatcgaagtgttaacattgttttggtgtttctatttattgatttatgagatgaccctttatcaagaggcgtttcctata 395  Q
    |||||||||||||||||  |||||||  |||||| | |||||||||||||||||||||||| |||  |||||  || ||| | | |||||||||||||||    
T  27170662 ttttgtttatgttgtttcattgatcgtggtgttagctttgttttggtgtttctatttattggtttcggagatagccatttgttaggaggcgtttcctata 27170761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 111 - 300
Target Start/End: Complemental strand, 7271577 - 7271392
Alignment:
Q  111 ggtgtgttttggatgaaggtgcttagaaaagctaatggttgtgtttgagnnnnnnnncccggctgttttccaaaagttgttggttgtggtgtaggttttt 210  Q
    ||||||||||||||||||||||||   | |||||| ||| ||||||| |        |||| ||||||| |||| |||||||||||  ||||||||||||    
T  7271577 ggtgtgttttggatgaaggtgcttgagagagctaagggtggtgtttggggttttattcccgactgtttttcaaaggttgttggttgctgtgtaggttttt 7271478  T
Q  211 aagttggtgttcaggggttgtgtgcgagcaacggaatgtgggtggtagaagttgtttttgtggcagttgtgacgatgcttgaggattttg 300  Q
    ||||||  |||||||||||||||||||||| |||||| ||||||||  |||||||||||||    |||||||||||| ||||||||||||    
T  7271477 aagttgacgttcaggggttgtgtgcgagcagcggaatatgggtggtgaaagttgtttttgt----gttgtgacgatgtttgaggattttg 7271392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 176 - 397
Target Start/End: Original strand, 6030744 - 6030975
Alignment:
Q  176 ttttccaaaagttgttggttgtggtgtaggtttttaagttggtgttcaggggttgtgtgcgagcaacggaatgtgggtggtagaagttgtttttgtggca 275  Q
    |||| |||| |||||||||||| |||||| |||||||||||||||||||||||| |||||||||| |||||| ||| ||||  |||||||||||||||      
T  6030744 tttttcaaaggttgttggttgttgtgtag-tttttaagttggtgttcaggggttttgtgcgagcagcggaatatggatggtgaaagttgtttttgtgg-t 6030841  T
Q  276 gttgtgacgatgcttgaggattt------------tgtttatgttgttttgttgatcgaagtgttaacattgttttggtgtttctatttattgatttatg 363  Q
    |||||||||||| ||||||||||            |||||||||||||| ||||||||   |||||   | ||||||||||||||||| ||||||||  |    
T  6030842 gttgtgacgatgtttgaggattttggtaccacatatgtttatgttgtttcgttgatcgtgctgttagattggttttggtgtttctattaattgatttcag 6030941  T
Q  364 agatgaccctttatcaagaggcgtttcctataag 397  Q
    ||||| ||||||   | |||||||||||||||||    
T  6030942 agatggccctttgctaggaggcgtttcctataag 6030975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 173 - 300
Target Start/End: Complemental strand, 26656436 - 26656310
Alignment:
Q  173 ctgttttccaaaagttgttggttgtggtgtaggtttttaagttggtgttcaggggttgtgtgcgagcaacggaatgtgggtggtagaagttgtttttgtg 272  Q
    ||||||| |||| |||||||||||| |||||||||||||||||| ||||||||||| |||||| || | | |||| ||||||||  ||||||||||||||    
T  26656436 ctgtttttcaaaggttgttggttgttgtgtaggtttttaagttgatgttcaggggtcgtgtgcaagaagcagaatatgggtggtgaaagttgtttttgtg 26656337  T
Q  273 gcagttgtgacgatgcttgaggattttg 300  Q
    |  ||||||| |||| |||| |||||||    
T  26656336 g-tgttgtgaagatgtttgaagattttg 26656310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 173 - 300
Target Start/End: Complemental strand, 26928023 - 26927897
Alignment:
Q  173 ctgttttccaaaagttgttggttgtggtgtaggtttttaagttggtgttcaggggttgtgtgcgagcaacggaatgtgggtggtagaagttgtttttgtg 272  Q
    ||||||| |||| |||||||||||| |||||||||||||||||| ||||||||||| |||||| || | | |||| ||||||||  ||||||||||||||    
T  26928023 ctgtttttcaaaggttgttggttgttgtgtaggtttttaagttgatgttcaggggtcgtgtgcaagaagcagaatatgggtggtgaaagttgtttttgtg 26927924  T
Q  273 gcagttgtgacgatgcttgaggattttg 300  Q
    |  ||||||| |||| |||| |||||||    
T  26927923 g-tgttgtgaagatgtttgaagattttg 26927897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 226 - 389
Target Start/End: Complemental strand, 1377881 - 1377706
Alignment:
Q  226 ggttgtgtgcgagcaacggaatgtgggtggtagaagttgtttttgtggcagttgtgacgatgcttgaggatttt------------gtttatgttgtttt 313  Q
    ||||||||||||||| |||||||||    || ||| |||||||||||||||||| ||||||| || ||||||||            | |||||||||||     
T  1377881 ggttgtgtgcgagcagcggaatgtgaaaagtggaaattgtttttgtggcagttgcgacgatgtttaaggatttttgtataacttttgattatgttgtttc 1377782  T
Q  314 gttgatcgaagtgttaacattgttttggtgtttctatttattgatttatgagatgaccctttatcaagaggcgttt 389  Q
    ||||||||  ||||||   ||||||||||||||||||||||| ||||  ||||| | ||||| | | |||||||||    
T  1377781 gttgatcgtggtgttagttttgttttggtgtttctatttattaatttcggagataatcctttgttaggaggcgttt 1377706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 224 - 300
Target Start/End: Original strand, 25444511 - 25444588
Alignment:
Q  224 ggggttgtgtgcgagcaacggaatgtgggtggtagaagttgtttttgtggcag-ttgtgacgatgcttgaggattttg 300  Q
    |||||||||||||| || |||||||| |||||| |||||||||||||| |||| ||| || |||| |||||| |||||    
T  25444511 ggggttgtgtgcgatcagcggaatgtaggtggtggaagttgtttttgtagcagcttgcgatgatgtttgagggttttg 25444588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 174 - 307
Target Start/End: Original strand, 27632472 - 27632607
Alignment:
Q  174 tgttttccaaaagttgttggttgtggtgtaggtttttaa-gttggtgttcaggggttgtgtgcgagcaacggaatgtgggtggtagaagttgtttttgtg 272  Q
    |||||| |||| | |||||||||| |||| |||| || | |||| || | |||||||||||||||||| | | |||| |||||| |||||  ||||||||    
T  27632472 tgtttttcaaaggctgttggttgttgtgttggttgttgacgttgctgattaggggttgtgtgcgagcagcaggatgtaggtggtggaagtaatttttgtg 27632571  T
Q  273 gcag-ttgtgacgatgcttgaggattttgtttatgt 307  Q
    |||| |||||||  || |||||| |||| |||||||    
T  27632572 gcagcttgtgacattggttgagggttttttttatgt 27632607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 174 - 294
Target Start/End: Original strand, 36608145 - 36608267
Alignment:
Q  174 tgttttccaaaagttgttggttgtggtgtaggtttttaag-ttggtgttcaggggttgtgtgcgagcaacggaatgtgggtggtagaagttgtttttgtg 272  Q
    |||||| |||| |||||| ||||| |||| ||||||| |  ||| |||| |||||||||| ||||||| |||| |||  |||||  ||||||||||||||    
T  36608145 tgtttttcaaaggttgttcgttgttgtgttggtttttgacattgttgtttaggggttgtgcgcgagcagcggagtgtaagtggtgaaagttgtttttgtg 36608244  T
Q  273 gcag-ttgtgacgatgcttgagg 294  Q
     ||| |||||||| || ||||||    
T  36608245 tcagcttgtgacgttggttgagg 36608267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 299 - 360
Target Start/End: Complemental strand, 7270224 - 7270163
Alignment:
Q  299 tgtttatgttgttttgttgatcgaagtgttaacattgttttggtgtttctatttattgattt 360  Q
    |||||||||||||| ||||||||   ||||| | | ||||||||||||||||| ||||||||    
T  7270224 tgtttatgttgtttcgttgatcgtgctgttagcttggttttggtgtttctattaattgattt 7270163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 159; Significance: 2e-84; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 118 - 375
Target Start/End: Original strand, 11698704 - 11698962
Alignment:
Q  118 tttggatgaaggtgcttagaaaagctaatggttgtgtttgagnnnnnnnn-cccggctgttttccaaaagttgttggttgtggtgtaggtttttaagttg 216  Q
    ||||| ||||||||||||| | |||||||||||||||||| |         ||||||||||||||||| |||||||||||||||||||||||||||| ||    
T  11698704 tttgggtgaaggtgcttaggagagctaatggttgtgtttggggttttttttcccggctgttttccaaaggttgttggttgtggtgtaggtttttaagctg 11698803  T
Q  217 gtgttcaggggttgtgtgcgagcaacggaatgtgggtggtagaagttgtttttgtggcagttgtgacgatgcttgaggattttgtttatgttgttttgtt 316  Q
    |||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||    
T  11698804 gtgttcaggggttgtgtgcgagcagcagaatgtgggtggtagaagttgtttttgtggcagttgtgacgatgcttgatgattttgtttatgttgtttcgtt 11698903  T
Q  317 gatcgaagtgttaacattgttttggtgtttctatttattgatttatgagatgacccttt 375  Q
    | |||| |||||  ||||||||||||||||||||||||||||||  |||||| ||||||    
T  11698904 gctcgaggtgttcgcattgttttggtgtttctatttattgatttcggagatggcccttt 11698962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 186 - 360
Target Start/End: Complemental strand, 3302121 - 3301935
Alignment:
Q  186 gttgttggttgtggtgtaggtttttaagttggtgttcaggggttgtgtgcgagcaacggaatgtgggtggtagaagttgtttttgtggcagttgtgacga 285  Q
    |||||||||||| ||||||||||||||||||||||||||||| |||||| ||||| ||||||||||||||| |||||| ||||||||||||||||||| |    
T  3302121 gttgttggttgttgtgtaggtttttaagttggtgttcagggggtgtgtgtgagcagcggaatgtgggtggtggaagttatttttgtggcagttgtgacca 3302022  T
Q  286 tgcttgaggattt------------tgtttatgttgttttgttgatcgaagtgttaacattgttttggtgtttctatttattgattt 360  Q
    || ||||||||||            |||||||||||||| ||||||||  |||||| | ||||||||||||||||||||||||||||    
T  3302021 tgtttgaggattttggtacaacttatgtttatgttgtttcgttgatcgtggtgttagctttgttttggtgtttctatttattgattt 3301935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 184 - 395
Target Start/End: Complemental strand, 29550266 - 29550068
Alignment:
Q  184 aagttgttggttgtggtgtaggtttttaagttggtgttcaggggttgtgtgcgagcaacggaatgtgggtggtagaagttgtttttgtggcagttgtgac 283  Q
    |||||||||||| | | |||||||||||||||| |||||| |||||||||||||||| |||||||||| ||||| ||||||||||||||| |||  ||||    
T  29550266 aagttgttggttattgggtaggtttttaagttgatgttcaagggttgtgtgcgagcagcggaatgtggatggtaaaagttgtttttgtggtagt--tgac 29550169  T
Q  284 gatgcttgaggattttgtttatgttgttttgttgatcgaagtgttaacattgttttggtgtttctatttattgatttatgagatgaccctttatcaagag 383  Q
               | |||||||||||||||| ||||||||  |||||| | || |||||||||||||||||||||||||  |||||  |||||| | | |||    
T  29550168 -----------agtttgtttatgttgtttcgttgatcgtggtgttagctttattttggtgtttctatttattgatttcggagatagccctttgttatgag 29550080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 107 - 301
Target Start/End: Original strand, 39020545 - 39020729
Alignment:
Q  107 atgaggtgtgttttggatgaaggtgcttagaaaagctaatggttgtgtttgagnnnnnnnncccggctgttttccaaaagttgttggttgtggtgtaggt 206  Q
    ||||||||||||| || ||| ||||||| | | |||||||||| ||||||| |        |||| ||||||| |||| |||||||||||| ||||||||    
T  39020545 atgaggtgtgtttagggtgagggtgcttgggagagctaatggtggtgtttggggttgtattcccgactgtttttcaaaggttgttggttgttgtgtaggt 39020644  T
Q  207 ttttaagttggtgttcaggggttgtgtgcgagcaacggaatgtgggtggtagaagttgtttttgtggcagttgtgacgatgcttgaggattttgt 301  Q
    |||||| ||||||||||||||||||||| ||| ||          ||||| |||||||||||||||||||||||||| ||| |||||||||||||    
T  39020645 ttttaatttggtgttcaggggttgtgtgtgagtaa----------gtggtggaagttgtttttgtggcagttgtgacaatgtttgaggattttgt 39020729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 175 - 360
Target Start/End: Complemental strand, 1778284 - 1778086
Alignment:
Q  175 gttttccaaaagttgttggttgtggtgtaggtttttaagttggtgttcaggggttgtgtgcgagcaacggaatgtgggtggtagaagttgtttttgtggc 274  Q
    ||||| |||| |||||||||||| |||||| |||||| |||  ||||| |||||||||| | || |  || |||| |||||| |||||||||||||||||    
T  1778284 gtttttcaaaggttgttggttgttgtgtagatttttacgttattgttcgggggttgtgtaccagtagtggtatgtaggtggtggaagttgtttttgtggc 1778185  T
Q  275 agttgtgacgatgcttgaggat------------tttgtttatgttgttttgttgatcgaagtgttaacattg-ttttggtgtttctatttattgattt 360  Q
    ||||||||| ||| ||||||||            |||||||||||||||| ||||||||  ||| |||| ||| |||||||||||||||||||||||||    
T  1778184 agttgtgacaatgtttgaggattttggtacaacttttgtttatgttgtttcgttgatcgtggtgataactttgtttttggtgtttctatttattgattt 1778086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 229 - 276
Target Start/End: Complemental strand, 47588784 - 47588737
Alignment:
Q  229 tgtgtgcgagcaacggaatgtgggtggtagaagttgtttttgtggcag 276  Q
    |||||||||||| | |||||| |||||| |||||||||||||||||||    
T  47588784 tgtgtgcgagcagcagaatgtaggtggtggaagttgtttttgtggcag 47588737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 174 - 275
Target Start/End: Original strand, 5893195 - 5893297
Alignment:
Q  174 tgttttccaaaagttgttggttgtggtgtaggtttttaa-gttggtgttcaggggttgtgtgcgagcaacggaatgtgggtggtagaagttgtttttgtg 272  Q
    |||||| |||| |||||||||||| |||| |||| || | |||| ||||  |||||||  |||||||| |||||||| || ||| |||||| ||||||||    
T  5893195 tgtttttcaaaggttgttggttgttgtgttggttcttgacgttgttgtttgggggttgaatgcgagcagcggaatgtaggcggtggaagttatttttgtg 5893294  T
Q  273 gca 275  Q
    |||    
T  5893295 gca 5893297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 224 - 276
Target Start/End: Complemental strand, 36933998 - 36933946
Alignment:
Q  224 ggggttgtgtgcgagcaacggaatgtgggtggtagaagttgtttttgtggcag 276  Q
    |||||||||||||||||   |||||| |||||| |||||||||| ||||||||    
T  36933998 ggggttgtgtgcgagcagttgaatgtaggtggtggaagttgtttctgtggcag 36933946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 332 - 360
Target Start/End: Original strand, 39020785 - 39020813
Alignment:
Q  332 attgttttggtgtttctatttattgattt 360  Q
    |||||||||||||||||||||||||||||    
T  39020785 attgttttggtgtttctatttattgattt 39020813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 155; Significance: 4e-82; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 155; E-Value: 4e-82
Query Start/End: Original strand, 109 - 395
Target Start/End: Complemental strand, 53202023 - 53201735
Alignment:
Q  109 gaggtgtgttttggatgaaggtgcttagaaaagctaatggttgtgtttgagnnnnnnnn-cccggctgttttccaaaagttgttggttgtggtgtaggtt 207  Q
    |||||||||||||||||||||||||||| | |||| ||||| ||||||| |         ||||||||||||| ||| ||||||||||||||||||||||    
T  53202023 gaggtgtgttttggatgaaggtgcttaggagagctcatggtggtgtttggggttttttttcccggctgttttc-aaaggttgttggttgtggtgtaggtt 53201925  T
Q  208 tttaagttggtgttcaggggttgtgtgcgagcaacggaatgtgggtg--gtagaagttgtttttgtggcagttgtgacgatgcttgaggattttgtttat 305  Q
    ||||||||| ||||||||||||||||||||||| |||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53201924 tttaagttgatgttcaggggttgtgtgcgagcagcggaatgtgggtgtggtagaagttgtttttgtggcagttgtgacgatgcttgaggattttgtttat 53201825  T
Q  306 gttgttttgttgatcgaagtgttaacattgttttggtgtttctatttattgatttatgagatgaccctttatcaagaggcgtttcctata 395  Q
    ||||||||||||||||   ||||| | ||||||||||||||||||||||||||||  |||||  |||||| | | |||| ||||||||||    
T  53201824 gttgttttgttgatcgtgatgttagctttgttttggtgtttctatttattgatttcggagatagccctttgttaggaggtgtttcctata 53201735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 107 - 395
Target Start/End: Original strand, 34227344 - 34227632
Alignment:
Q  107 atgaggtgtgttttggatgaaggtgcttagaaaagctaatggttgtgtttgagnnnnnnnncccggctgttttccaaaagttgttggttgtggtgtaggt 206  Q
    |||||||||||||||||||||||||||||| | | | |||||| ||||||| |        | |||||||||| | || |||||||| ||| ||||||||    
T  34227344 atgaggtgtgttttggatgaaggtgcttaggagaaccaatggtggtgtttgggttttttttcacggctgtttttctaaggttgttggctgttgtgtaggt 34227443  T
Q  207 ttttaagttggtgttcaggggttgtgtgcgagcaacggaatgtgggtggtagaagttgtttttgtggcagttgtgacgatgcttgaggattttgtttatg 306  Q
    |||||||||||||||||||||||||||||||| | |  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34227444 ttttaagttggtgttcaggggttgtgtgcgagtagcaaaatgtgggtggtagaagttgtttttgtggcagttgtgacgatgcttgaggattttgtttatg 34227543  T
Q  307 ttgttttgttgatcgaagtgttaacattgttttggtgtttctatttattgatttatgagatgaccctttatcaagaggcgtttcctata 395  Q
    |||||| ||||||||  |||||| | ||||||||||||||||||||||||||||  |||||  |||||| | |||||| | ||||||||    
T  34227544 ttgtttcgttgatcgtggtgttagctttgttttggtgtttctatttattgatttcggagatagccctttgttaagaggtgattcctata 34227632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 107 - 360
Target Start/End: Original strand, 47518802 - 47519052
Alignment:
Q  107 atgaggtgtgttttggatgaaggtgcttagaaaagctaatggttgtgtttgagnnnnnnnncccggctgttttccaaaagttgttggttgtggtgtaggt 206  Q
    ||||| |||||||||| ||||||||||||| | |||||||||| |||||||||        |||| ||||||| |||| |||||||||||||||||||||    
T  47518802 atgagatgtgttttgggtgaaggtgcttaggagagctaatggtggtgtttgaggtttttttcccgactgtttttcaaaggttgttggttgtggtgtaggt 47518901  T
Q  207 ttttaagttggtgttcaggggttgtgtgcgagcaacggaatgtgggtggtagaagttgtttttgtggcagttgtgacgatgcttgaggattttgtttatg 306  Q
    ||||||||||| ||||||| |||||||||||||| | |||||||||||||||||||||||||||||||||||||| |||||||||||| |||||| ||      
T  47518902 ttttaagttggcgttcaggagttgtgtgcgagcagcagaatgtgggtggtagaagttgtttttgtggcagttgtggcgatgcttgaggtttttgtata-- 47518999  T
Q  307 ttgttttgttgatcgaagtgttaacattgttttggtgtttctatttattgattt 360  Q
     ||||| |||||||   |||||| | ||||||||||||||| ||||||||||||    
T  47519000 -tgtttcgttgatcctggtgttagctttgttttggtgtttcgatttattgattt 47519052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 109 - 300
Target Start/End: Complemental strand, 6409786 - 6409594
Alignment:
Q  109 gaggtgtgtttt-ggatgaaggtgcttagaaaagctaatggttgtgtttgagnnnnnnnncccggctgttttccaaaagttgttggttgtggtgtaggtt 207  Q
    |||||||||||| |||||||||||||  | | ||||||||||  ||||||||        |||||||||||| |||| ||||||||||||  ||||||||    
T  6409786 gaggtgtgtttttggatgaaggtgctcgggagagctaatggtgttgtttgaggttttcttcccggctgtttttcaaaggttgttggttgttatgtaggtt 6409687  T
Q  208 tttaagttggtgttcaggggttgtgtgcgagcaacggaatgtgggtggtagaagttgtttttgtggcagttgtgacgatgcttgaggattttg 300  Q
    |||| |||| ||||| |||||| ||  |||||| |||||||| |||||| ||||||||||||||||||||||||| |||| ||||||||||||    
T  6409686 tttatgttgttgttcgggggttatgatcgagcagcggaatgtaggtggtggaagttgtttttgtggcagttgtgatgatgtttgaggattttg 6409594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 108 - 278
Target Start/End: Original strand, 23054622 - 23054793
Alignment:
Q  108 tgaggtgtgttttggatgaaggtgcttagaaaagctaatggttgtgtttgagnnnnnnnn-cccggctgttttccaaaagttgttggttgtggtgtaggt 206  Q
    |||||||||||||||||||||||||||   | ||||||| || ||||||| |         |||| || |||| |||| |||||| ||||| ||||||||    
T  23054622 tgaggtgtgttttggatgaaggtgcttgagagagctaattgtggtgtttgggggttttattcccgactctttttcaaaggttgttagttgttgtgtaggt 23054721  T
Q  207 ttttaagttggtgttcaggggttgtgtgcgagcaacggaatgtgggtggtagaagttgtttttgtggcagtt 278  Q
    |||||||||||||||||||| ||||||||||||| ||||||||||||||| |||||||||||||||||||||    
T  23054722 ttttaagttggtgttcagggtttgtgtgcgagcaccggaatgtgggtggtggaagttgtttttgtggcagtt 23054793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 243 - 360
Target Start/End: Original strand, 31360549 - 31360666
Alignment:
Q  243 ggaatgtgggtggtagaagttgtttttgtggcagttgtgacgatgcttgaggattttgtttatgttgttttgttgatcgaagtgttaacattgttttggt 342  Q
    ||||||||||||||||||||||||||||||| | ||||||||||| |||| ||||||||||||||||| | ||||||||   |||||   ||||||| ||    
T  31360549 ggaatgtgggtggtagaagttgtttttgtggtaattgtgacgatgtttgaagattttgtttatgttgtgtcgttgatcgtgatgttagttttgttttagt 31360648  T
Q  343 gtttctatttattgattt 360  Q
    ||||||||||||||||||    
T  31360649 gtttctatttattgattt 31360666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 213 - 395
Target Start/End: Original strand, 14566436 - 14566630
Alignment:
Q  213 gttggtgttcaggggttgtgtgcgagcaacggaatgtgggtggtagaagttgtttttgtggcagttgtgacgatgcttgagga------------ttttg 300  Q
    |||||||||||||||||||||||||||| |||||||| |||||| |||||||||| |||||| |||||||| ||| |||||||            |||||    
T  14566436 gttggtgttcaggggttgtgtgcgagcagcggaatgttggtggtggaagttgtttatgtggctgttgtgactatgtttgaggattttggtacaacttttg 14566535  T
Q  301 tttatgttgttttgttgatcgaagtgttaacattgttttggtgtttctatttattgatttatgagatgaccctttatcaagaggcgtttcctata 395  Q
    |||||||||||| ||||||||  |||||| | ||| | | ||||||||||||| ||||||  |||||  |||||| | | |||||||||||||||    
T  14566536 tttatgttgtttcgttgatcgtggtgttagctttggtcttgtgtttctatttactgatttcggagatagccctttgttaggaggcgtttcctata 14566630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 170 - 274
Target Start/End: Original strand, 24958003 - 24958107
Alignment:
Q  170 cggctgttttccaaaagttgttggttgtggtgtaggtttttaagttggtgttcaggggttgtgtgcgagcaacggaatgtgggtggtagaagttgttttt 269  Q
    |||||||||| |||| |||||||||||| || ||| |||||| |||| ||||||||||||||| |||||||||  ||||| |||||| ||||||||||||    
T  24958003 cggctgtttttcaaaggttgttggttgttgtttagatttttatgttgttgttcaggggttgtgagcgagcaacataatgtaggtggtggaagttgttttt 24958102  T
Q  270 gtggc 274  Q
    |||||    
T  24958103 gtggc 24958107  T

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Target: chr4; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 227 - 276
Target Start/End: Complemental strand, 14791995 - 14791946
Alignment:
Q  227 gttgtgtgcgagcaacggaatgtgggtggtagaagttgtttttgtggcag 276  Q
    |||||||||||||| |||||||| |||||| |||||||||||||||||||    
T  14791995 gttgtgtgcgagcagcggaatgtaggtggtggaagttgtttttgtggcag 14791946  T

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Target: chr4; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 169 - 269
Target Start/End: Complemental strand, 50589390 - 50589289
Alignment:
Q  169 ccggctgttttccaaaagttgttggttgtggtgtaggtttttaa-gttggtgttcaggggttgtgtgcgagcaacggaatgtgggtggtagaagttgttt 267  Q
    |||| |||||| |||| |||||||||||| ||||||||  || | |||| ||||   |||||||||||||||| |||| |||||||||| ||||||||||    
T  50589390 ccggttgtttttcaaaggttgttggttgttgtgtaggtgcttgacgttgctgtttgtgggttgtgtgcgagcagcggattgtgggtggtggaagttgttt 50589291  T
Q  268 tt 269  Q
    ||    
T  50589290 tt 50589289  T

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Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 296 - 354
Target Start/End: Original strand, 23054823 - 23054881
Alignment:
Q  296 ttttgtttatgttgttttgttgatcgaagtgttaacattgttttggtgtttctatttat 354  Q
    ||||||||||||||||| ||||||||  |||||| | ||||||| ||||||||||||||    
T  23054823 ttttgtttatgttgtttcgttgatcgtggtgttagctttgttttagtgtttctatttat 23054881  T

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Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 224 - 307
Target Start/End: Complemental strand, 12888045 - 12887961
Alignment:
Q  224 ggggttgtgtgcgagcaacggaatgtgggtggtagaagttgtttttgtggcag-ttgtgacgatgcttgaggattttgtttatgt 307  Q
    ||||| |||||||||||||||||||| || ||  |||||||||||||||| || |||||||| || |||||  |||| |||||||    
T  12888045 ggggtggtgtgcgagcaacggaatgtagggggaggaagttgtttttgtggtagcttgtgacgttggttgagatttttttttatgt 12887961  T

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Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 169 - 269
Target Start/End: Complemental strand, 23533167 - 23533066
Alignment:
Q  169 ccggctgttttccaaaagttgttggttgtggtgtaggtt-tttaagttggtgttcaggggttgtgtgcgagcaacggaatgtgggtggtagaagttgttt 267  Q
    |||| |||||| ||||||||||||||||| |||| |||| || | |||| ||||  | ||||||||||||||| |  | ||| |||||| ||||||||||    
T  23533167 ccggttgttttacaaaagttgttggttgttgtgttggttcttgacgttgttgtttggtggttgtgtgcgagcagcatattgtaggtggtggaagttgttt 23533068  T
Q  268 tt 269  Q
    ||    
T  23533067 tt 23533066  T

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Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 225 - 269
Target Start/End: Original strand, 28149606 - 28149650
Alignment:
Q  225 gggttgtgtgcgagcaacggaatgtgggtggtagaagttgttttt 269  Q
    |||||||||||||||||| || ||| |||||| ||||||||||||    
T  28149606 gggttgtgtgcgagcaactgattgtaggtggtggaagttgttttt 28149650  T

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Target: chr2 (Bit Score: 151; Significance: 1e-79; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 107 - 389
Target Start/End: Complemental strand, 3921365 - 3921083
Alignment:
Q  107 atgaggtgtgttttggatgaaggtgcttagaaaagctaatggttgtgtttgagnnnnnnnncccggctgttttccaaaagttgttggttgtggtgtaggt 206  Q
    |||||||||||||| | |||||||||| || | |||||||||| ||||||| |        |||||||||||| |||| |||||||||||||||||||||    
T  3921365 atgaggtgtgtttttggtgaaggtgctcaggagagctaatggtggtgtttggggtttttttcccggctgtttttcaaaggttgttggttgtggtgtaggt 3921266  T
Q  207 ttttaagttggtgttcaggggttgtgtgcgagcaacggaatgtgggtggtagaagttgtttttgtggcagttgtgacgatgcttgaggattttgtttatg 306  Q
    |||||||||||| |||| || ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3921265 ttttaagttggttttcaaggattgtgtgcgagcagcggaatgtgggtggtagaagttgtttttgtggcagttgtgacgatgcttgaggattttgtttatg 3921166  T
Q  307 ttgttttgttgatcgaagtgttaacattgttttggtgtttctatttattgatttatgagatgaccctttatcaagaggcgttt 389  Q
    |||||| ||||||||  |||||| |  ||||||| |||||||||||||||||||  |||||  |||||| | | |||||||||    
T  3921165 ttgtttcgttgatcgtggtgttagctatgttttgatgtttctatttattgatttcggagatagccctttgttaggaggcgttt 3921083  T

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Target: chr2; HSP #2
Raw Score: 147; E-Value: 3e-77
Query Start/End: Original strand, 107 - 360
Target Start/End: Complemental strand, 1895175 - 1894922
Alignment:
Q  107 atgaggtgtgttttggatgaaggtgcttagaaaagctaatggttgtgtttgagnnnnnnnncccggctgttttccaaaagttgttggttgtggtgtaggt 206  Q
    ||||||| |||||||||||||||||||||| | |||||||||| |||||| ||        |||||||||||| |||| ||| |||||||||||||||||    
T  1895175 atgaggtttgttttggatgaaggtgcttaggagagctaatggtggtgttt-agggttttttcccggctgtttttcaaaggttattggttgtggtgtaggt 1895077  T
Q  207 ttttaagttggtgttcaggggttgtgtgcgagcaacggaatgtgggtggtagaagttgtttttgtggcagttgtgacgatgcttgagga-ttttgtttat 305  Q
    |||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||    
T  1895076 ttttaagttggtgttcagaggttgtgtgtgagcaacggaatgtgggtggtagaagttgtttttgtggcagttgtgacgatgcttgaggatttttttttat 1894977  T
Q  306 gttgttttgttgatcgaagtgttaacattgttttggtgtttctatttattgattt 360  Q
    ||||||| ||||| ||  |||||| | |||||||| |||||||||||||||||||    
T  1894976 gttgtttcgttgaacgtggtgttagctttgttttgatgtttctatttattgattt 1894922  T

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Target: chr2; HSP #3
Raw Score: 138; E-Value: 6e-72
Query Start/End: Original strand, 107 - 395
Target Start/End: Original strand, 1551937 - 1552226
Alignment:
Q  107 atgaggtgtgttttggatgaaggtgcttagaaaagctaatggttgtgtttgagnnnnnnnnc-ccggctgttttccaaaagttgttggttgtggtgtagg 205  Q
    |||||| ||||||||||||||||||||||| | |||||||||| ||||||| |          ||  ||||||| |||| ||| ||||||||||||||||    
T  1551937 atgaggcgtgttttggatgaaggtgcttaggagagctaatggtggtgtttgggggttttttttccatctgtttttcaaaggttattggttgtggtgtagg 1552036  T
Q  206 tttttaagttggtgttcaggggttgtgtgcgagcaacggaatgtgggtggtagaagttgtttttgtggcagttgtgacgatgcttgaggattttgtttat 305  Q
    |||| ||||||||||||| ||| |||||||||||| | ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1552037 ttttcaagttggtgttcaagggctgtgtgcgagcagcagaatgtgtgtggtagaagttgtttttgtggcagttgtgacgatgcttgaggattttgtttat 1552136  T
Q  306 gttgttttgttgatcgaagtgttaacattgttttggtgtttctatttattgatttatgagatgaccctttatcaagaggcgtttcctata 395  Q
    ||||||||||||||||  |||||| |  |||||||||||||||||||||||||||  |||||  |||||| | | |||||||||| ||||    
T  1552137 gttgttttgttgatcgtggtgttagctatgttttggtgtttctatttattgatttcggagatagccctttgttaggaggcgtttcttata 1552226  T

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Target: chr2; HSP #4
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 215 - 395
Target Start/End: Original strand, 17282398 - 17282577
Alignment:
Q  215 tggtgttcaggggttgtgtgcgagcaacggaatgtgggtggtagaagttgtttttgtggcagttgtgacgatgcttgaggattttgtttatgttgttttg 314  Q
    |||||||||||||||||||| ||||| | || ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  17282398 tggtgttcaggggttgtgtgtgagcagcagattgtgg-tggtagaagttgtttttgtggcagttgtgacgatgcttgaggattttgtttatgttgtttcg 17282496  T
Q  315 ttgatcgaagtgttaacattgttttggtgtttctatttattgatttatgagatgaccctttatcaagaggcgtttcctata 395  Q
    |||||||  ||||||   || |||||||||||||||||||||||||  |||||  |||||| | | |||||||||||||||    
T  17282497 ttgatcgtggtgttagatttattttggtgtttctatttattgatttcggagatagccctttgttaggaggcgtttcctata 17282577  T

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Target: chr2; HSP #5
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 192 - 395
Target Start/End: Complemental strand, 17375000 - 17374786
Alignment:
Q  192 ggttgtggtgtaggtttttaagttggtgttcaggggttgtgtgcgagcaacggaatgtgggtggtagaagttgtttttgtggcagttgtgacgatgcttg 291  Q
    |||||| ||| |||||||||| ||||||||||||||||||||||||||| ||||||||||||||| |||||| |||||||||||||||| |||||| |||    
T  17375000 ggttgttgtggaggtttttaatttggtgttcaggggttgtgtgcgagcagcggaatgtgggtggtggaagttatttttgtggcagttgt-acgatgtttg 17374902  T
Q  292 agga------------ttttgtttatgttgttttgttgatcgaagtgttaacattgttttggtgtttctatttattgatttatgagatgaccctttatca 379  Q
    ||||            ||||||||||||||||| ||||||||  |||||| | |||||||| | |||||||||||||||||  |||||  |||| | | |    
T  17374901 aggattttggtacaacttttgtttatgttgtttcgttgatcgtggtgttagctttgttttgatttttctatttattgatttcggagatagccctctctta 17374802  T
Q  380 agaggcgtttcctata 395  Q
     |||||||||||||||    
T  17374801 ggaggcgtttcctata 17374786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 109 - 395
Target Start/End: Complemental strand, 4869398 - 4869102
Alignment:
Q  109 gaggtgtgttttggatgaaggtgcttagaaaagctaatggttgtgtttgagnnnnnnnncccggctgttttccaaaagttgttggttgtggtgtaggttt 208  Q
    |||||||||||||| |||||||| || | | |||||||||| ||||||| |        ||||  | |||| |||| |||||||||||| |||||| |||    
T  4869398 gaggtgtgttttgggtgaaggtgtttgggagagctaatggtggtgtttggggttttattcccgaatatttttcaaaggttgttggttgttgtgtag-ttt 4869300  T
Q  209 ttaagttggtgttcaggggttgtgtgcgagcaacggaatgtgggtggtagaagttgtttttgtggcagttgtgacgatgcttgaggattt---------- 298  Q
    ||||||||||||||||||||| |||||||||| |||||| ||||||||  |||||||||||||||  |||||||||||| ||||||||||              
T  4869299 ttaagttggtgttcaggggttttgtgcgagcagcggaatatgggtggtgaaagttgtttttgtgg-tgttgtgacgatgtttgaggattttggtaccaca 4869201  T
Q  299 --tgtttatgttgttttgttgatcgaagtgttaacattgttttggtgtttctatttattgatttatgagatgaccctttatcaagaggcgtttcctata 395  Q
      |||||||||||||| ||||||||   ||||| | | ||||||||||||||||| ||||||||  |||||| ||||||   | |||||||||||||||    
T  4869200 tatgtttatgttgtttcgttgatcgccctgttagcttggttttggtgtttctattaattgatttcagagatggccctttgctaggaggcgtttcctata 4869102  T

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Target: chr2; HSP #7
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 176 - 300
Target Start/End: Complemental strand, 34659955 - 34659832
Alignment:
Q  176 ttttccaaaagttgttggttgtggtgtaggtttttaagttggtgttcaggggttgtgtgcgagcaacggaatgtgggtggtagaagttgtttttgtggca 275  Q
    |||| |||| |||||||||||| |||||||||||||||||| |||||| | |||||||||||||| |||||| ||||||||  |||||||||||||||      
T  34659955 tttttcaaatgttgttggttgttgtgtaggtttttaagttgatgttcaagcgttgtgtgcgagcagcggaatatgggtggtgaaagttgtttttgtgg-t 34659857  T
Q  276 gttgtgacgatgcttgaggattttg 300  Q
    |||  ||||||| ||||||||||||    
T  34659856 gttcagacgatgtttgaggattttg 34659832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 107 - 202
Target Start/End: Original strand, 17282308 - 17282403
Alignment:
Q  107 atgaggtgtgttttggatgaaggtgcttagaaaagctaatggttgtgtttgagnnnnnnnncccggctgttttccaaaagttgttggttgtggtgt 202  Q
    |||||||||||||||||||||||||||||  | |||||| ||| |||||||||        || ||||||||| |||| |||||||||||||||||    
T  17282308 atgaggtgtgttttggatgaaggtgcttaagagagctaacggtggtgtttgaggtttttttcctggctgtttttcaaaggttgttggttgtggtgt 17282403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 228 - 276
Target Start/End: Original strand, 3257982 - 3258030
Alignment:
Q  228 ttgtgtgcgagcaacggaatgtgggtggtagaagttgtttttgtggcag 276  Q
    ||||||||||||| |||||||| |||||| |||||||||||||||||||    
T  3257982 ttgtgtgcgagcagcggaatgtaggtggtggaagttgtttttgtggcag 3258030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 143; Significance: 6e-75; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 143; E-Value: 6e-75
Query Start/End: Original strand, 107 - 395
Target Start/End: Complemental strand, 20740374 - 20740078
Alignment:
Q  107 atgaggtgtgttttggatgaaggtgcttagaaaagctaatggttgtgtttgagnnnnnnnncccggctgttttccaaaagttgttggttgtggtgtaggt 206  Q
    ||||| |||||||||| ||||||||||||| | |||||||||| |||||||||        |||||||||||| |||| |||||||||||||||||||||    
T  20740374 atgagatgtgttttgggtgaaggtgcttaggagagctaatggtggtgtttgaggtttttttcccggctgtttttcaaaggttgttggttgtggtgtaggt 20740275  T
Q  207 ttttaagttggtgttcaggggttgtgtgcgagcaacggaatgtgggtggtagaagttgt-ttttgtggcag-------ttgtgacgatgcttgaggattt 298  Q
    ||||||||||||||||| |||||||||||||||| ||||||||||||| |||||||||| |||||||||||       ||||||||||||||||||||||    
T  20740274 ttttaagttggtgttcaagggttgtgtgcgagcagcggaatgtgggtgatagaagttgttttttgtggcagttgtgacttgtgacgatgcttgaggattt 20740175  T
Q  299 tgtttatgttgttttgttgatcgaagtgttaacattgttttggtgtttctatttattgatttatgagatgaccctttatcaagaggcgtttcctata 395  Q
    |||||||||||||||||||||||  |||||| |  | |||||||||||||||||||||||||  |||||  |||||| | | |||||||||| ||||    
T  20740174 tgtttatgttgttttgttgatcgtggtgttagctatattttggtgtttctatttattgatttcggagatagccctttgttaggaggcgtttcttata 20740078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 108 - 300
Target Start/End: Complemental strand, 21881187 - 21880996
Alignment:
Q  108 tgaggtgtgttttggatgaaggtgcttagaaaagctaatggttgtgtttgagnnnnnnnncccggctgttttccaaaagttgttggttgtggtgtaggtt 207  Q
    ||||||||||||||| ||||||||||| | | |||||||||| |||||||||        |||||||||||| |||| |||||||||||| |||||||||    
T  21881187 tgaggtgtgttttgggtgaaggtgcttgggagagctaatggtggtgtttgaggttttattcccggctgtttttcaaaggttgttggttgttgtgtaggtt 21881088  T
Q  208 tttaagttggtgttcaggggttgtgtgcgagcaacggaatgtgggtggtagaagttgtttttgtggcagttgtgacgatgcttgaggattttg 300  Q
     | || ||||||||||||||||||||||||||| ||||||||||||||| |||||| ||||||||||||||||||||||| ||||||||||||    
T  21881087 gt-aatttggtgttcaggggttgtgtgcgagcagcggaatgtgggtggtggaagttatttttgtggcagttgtgacgatgtttgaggattttg 21880996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 173 - 395
Target Start/End: Original strand, 3523971 - 3524206
Alignment:
Q  173 ctgttttccaaaagttgttggttgtggtgtaggtttttaagttggtgttcaggggttgtgtgcgagcaacggaatgtgggtggtagaagttgtttttgtg 272  Q
    |||||||  ||| |||||||||||| ||||| ||| ||| |||| ||||| ||||||||||| ||||| | || ||| |||| |  ||||||||||||||    
T  3523971 ctgttttttaaaggttgttggttgttgtgtaagttattatgttgttgttcgggggttgtgtgtgagcagcagattgtaggtgatgtaagttgtttttgtg 3524070  T
Q  273 gcagttgtgacgatgcttgagga------------ttttgtttatgttgttttgttgatcgaagtgttaacattgtt-ttggtgtttctatttattgatt 359  Q
    |||||||||| |||| |||||||            ||||||||||||||||| |||||||   ||| || | ||||| ||||||||||||||||||||||    
T  3524071 gcagttgtgatgatgtttgaggattttggtacaacttttgtttatgttgtttcgttgatcatggtgatagctttgttgttggtgtttctatttattgatt 3524170  T
Q  360 tatgagatgaccctttatcaagaggcgtttcctata 395  Q
    |  |||||  |||||| | |||||||||||||||||    
T  3524171 ttggagatagccctttgttaagaggcgtttcctata 3524206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 192 - 356
Target Start/End: Original strand, 34213820 - 34213996
Alignment:
Q  192 ggttgtggtgtaggtttttaagttggtgttcaggggttgtgtgcgagcaacggaatgtgggtggtagaagttgtttttgtggcagttgtgacgatgcttg 291  Q
    |||||| |||||||||||||||||| ||||  |||||||||||| |||| |  ||||||||||||  |||||||||||||||||| | ||| |||| |||    
T  34213820 ggttgttgtgtaggtttttaagttgttgtttgggggttgtgtgcaagcagcaaaatgtgggtggtgaaagttgtttttgtggcagctatgaggatgtttg 34213919  T
Q  292 agga------------ttttgtttatgttgttttgttgatcgaagtgttaacattgttttggtgtttctatttattg 356  Q
     |||            ||||||||||||||||||||||||||  |||||||| ||||||||||| | ||||||||||    
T  34213920 gggattttggtacaacttttgtttatgttgttttgttgatcgtggtgttaactttgttttggtgctactatttattg 34213996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 224 - 275
Target Start/End: Complemental strand, 22696306 - 22696255
Alignment:
Q  224 ggggttgtgtgcgagcaacggaatgtgggtggtagaagttgtttttgtggca 275  Q
    |||||||||||||||||||  ||||| |||||| |||||||||||| |||||    
T  22696306 ggggttgtgtgcgagcaacaaaatgtaggtggtggaagttgtttttttggca 22696255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 225 - 278
Target Start/End: Original strand, 34503274 - 34503327
Alignment:
Q  225 gggttgtgtgcgagcaacggaatgtgggtggtagaagttgtttttgtggcagtt 278  Q
    |||| |||| |||||| |||||||| |||||| |||||||||||||||| ||||    
T  34503274 gggtagtgtacgagcatcggaatgtaggtggtggaagttgtttttgtggtagtt 34503327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 140; Significance: 4e-73; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 140; E-Value: 4e-73
Query Start/End: Original strand, 108 - 347
Target Start/End: Complemental strand, 34117816 - 34117577
Alignment:
Q  108 tgaggtgtgttttggatgaaggtgcttagaaaagctaatggttgtgtttgagnnnnnnnncccggctgttttccaaaagttgttggttgtggtgtaggtt 207  Q
    |||||| |||||||||||||||||||| | | |||||| | | ||||||| |        |||||||||||| ||||||||| |||||||||||||||||    
T  34117816 tgaggtatgttttggatgaaggtgcttgggagagctaacgttggtgtttggggttttatccccggctgtttttcaaaagttgatggttgtggtgtaggtt 34117717  T
Q  208 tttaagttggtgttcaggggttgtgtgcgagcaacggaatgtgggtggtagaagttgtttttgtggcagttgtgacgatgcttgaggattttgtttatgt 307  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||  ||||||||||||||||||||||||||    
T  34117716 tttaagttggtgttcaggggttgtgtgcgagcagcggaatgtgggtggtggaagttgtttttgtggcagttgcaacgatgcttgaggattttgtttatgt 34117617  T
Q  308 tgttttgttgatcgaagtgttaacattgttttggtgtttc 347  Q
    ||||| ||||||||  |||||| | |||||||||||||||    
T  34117616 tgtttcgttgatcgtggtgttagctttgttttggtgtttc 34117577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 219 - 360
Target Start/End: Complemental strand, 25791283 - 25791142
Alignment:
Q  219 gttcaggggttgtgtgcgagcaacggaatgtgggtggtagaagttgtttttgtggcagttgtgacgatgcttgaggattttgtttatgttgttttgttga 318  Q
    ||||||||||||||||| |||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||  ||||    
T  25791283 gttcaggggttgtgtgcaagcagcggaatgtgggtggtagaagttgtttttgtgacagttgtgacgatgcttgaggattttgtttatgttgtttcattga 25791184  T
Q  319 tcgaagtgttaacattgttttggtgtttctatttattgattt 360  Q
    |||  |||||| | |||||||| |||||||||||||||||||    
T  25791183 tcgtggtgttagctttgttttgatgtttctatttattgattt 25791142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 168 - 300
Target Start/End: Complemental strand, 34654648 - 34654516
Alignment:
Q  168 cccggctgttttccaaaagttgttggttgtggtgtaggtttttaagttggtgttcaggggttgtgtgcgagcaacggaatgtgggtggtagaagttgttt 267  Q
    ||||||| |||| |||| |||||| ||||| ||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||    
T  34654648 cccggctctttttcaaaggttgttagttgttgtggaggtttttaagttggtgttcaggggttgtgtgcgagcagcggaatgtgggtggtggaagttgttt 34654549  T
Q  268 ttgtggcagttgtgacgatgcttgaggattttg 300  Q
    ||||| |||||| ||||||| ||||||||||||    
T  34654548 ttgtgacagttgcgacgatgtttgaggattttg 34654516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 109 - 360
Target Start/End: Complemental strand, 615511 - 615249
Alignment:
Q  109 gaggtgtgttttggatgaaggtgcttagaaaagctaatggttgtgtttgagnnnnnnnncccggctgttttccaaaagttgttggttgtggtgtaggttt 208  Q
    ||||||||||||||||||||||| || | | |||||| ||| ||||||  |        |||| || |||| ||||||||||||||||| ||||||||||    
T  615511 gaggtgtgttttggatgaaggtgtttgggagagctaagggtggtgtttagggttttattcccgactatttttcaaaagttgttggttgttgtgtaggttt 615412  T
Q  209 ttaagttggtgttcaggggttgtgtgcgagcaacggaatgtgggtggtagaagttgtttttgtggcagttgtgacgatgcttgaggattt---------- 298  Q
    ||||||||||||||||||||||||||||||||||||||| |||| |||  |||||||||||||||  |||||||||| | ||||||||||              
T  615411 ttaagttggtgttcaggggttgtgtgcgagcaacggaatatgggcggtgaaagttgtttttgtgg-tgttgtgacgacgtttgaggattttggtacacca 615313  T
Q  299 --tgtttatgttgttttgttgatcgaagtgttaacattgttttggtgtttctatttattgattt 360  Q
      |||||||||||||||||||||||   ||||| | | ||||||||||||||||| ||||||||    
T  615312 tatgtttatgttgttttgttgatcgtgctgttagcttggttttggtgtttctattaattgattt 615249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 171 - 356
Target Start/End: Original strand, 39709413 - 39709611
Alignment:
Q  171 ggctgttttccaaaag-ttgttggttgtggtgtaggtttttaagttggtgttcaggggttgtgtgcgagcaacggaatgtgggtggtagaagttgttttt 269  Q
    ||||||||| |||||| ||||||||| | ||||| |||||||||||||||||| ||||||||||||||||| | |||||||||||||  |||||||||||    
T  39709413 ggctgtttttcaaaaggttgttggttattgtgtaagtttttaagttggtgttcgggggttgtgtgcgagcagcagaatgtgggtggtgaaagttgttttt 39709512  T
Q  270 gtggcagttgtgacgatgcttgagga------------ttttgtttatgttgttttgttgatcgaagtgttaacattgttttggtgtttctatttattg 356  Q
    |||||||||||| ||||| |||||||            |||||||| |||||||| ||||||||  |||||| | ||||||||||||||||||||||||    
T  39709513 gtggcagttgtggcgatgtttgaggattttggtacaacttttgtttttgttgtttcgttgatcgtggtgttagctttgttttggtgtttctatttattg 39709611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 224 - 307
Target Start/End: Original strand, 32947228 - 32947312
Alignment:
Q  224 ggggttgtgtgcgagcaacggaatgtgggtggtagaagttgtttttgtggcag-ttgtgacgatgcttgaggattttgtttatgt 307  Q
    ||||||||||||||||| ||| |||| | |||| |||||||||||||| |||| |||||||| || |||||| |||| |||||||    
T  32947228 ggggttgtgtgcgagcagcgggatgtagatggtggaagttgtttttgtagcagcttgtgacgttggttgagggttttctttatgt 32947312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 87; Significance: 2e-41; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 168 - 395
Target Start/End: Complemental strand, 10408536 - 10408297
Alignment:
Q  168 cccggctgttttccaaaagttgttggttgtggtgtaggtttttaagttggtgttcaggggttgtgtgcgagcaacggaatgtgggtggtagaagttgttt 267  Q
    |||||||  ||| |||| |||||||||| | |||||||||||||||||||||||||| ||||||||||||||| |||||||| || ||| ||||||||||    
T  10408536 cccggctaattttcaaaggttgttggttattgtgtaggtttttaagttggtgttcagaggttgtgtgcgagcagcggaatgtaggcggtggaagttgttt 10408437  T
Q  268 ttgtggcagttgtgacgatgcttgagga------------ttttgtttatgttgttttgttgatcgaagtgttaacattgttttggtgtttctatttatt 355  Q
    |||||||||||| ||||||| ||||| |            ||||||||||||||||| |||||| |   ||||||| || ||||||||||||||||||||    
T  10408436 ttgtggcagttgcgacgatgtttgagaatttcggtacaacttttgtttatgttgtttagttgattgtgatgttaactttattttggtgtttctatttatt 10408337  T
Q  356 gatttatgagatgaccctttatcaagaggcgtttcctata 395  Q
    |||||  ||||| ||||||| | | |||| ||||||||||    
T  10408336 gatttcggagataaccctttgttaggaggtgtttcctata 10408297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 173 - 395
Target Start/End: Complemental strand, 20861009 - 20860768
Alignment:
Q  173 ctgttttccaaaagttgttggttgtggtgtaggtttttaagttggtgttcaggggttgtgtgcgagcaacggaatgtgggtggtagaagttgtttt---- 268  Q
    ||||||| |||| |||||||||||| || ||||||||||||||||||||||||||||||||| ||||| || ||||||| |||| |||||| ||||        
T  20861009 ctgtttttcaaaggttgttggttgttgtataggtttttaagttggtgttcaggggttgtgtgagagcagcgaaatgtggttggtggaagttttttttttt 20860910  T
Q  269 ---tgtggcagttgtgacgatgcttgagga------------ttttgtttatgttgttttgttgatcgaagtgttaacattgttttggtgtttctattta 353  Q
       |||||||||||||||  || |||||||            ||||||||||||||||| |||||| |  |||||| | |||||||||||||||||||||    
T  20860909 ttgtgtggcagttgtgaccttgtttgaggactttggtacaacttttgtttatgttgtttcgttgattgcggtgttagctttgttttggtgtttctattta 20860810  T
Q  354 ttgatttatgagatgaccctttatcaagaggcgtttcctata 395  Q
    ||| |||  |||||  |||||| | | |||||||||||||||    
T  20860809 ttggtttcggagatagcccttttttaggaggcgtttcctata 20860768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 168 - 300
Target Start/End: Complemental strand, 6443728 - 6443596
Alignment:
Q  168 cccggctgttttccaaaagttgttggttgtggtgtaggtttttaagttggtgttcaggggttgtgtgcgagcaacggaatgtgggtggtagaagttgttt 267  Q
    |||||||||||| |||| ||| ||| |||| ||||||||||||| |||| |||||  |||||||| || ||||||  |||||  ||||| ||||||||||    
T  6443728 cccggctgtttttcaaaggttattgattgttgtgtaggtttttatgttgttgttcgagggttgtgagcaagcaacaaaatgtacgtggtggaagttgttt 6443629  T
Q  268 ttgtggcagttgtgacgatgcttgaggattttg 300  Q
    ||||||||||||||| |||| ||||||||||||    
T  6443628 ttgtggcagttgtgatgatgtttgaggattttg 6443596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 177 - 300
Target Start/End: Complemental strand, 5994312 - 5994189
Alignment:
Q  177 tttccaaaagttgttggttgtggtgtaggtttttaagttggtgttcaggggttgtgtgcgagcaacggaatgtgggtggtagaagttgtttttgtggcag 276  Q
    ||||| || |||||||||||| |||||||||||||  ||| ||| | ||| ||||| ||||||| | |||| | |||||| |||||||||||||||| ||    
T  5994312 tttcccaaggttgttggttgttgtgtaggtttttatattgttgtccggggattgtgcgcgagcagcagaatctaggtggtggaagttgtttttgtggtag 5994213  T
Q  277 ttgtgacgatgcttgaggattttg 300  Q
    ||||||||||| ||||||||||||    
T  5994212 ttgtgacgatgtttgaggattttg 5994189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 77; Significance: 1e-35; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 176 - 300
Target Start/End: Original strand, 18270131 - 18270254
Alignment:
Q  176 ttttccaaaagttgttggttgtggtgtaggtttttaagttggtgttcaggggttgtgtgcgagcaacggaatgtgggtggtagaagttgtttttgtggca 275  Q
    |||| |||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||  ||||| |||||||||      
T  18270131 tttttcaaaggttgttggttgttgtgtaggtttttaagttggtgttcaggggttgtgtgcgagcagcggaatatgggtggtgaaagttatttttgtgg-t 18270229  T
Q  276 gttgtgacgatgcttgaggattttg 300  Q
    |||||||||||| ||||||||||||    
T  18270230 gttgtgacgatgtttgaggattttg 18270254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 108 - 360
Target Start/End: Complemental strand, 43275711 - 43275457
Alignment:
Q  108 tgaggtgtgttttggatgaaggtgcttagaaaagctaatggttgtgtttgagnnnnnnnncccggctgttttccaaaagttgttggttgtggtgtaggtt 207  Q
    ||||||||||||||||||||||||||| | | |||||||||| ||||||  |          |||||||||| |||| |||||||||||| |||||||||    
T  43275711 tgaggtgtgttttggatgaaggtgcttgggagagctaatggtggtgtttagggttttattatcggctgtttttcaaaggttgttggttgttgtgtaggtt 43275612  T
Q  208 tttaagttggtgttcaggggttgtgtgcgagcaacggaatgtgggtggtagaagttgtttttgtggcagttgtgacgatgcttgagga------------ 295  Q
    ||||| ||| ||||||||||||||||||||          ||||||||| |||||||||||||||||| ||||||| ||| |||||||                
T  43275611 tttaatttgatgttcaggggttgtgtgcga----------gtgggtggtggaagttgtttttgtggcacttgtgacaatgtttgaggattttggtacaac 43275522  T
Q  296 ttttgtttatgttgttttgttgatcgaagtgttaacattgttttggtgtttctatttattgattt 360  Q
    ||||||||||||||||| ||||||||  |||||| | |||||||| |||||||||||||||||||    
T  43275521 ttttgtttatgttgtttcgttgatcgtggtgttagctttgttttgatgtttctatttattgattt 43275457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 227 - 396
Target Start/End: Original strand, 893410 - 893591
Alignment:
Q  227 gttgtgtgcgagcaacggaatgtgggtggtagaagttgtttttgtggcagttgtgacgatgcttgaggattttg------------tttatgttgttttg 314  Q
    |||||||||||||| ||||||||||||||| |||||||||||  ||||||||||||||||| || | |||||||            |||||||| |||      
T  893410 gttgtgtgcgagcagcggaatgtgggtggtggaagttgttttgatggcagttgtgacgatgtttaaagattttggtacaacttttatttatgttttttca 893509  T
Q  315 ttgatcgaagtgttaacattgttttggtgtttctatttattgatttatgagatgaccctttatcaagaggcgtttcctataa 396  Q
    |||||||  |||||| | ||||||||||||||||||||||||||||  |||||  |||||| | | ||||||||||||||||    
T  893510 ttgatcgtggtgttagctttgttttggtgtttctatttattgatttcagagatagccctttgttaggaggcgtttcctataa 893591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 169 - 276
Target Start/End: Complemental strand, 25498656 - 25498548
Alignment:
Q  169 ccggctgttttccaaaagttgttggttgtggtgtaggtttttaa-gttggtgttcaggggttgtgtgcgagcaacggaatgtgggtggtagaagttgttt 267  Q
    |||| |||||| |||| ||| |||||||| |||| |||| || | |||| ||||  ||||||||||||||||| | |||||| |||||| ||||||||||    
T  25498656 ccggttgtttttcaaaggttattggttgttgtgttggttcttgacgttgttgtttgggggttgtgtgcgagcagcagaatgtaggtggtggaagttgttt 25498557  T
Q  268 ttgtggcag 276  Q
    |||||||||    
T  25498556 ttgtggcag 25498548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 224 - 299
Target Start/End: Original strand, 17113970 - 17114046
Alignment:
Q  224 ggggttgtgtgcgagcaacggaatgtgggtggtagaagttgtttttgtggcag-ttgtgacgatgcttgaggatttt 299  Q
    ||||||||||||||||| |||||||| ||| || ||||||| ||||||||||| |||||||| || |||||| ||||    
T  17113970 ggggttgtgtgcgagcagcggaatgtaggtagtggaagttgcttttgtggcagcttgtgacgttggttgaggttttt 17114046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 300 - 360
Target Start/End: Original strand, 18270266 - 18270326
Alignment:
Q  300 gtttatgttgttttgttgatcgaagtgttaacattgttttggtgtttctatttattgattt 360  Q
    ||||||||||||| ||||||||   ||||| | | ||||||||||||||||| ||||||||    
T  18270266 gtttatgttgtttcgttgatcgtgctgttagcttggttttggtgtttctattaattgattt 18270326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 223 - 275
Target Start/End: Original strand, 27741608 - 27741659
Alignment:
Q  223 aggggttgtgtgcgagcaacggaatgtgggtggtagaagttgtttttgtggca 275  Q
    |||||||||||||||||||||||||||   |||| || |||||||||||||||    
T  27741608 aggggttgtgtgcgagcaacggaatgt-aatggtggatgttgtttttgtggca 27741659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 62; Significance: 1e-26; HSPs: 2)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 213 - 395
Target Start/End: Complemental strand, 250939 - 250745
Alignment:
Q  213 gttggtgttcaggggttgtgtgcgagcaacggaatgtgggtggtagaagttgtttttgtggcagttgtgacgatgcttgaggat------------tttg 300  Q
    |||||||||||||||||||||||||||| |||||||| |||||| |||||||||| |||||| |||||||| ||| ||||||||            ||||    
T  250939 gttggtgttcaggggttgtgtgcgagcagcggaatgttggtggtggaagttgtttatgtggctgttgtgactatgtttgaggattttggtacaacttttg 250840  T
Q  301 tttatgttgttttgttgatcgaagtgttaacattgttttggtgtttctatttattgatttatgagatgaccctttatcaagaggcgtttcctata 395  Q
    |||||||||||| ||||||||  |||||| | ||| | | ||||||||||||| ||||||  |||||  |||||| | | |||||||||||||||    
T  250839 tttatgttgtttcgttgatcgtggtgttagctttggtcttgtgtttctatttactgatttcggagatagccctttgttaggaggcgtttcctata 250745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 227 - 276
Target Start/End: Original strand, 47736 - 47785
Alignment:
Q  227 gttgtgtgcgagcaacggaatgtgggtggtagaagttgtttttgtggcag 276  Q
    |||||||||||||| |||||||| |||||| |||||||||||||||||||    
T  47736 gttgtgtgcgagcagcggaatgtaggtggtggaagttgtttttgtggcag 47785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 224 - 300
Target Start/End: Complemental strand, 54117 - 54040
Alignment:
Q  224 ggggttgtgtgcgagcaacggaatgtgggtggtagaagttgtttttgtggcag-ttgtgacgatgcttgaggattttg 300  Q
    |||||| |||||||||| || ||||| |||||| |||||||||||| || ||| |||||| |||| |||||| |||||    
T  54117 ggggttatgtgcgagcagcgaaatgtaggtggtggaagttgtttttctgtcagcttgtgatgatgtttgagggttttg 54040  T

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