View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13914_low_9 (Length: 430)

Name: NF13914_low_9
Description: NF13914
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13914_low_9
NF13914_low_9
[»] chr5 (37 HSPs)
chr5 (1-413)||(21067107-21067524)
chr5 (1-83)||(12638510-12638591)
chr5 (1-84)||(4617807-4617890)
chr5 (1-84)||(16496604-16496687)
chr5 (1-84)||(39150967-39151050)
chr5 (40-83)||(9068808-9068851)
chr5 (1-84)||(24443908-24443991)
chr5 (1-84)||(25328345-25328428)
chr5 (1-84)||(39527936-39528019)
chr5 (1-84)||(42448215-42448298)
chr5 (19-84)||(10070746-10070811)
chr5 (31-84)||(19836158-19836211)
chr5 (40-84)||(671139-671183)
chr5 (16-84)||(6041900-6041968)
chr5 (16-84)||(9054027-9054095)
chr5 (16-84)||(32466573-32466641)
chr5 (3-71)||(43070727-43070795)
chr5 (1-84)||(1287319-1287402)
chr5 (1-84)||(6672245-6672328)
chr5 (1-84)||(9902542-9902625)
chr5 (40-83)||(10011475-10011518)
chr5 (1-84)||(10393543-10393626)
chr5 (40-83)||(12769205-12769248)
chr5 (1-84)||(18473918-18474001)
chr5 (1-84)||(28143273-28143356)
chr5 (1-84)||(36569283-36569366)
chr5 (1-83)||(36319543-36319625)
chr5 (17-83)||(39143446-39143512)
chr5 (16-84)||(972650-972719)
chr5 (3-84)||(17869167-17869248)
chr5 (3-83)||(22792153-22792234)
chr5 (3-84)||(23311216-23311297)
chr5 (38-83)||(29069633-29069678)
chr5 (40-84)||(6219270-6219314)
chr5 (40-84)||(12707956-12708000)
chr5 (16-84)||(33617100-33617168)
chr5 (40-84)||(37940922-37940966)
[»] chr3 (30 HSPs)
chr3 (1-84)||(37312532-37312615)
chr3 (1-84)||(40639606-40639689)
chr3 (1-84)||(38127883-38127966)
chr3 (16-84)||(46894817-46894885)
chr3 (1-84)||(11312594-11312677)
chr3 (1-84)||(41464668-41464751)
chr3 (31-84)||(46311514-46311567)
chr3 (40-84)||(23525986-23526030)
chr3 (40-84)||(32590976-32591020)
chr3 (16-84)||(36540109-36540177)
chr3 (40-84)||(47410832-47410876)
chr3 (40-84)||(50238920-50238964)
chr3 (1-84)||(4232218-4232301)
chr3 (1-84)||(8381083-8381166)
chr3 (1-84)||(13525173-13525256)
chr3 (1-84)||(35069317-35069400)
chr3 (45-84)||(44879318-44879357)
chr3 (1-83)||(29212106-29212188)
chr3 (3-84)||(19921355-19921436)
chr3 (19-84)||(40559678-40559743)
chr3 (1-73)||(4039748-4039820)
chr3 (16-84)||(4833165-4833233)
chr3 (40-84)||(12948814-12948858)
chr3 (40-84)||(15003632-15003676)
chr3 (16-84)||(24250729-24250797)
chr3 (40-84)||(34397684-34397728)
chr3 (40-84)||(40193036-40193080)
chr3 (40-84)||(44037524-44037568)
chr3 (40-84)||(45475312-45475356)
chr3 (40-84)||(53583965-53584009)
[»] chr2 (26 HSPs)
chr2 (1-84)||(25510343-25510426)
chr2 (1-84)||(42007256-42007339)
chr2 (1-84)||(43461375-43461458)
chr2 (40-84)||(18779915-18779959)
chr2 (40-83)||(6598405-6598448)
chr2 (1-84)||(11816817-11816900)
chr2 (1-84)||(12236125-12236208)
chr2 (1-84)||(23497553-23497636)
chr2 (1-84)||(35476531-35476614)
chr2 (1-84)||(36754782-36754865)
chr2 (1-84)||(39070023-39070106)
chr2 (1-83)||(7906971-7907053)
chr2 (1-83)||(7975055-7975137)
chr2 (40-84)||(16535023-16535067)
chr2 (40-84)||(35706856-35706900)
chr2 (16-84)||(42211282-42211350)
chr2 (40-83)||(12541416-12541459)
chr2 (1-84)||(13268016-13268099)
chr2 (1-84)||(32023256-32023339)
chr2 (1-84)||(38490441-38490524)
chr2 (3-83)||(32517861-32517942)
chr2 (40-84)||(18368798-18368842)
chr2 (40-84)||(39310370-39310414)
chr2 (40-84)||(40592317-40592361)
chr2 (40-84)||(42030248-42030291)
chr2 (40-84)||(42133522-42133566)
[»] chr8 (31 HSPs)
chr8 (1-89)||(12702339-12702427)
chr8 (1-84)||(41562446-41562529)
chr8 (45-90)||(31665197-31665242)
chr8 (3-80)||(35222281-35222358)
chr8 (1-84)||(25199050-25199133)
chr8 (1-84)||(34711596-34711679)
chr8 (1-84)||(35421659-35421742)
chr8 (1-84)||(36586486-36586569)
chr8 (1-83)||(37708488-37708570)
chr8 (16-84)||(10096616-10096684)
chr8 (16-83)||(403671-403738)
chr8 (16-83)||(1766713-1766780)
chr8 (1-84)||(4312137-4312220)
chr8 (40-83)||(4694767-4694810)
chr8 (1-84)||(4977075-4977158)
chr8 (1-84)||(8569949-8570032)
chr8 (1-84)||(14188094-14188177)
chr8 (1-84)||(26737975-26738058)
chr8 (1-84)||(27544957-27545040)
chr8 (1-84)||(37295130-37295213)
chr8 (16-83)||(37817381-37817448)
chr8 (16-83)||(37953788-37953855)
chr8 (16-84)||(2733620-2733688)
chr8 (40-84)||(3728406-3728450)
chr8 (40-84)||(7772130-7772174)
chr8 (40-84)||(8547210-8547254)
chr8 (40-84)||(9998723-9998767)
chr8 (1-84)||(25063343-25063427)
chr8 (40-84)||(26675561-26675605)
chr8 (45-84)||(29845169-29845209)
chr8 (40-84)||(34540144-34540188)
[»] chr6 (15 HSPs)
chr6 (1-84)||(4128949-4129032)
chr6 (1-84)||(2711308-2711391)
chr6 (1-73)||(9063017-9063089)
chr6 (1-94)||(2958987-2959080)
chr6 (31-89)||(31642757-31642815)
chr6 (40-84)||(7098810-7098854)
chr6 (1-84)||(4083591-4083674)
chr6 (1-84)||(8448183-8448266)
chr6 (1-84)||(8456987-8457070)
chr6 (1-84)||(8939630-8939713)
chr6 (3-84)||(10531390-10531471)
chr6 (40-84)||(2395637-2395681)
chr6 (40-84)||(10181049-10181093)
chr6 (40-84)||(21513076-21513120)
chr6 (16-84)||(29183662-29183730)
[»] chr1 (28 HSPs)
chr1 (1-83)||(38886430-38886512)
chr1 (1-84)||(13948108-13948191)
chr1 (1-83)||(15331103-15331185)
chr1 (16-89)||(16689085-16689158)
chr1 (40-80)||(13048887-13048927)
chr1 (40-80)||(13053884-13053924)
chr1 (39-84)||(8214627-8214672)
chr1 (40-84)||(19279932-19279976)
chr1 (40-84)||(40685533-40685577)
chr1 (40-84)||(43025890-43025934)
chr1 (16-80)||(45007747-45007811)
chr1 (16-84)||(50248033-50248101)
chr1 (1-84)||(10635493-10635576)
chr1 (1-84)||(17068156-17068239)
chr1 (1-84)||(19338219-19338302)
chr1 (1-83)||(23225331-23225414)
chr1 (1-84)||(25820991-25821074)
chr1 (1-84)||(29005094-29005177)
chr1 (40-83)||(43500223-43500266)
chr1 (1-84)||(49948245-49948328)
chr1 (1-83)||(36586256-36586338)
chr1 (46-83)||(39787736-39787773)
chr1 (38-83)||(41651078-41651123)
chr1 (40-84)||(5598305-5598349)
chr1 (40-84)||(11403173-11403217)
chr1 (40-84)||(22561247-22561291)
chr1 (40-84)||(30455208-30455252)
chr1 (16-84)||(43676080-43676148)
[»] chr7 (28 HSPs)
chr7 (3-84)||(6384562-6384642)
chr7 (1-84)||(12014773-12014856)
chr7 (39-83)||(5841558-5841602)
chr7 (1-84)||(1573882-1573965)
chr7 (1-84)||(4106558-4106641)
chr7 (1-84)||(4227338-4227421)
chr7 (1-84)||(45041774-45041857)
chr7 (19-84)||(24382595-24382660)
chr7 (43-84)||(37919973-37920014)
chr7 (3-84)||(40857383-40857464)
chr7 (40-84)||(10422482-10422526)
chr7 (17-80)||(21421983-21422047)
chr7 (3-83)||(25648199-25648279)
chr7 (40-80)||(28649446-28649486)
chr7 (1-84)||(4069157-4069240)
chr7 (17-84)||(4887570-4887637)
chr7 (1-84)||(9379995-9380078)
chr7 (18-84)||(32986107-32986173)
chr7 (19-84)||(31717301-31717366)
chr7 (16-84)||(33228703-33228772)
chr7 (3-84)||(47584714-47584795)
chr7 (40-84)||(3861416-3861460)
chr7 (40-84)||(18944928-18944972)
chr7 (3-83)||(22752877-22752957)
chr7 (40-84)||(32251415-32251459)
chr7 (40-84)||(38397486-38397530)
chr7 (40-84)||(41862791-41862835)
chr7 (16-84)||(48612521-48612589)
[»] scaffold0778 (1 HSPs)
scaffold0778 (1-84)||(822-905)
[»] scaffold0008 (1 HSPs)
scaffold0008 (1-84)||(39354-39437)
[»] chr4 (17 HSPs)
chr4 (1-84)||(49882750-49882833)
chr4 (1-84)||(13632093-13632177)
chr4 (40-80)||(29334503-29334543)
chr4 (1-84)||(12821169-12821252)
chr4 (40-83)||(24407502-24407545)
chr4 (1-84)||(24712092-24712175)
chr4 (16-83)||(28033197-28033264)
chr4 (40-83)||(31435998-31436041)
chr4 (1-84)||(35828278-35828361)
chr4 (1-84)||(47462077-47462160)
chr4 (43-84)||(1083512-1083553)
chr4 (42-83)||(17815224-17815265)
chr4 (19-84)||(28187223-28187288)
chr4 (40-84)||(3084322-3084366)
chr4 (40-84)||(29428059-29428103)
chr4 (45-77)||(41049052-41049084)
chr4 (40-84)||(42116485-42116529)
[»] scaffold0122 (1 HSPs)
scaffold0122 (40-84)||(15676-15720)
[»] scaffold0432 (1 HSPs)
scaffold0432 (1-84)||(9371-9454)
[»] scaffold0402 (1 HSPs)
scaffold0402 (1-84)||(1282-1365)
[»] scaffold0633 (1 HSPs)
scaffold0633 (38-83)||(3873-3918)


Alignment Details
Target: chr5 (Bit Score: 362; Significance: 0; HSPs: 37)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 1 - 413
Target Start/End: Complemental strand, 21067524 - 21067107
Alignment:
Q  1 acaagtggaggggcgggggttcgaacctccgtcaaagcgtccgacctaacaatttcgatattttaccagttgaactaggacttccagacgacactggtta 100  Q
    ||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||   ||| ||||||||     
T  21067524 acaagtggatgagcgggggttcgaacctccgtcaaagcgtccgacctaacaatttcgatattttaccagttgagctaggacttctgaacggcactggttt 21067425  T
Q  101 acattacccaaatatatatacacaatatgaaatgatttcaaataaacggtttaattaagttgttgatacaagtcctctaagtcatatcatacacttttta 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21067424 acattacccaaatatatatacacaatatgaaatgatttcaaataaacggtttaattaagttgttgatacaagtcctctaagtcatatcatacacttttta 21067325  T
Q  201 aataaaagaaagact-----catactaaaaacccattttcctatatcctaatgttacacatttagcaaaactttagccttaaaaagacttcctaaggtag 295  Q
    |||||||||||||||     ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21067324 aataaaagaaagactatcatcatactaaaaacccattttcctatatcctaatgttacacatttagcaaaactttagccttaaaaagacttcctaaggtag 21067225  T
Q  296 tgttatttattggagagatatgatcaaagtggtctatatatcttctcctatatgtttatggaccaaccggcaattgcttgttatgtataggacgccgtct 395  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  21067224 tgttatttattggagagatatgatcaaagtggtctatatatcttctcctatatgtttatggaccaaccggcaattgcttgttgtgtataggacgccgtct 21067125  T
Q  396 tttgacacgattataatc 413  Q
    ||||||||||||||||||    
T  21067124 tttgacacgattataatc 21067107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 12638510 - 12638591
Alignment:
Q  1 acaagtggaggggcgggggttcgaacctccgtcaaagcgtccgacctaacaatttcgatattttaccagttgaactaggactt 83  Q
    |||||||||||| ||||| |||||||| ||||||| ||||||| |||||||||||||||||||||| |||||| |||||||||    
T  12638510 acaagtggagggacgggg-ttcgaacccccgtcaaggcgtccggcctaacaatttcgatattttactagttgagctaggactt 12638591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 4617807 - 4617890
Alignment:
Q  1 acaagtggaggggcgggggttcgaacctccgtcaaagcgtccgacctaacaatttcgatattttaccagttgaactaggacttc 84  Q
    |||||||||||  | |||||||||||| | ||||  || |||| |||||||||||||| |||||||||||||| ||||||||||    
T  4617807 acaagtggaggtaccggggttcgaaccccggtcatggcatccggcctaacaatttcgacattttaccagttgagctaggacttc 4617890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 16496687 - 16496604
Alignment:
Q  1 acaagtggaggggcgggggttcgaacctccgtcaaagcgtccgacctaacaatttcgatattttaccagttgaactaggacttc 84  Q
    |||||||||||  | |||||||||||| | ||||  || |||| |||||||||||||| ||||| |||||||||||||||||||    
T  16496687 acaagtggaggtaccggggttcgaaccccggtcatggcatccggcctaacaatttcgacattttgccagttgaactaggacttc 16496604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 39150967 - 39151050
Alignment:
Q  1 acaagtggaggggcgggggttcgaacctccgtcaaagcgtccgacctaacaatttcgatattttaccagttgaactaggacttc 84  Q
    |||||||||||  | |||||||||||| | ||||  || |||| |||||||||||||| |||||||||||||| ||||||||||    
T  39150967 acaagtggaggtaccggggttcgaaccccggtcatggcatccggcctaacaatttcgacattttaccagttgagctaggacttc 39151050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 40 - 83
Target Start/End: Complemental strand, 9068851 - 9068808
Alignment:
Q  40 tccgacctaacaatttcgatattttaccagttgaactaggactt 83  Q
    ||||||||||||||||||| |||||||||||||| |||||||||    
T  9068851 tccgacctaacaatttcgacattttaccagttgagctaggactt 9068808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 24443908 - 24443991
Alignment:
Q  1 acaagtggaggggcgggggttcgaacctccgtcaaagcgtccgacctaacaatttcgatattttaccagttgaactaggacttc 84  Q
    |||||||||||  | |||||| ||||| | |||| | | |||||||||||||||||| |||||| |||||||| ||||||||||    
T  24443908 acaagtggaggtaccggggtttgaaccccggtcataacatccgacctaacaatttcggtattttgccagttgagctaggacttc 24443991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 25328345 - 25328428
Alignment:
Q  1 acaagtggaggggcgggggttcgaacctccgtcaaagcgtccgacctaacaatttcgatattttaccagttgaactaggacttc 84  Q
    |||||||||||  | |||||||||||||| ||||  || |||| |||||||||||||  ||||| |||||||| ||||||||||    
T  25328345 acaagtggaggtaccggggttcgaacctcggtcatggcatccggcctaacaatttcggcattttgccagttgagctaggacttc 25328428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 39528019 - 39527936
Alignment:
Q  1 acaagtggaggggcgggggttcgaacctccgtcaaagcgtccgacctaacaatttcgatattttaccagttgaactaggacttc 84  Q
    |||||||||||  | |||||||||||| | ||||  || |||  |||||||||||||  |||||||||||||||||||||||||    
T  39528019 acaagtggaggtaccggggttcgaaccccggtcatggcatccagcctaacaatttcggcattttaccagttgaactaggacttc 39527936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 42448298 - 42448215
Alignment:
Q  1 acaagtggaggggcgggggttcgaacctccgtcaaagcgtccgacctaacaatttcgatattttaccagttgaactaggacttc 84  Q
    |||||||||||  | |||||||||||| | ||||  || |||| |||||||||||||| ||||| |||||||| ||||||||||    
T  42448298 acaagtggaggtaccggggttcgaaccccggtcatggcatccggcctaacaatttcgacattttgccagttgagctaggacttc 42448215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 19 - 84
Target Start/End: Original strand, 10070746 - 10070811
Alignment:
Q  19 gttcgaacctccgtcaaagcgtccgacctaacaatttcgatattttaccagttgaactaggacttc 84  Q
    ||||||||||| ||||  || |||||||||||||||||   |||||||||||||| ||||||||||    
T  10070746 gttcgaacctcagtcatggcatccgacctaacaatttcagcattttaccagttgagctaggacttc 10070811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 31 - 84
Target Start/End: Original strand, 19836158 - 19836211
Alignment:
Q  31 gtcaaagcgtccgacctaacaatttcgatattttaccagttgaactaggacttc 84  Q
    |||| ||| ||||||||||||||||||| ||||| |||||||| ||||||||||    
T  19836158 gtcacagcatccgacctaacaatttcgacattttgccagttgagctaggacttc 19836211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 40 - 84
Target Start/End: Original strand, 671139 - 671183
Alignment:
Q  40 tccgacctaacaatttcgatattttaccagttgaactaggacttc 84  Q
    ||||||||||||||||||  ||||| |||||||||||||||||||    
T  671139 tccgacctaacaatttcggcattttgccagttgaactaggacttc 671183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 16 - 84
Target Start/End: Original strand, 6041900 - 6041968
Alignment:
Q  16 ggggttcgaacctccgtcaaagcgtccgacctaacaatttcgatattttaccagttgaactaggacttc 84  Q
    |||||||||| | | |||| ||| |||| ||||| |||||||| |||||||||||||| ||||||||||    
T  6041900 ggggttcgaatcccggtcatagcatccggcctaataatttcgacattttaccagttgagctaggacttc 6041968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 16 - 84
Target Start/End: Original strand, 9054027 - 9054095
Alignment:
Q  16 ggggttcgaacctccgtcaaagcgtccgacctaacaatttcgatattttaccagttgaactaggacttc 84  Q
    |||||||||||| | ||||  || |||| ||||||||||||| |||||| |||||||| ||||||||||    
T  9054027 ggggttcgaaccccggtcatggcatccggcctaacaatttcggtattttgccagttgagctaggacttc 9054095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 16 - 84
Target Start/End: Complemental strand, 32466641 - 32466573
Alignment:
Q  16 ggggttcgaacctccgtcaaagcgtccgacctaacaatttcgatattttaccagttgaactaggacttc 84  Q
    |||||||||||  | |||| ||| |||| ||||| |||||||| |||||| ||||||||||||||||||    
T  32466641 ggggttcgaactccggtcatagcatccggcctaataatttcgacattttatcagttgaactaggacttc 32466573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 3 - 71
Target Start/End: Original strand, 43070727 - 43070795
Alignment:
Q  3 aagtggaggggcgggggttcgaacctccgtcaaagcgtccgacctaacaatttcgatattttaccagtt 71  Q
    |||||||||  | |||||||||||||||||||  || ||||||||||||||||||  ||||| ||||||    
T  43070727 aagtggaggaaccggggttcgaacctccgtcatggcatccgacctaacaatttcggcattttgccagtt 43070795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 1287402 - 1287319
Alignment:
Q  1 acaagtggaggggcgggggttcgaacctccgtcaaagcgtccgacctaacaatttcgatattttaccagttgaactaggacttc 84  Q
    |||||||||||  | |||||||||||| | ||||   | ||||||||||||||||||  ||||||||| |||| ||||||||||    
T  1287402 acaagtggaggtaccggggttcgaaccccggtcatgacatccgacctaacaatttcggcattttaccaattgagctaggacttc 1287319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 6672328 - 6672245
Alignment:
Q  1 acaagtggaggggcgggggttcgaacctccgtcaaagcgtccgacctaacaatttcgatattttaccagttgaactaggacttc 84  Q
    |||||||||||  | |||||||||||| | ||||  || |||| |||||||||||||  ||||| |||||||| ||||||||||    
T  6672328 acaagtggaggtaccggggttcgaaccccggtcatggcatccggcctaacaatttcggcattttgccagttgagctaggacttc 6672245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 9902542 - 9902625
Alignment:
Q  1 acaagtggaggggcgggggttcgaacctccgtcaaagcgtccgacctaacaatttcgatattttaccagttgaactaggacttc 84  Q
    |||||||||||  | |||||||||||| |  ||| ||| |||| |||||||||||||  ||||| |||||||| ||||||||||    
T  9902542 acaagtggaggtaccggggttcgaaccccgatcatagcatccggcctaacaatttcggcattttgccagttgagctaggacttc 9902625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 40 - 83
Target Start/End: Complemental strand, 10011518 - 10011475
Alignment:
Q  40 tccgacctaacaatttcgatattttaccagttgaactaggactt 83  Q
    ||||||||||||||||||| |||||||| ||||| |||||||||    
T  10011518 tccgacctaacaatttcgacattttaccggttgagctaggactt 10011475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 10393543 - 10393626
Alignment:
Q  1 acaagtggaggggcgggggttcgaacctccgtcaaagcgtccgacctaacaatttcgatattttaccagttgaactaggacttc 84  Q
    |||||||||||  | |||||||||||| | ||||| || |||| ||||| |||||||  ||||| |||||||| ||||||||||    
T  10393543 acaagtggaggtaccggggttcgaaccccggtcaaggcatccggcctaataatttcggcatttttccagttgagctaggacttc 10393626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 40 - 83
Target Start/End: Original strand, 12769205 - 12769248
Alignment:
Q  40 tccgacctaacaatttcgatattttaccagttgaactaggactt 83  Q
    ||||||||||||||||||  |||||||||||||| |||||||||    
T  12769205 tccgacctaacaatttcggcattttaccagttgagctaggactt 12769248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 18474001 - 18473918
Alignment:
Q  1 acaagtggaggggcgggggttcgaacctccgtcaaagcgtccgacctaacaatttcgatattttaccagttgaactaggacttc 84  Q
    |||||||||||  | |||||||||||| | ||||  || |||| |||||||||||||  ||||| |||||||| ||||||||||    
T  18474001 acaagtggaggtaccggggttcgaaccccggtcatggcatccggcctaacaatttcggcattttgccagttgagctaggacttc 18473918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 28143273 - 28143356
Alignment:
Q  1 acaagtggaggggcgggggttcgaacctccgtcaaagcgtccgacctaacaatttcgatattttaccagttgaactaggacttc 84  Q
    |||||||||||  | |||||||||||| | ||||  || |||| |||||||||||||  ||||| |||||||| ||||||||||    
T  28143273 acaagtggaggtaccggggttcgaaccccagtcatggcatccggcctaacaatttcggcattttgccagttgagctaggacttc 28143356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 36569366 - 36569283
Alignment:
Q  1 acaagtggaggggcgggggttcgaacctccgtcaaagcgtccgacctaacaatttcgatattttaccagttgaactaggacttc 84  Q
    |||||||||||  | |||||||||||| | ||||  || |||| |||||||||||||  ||||| |||||||| ||||||||||    
T  36569366 acaagtggaggtaccggggttcgaaccccggtcatggcatccggcctaacaatttcggcattttgccagttgagctaggacttc 36569283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 36319543 - 36319625
Alignment:
Q  1 acaagtggaggggcgggggttcgaacctccgtcaaagcgtccgacctaacaatttcgatattttaccagttgaactaggactt 83  Q
    |||||||||||  | |||||||||||| | ||||  || |||| ||||||||||||  |||||| |||||||| |||||||||    
T  36319543 acaagtggaggtaccggggttcgaacccctgtcatggcatccggcctaacaatttcagtattttgccagttgagctaggactt 36319625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 17 - 83
Target Start/End: Complemental strand, 39143512 - 39143446
Alignment:
Q  17 gggttcgaacctccgtcaaagcgtccgacctaacaatttcgatattttaccagttgaactaggactt 83  Q
    ||||||||||||| ||||  || | || |||||||||||||| ||||| |||||||| |||||||||    
T  39143512 gggttcgaacctcggtcatggcattcggcctaacaatttcgacattttgccagttgagctaggactt 39143446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 16 - 84
Target Start/End: Original strand, 972650 - 972719
Alignment:
Q  16 ggggttcgaacctccgtcaaagcgtccgacctaacaatttcgata-ttttaccagttgaactaggacttc 84  Q
    ||||||||||||   |||| ||| ||||||||||||||||||| | ||||  ||||||||||||||||||    
T  972650 ggggttcgaaccctggtcatagcatccgacctaacaatttcgacatttttgtcagttgaactaggacttc 972719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 3 - 84
Target Start/End: Original strand, 17869167 - 17869248
Alignment:
Q  3 aagtggaggggcgggggttcgaacctccgtcaaagcgtccgacctaacaatttcgatattttaccagttgaactaggacttc 84  Q
    |||||||||  | |||||||||||| | ||||  || |||| |||||||||||||  ||||| |||||||| ||||||||||    
T  17869167 aagtggaggtaccggggttcgaaccccggtcatggcatccggcctaacaatttcggcattttgccagttgagctaggacttc 17869248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 3 - 83
Target Start/End: Original strand, 22792153 - 22792234
Alignment:
Q  3 aagtggaggggcgggggttcgaacctccgtcaaagcgtccgacctaacaatttcgata-ttttaccagttgaactaggactt 83  Q
    ||||||||| |  |||||||||||| | |||||  ||||||||||||||||||||  | |||| |||||||| |||||||||    
T  22792153 aagtggaggtgtcggggttcgaacccctgtcaagacgtccgacctaacaatttcggcatttttgccagttgagctaggactt 22792234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 3 - 84
Target Start/End: Original strand, 23311216 - 23311297
Alignment:
Q  3 aagtggaggggcgggggttcgaacctccgtcaaagcgtccgacctaacaatttcgatattttaccagttgaactaggacttc 84  Q
    |||||||||  | |||||||||||| | ||||  || |||| |||||||||||||  ||||| |||||||| ||||||||||    
T  23311216 aagtggaggtaccggggttcgaaccccggtcatggcatccggcctaacaatttcggcattttgccagttgagctaggacttc 23311297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 38 - 83
Target Start/End: Complemental strand, 29069678 - 29069633
Alignment:
Q  38 cgtccgacctaacaatttcgatattttaccagttgaactaggactt 83  Q
    ||||| |||||||||||||| |||||| |||||||| |||||||||    
T  29069678 cgtccaacctaacaatttcggtattttgccagttgagctaggactt 29069633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #34
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 40 - 84
Target Start/End: Original strand, 6219270 - 6219314
Alignment:
Q  40 tccgacctaacaatttcgatattttaccagttgaactaggacttc 84  Q
    ||||||||||||||||||   ||||||||||| ||||||||||||    
T  6219270 tccgacctaacaatttcggcgttttaccagttaaactaggacttc 6219314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #35
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 40 - 84
Target Start/End: Original strand, 12707956 - 12708000
Alignment:
Q  40 tccgacctaacaatttcgatattttaccagttgaactaggacttc 84  Q
    ||||||||||||||||||  ||||| |||||||| ||||||||||    
T  12707956 tccgacctaacaatttcggcattttgccagttgagctaggacttc 12708000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #36
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 16 - 84
Target Start/End: Complemental strand, 33617168 - 33617100
Alignment:
Q  16 ggggttcgaacctccgtcaaagcgtccgacctaacaatttcgatattttaccagttgaactaggacttc 84  Q
    |||||||||||| |  ||| ||| |||| ||||||||| |||  |||||||||||||| ||||||||||    
T  33617168 ggggttcgaaccccaatcatagcatccggcctaacaatgtcggcattttaccagttgagctaggacttc 33617100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #37
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 40 - 84
Target Start/End: Complemental strand, 37940966 - 37940922
Alignment:
Q  40 tccgacctaacaatttcgatattttaccagttgaactaggacttc 84  Q
    |||| |||||||||||||| ||||| |||||||| ||||||||||    
T  37940966 tccggcctaacaatttcgacattttgccagttgagctaggacttc 37940922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 64; Significance: 8e-28; HSPs: 30)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 37312615 - 37312532
Alignment:
Q  1 acaagtggaggggcgggggttcgaacctccgtcaaagcgtccgacctaacaatttcgatattttaccagttgaactaggacttc 84  Q
    ||||||||||||||||||||||||||| ||||||| ||||||| ||||||||||||| ||||||||||||||| ||||||||||    
T  37312615 acaagtggaggggcgggggttcgaacccccgtcaaggcgtccggcctaacaatttcggtattttaccagttgagctaggacttc 37312532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 40639689 - 40639606
Alignment:
Q  1 acaagtggaggggcgggggttcgaacctccgtcaaagcgtccgacctaacaatttcgatattttaccagttgaactaggacttc 84  Q
    ||||||||||||||||||||||||||| ||||||| ||||||| ||||||||||||| ||||||||||||||| |||| |||||    
T  40639689 acaagtggaggggcgggggttcgaacccccgtcaaggcgtccggcctaacaatttcggtattttaccagttgagctagaacttc 40639606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 38127883 - 38127966
Alignment:
Q  1 acaagtggaggggcgggggttcgaacctccgtcaaagcgtccgacctaacaatttcgatattttaccagttgaactaggacttc 84  Q
    |||||||||||  | |||||||||||| | |||| ||| |||| |||||||||||||| ||||| |||||||| ||||||||||    
T  38127883 acaagtggaggaaccggggttcgaaccccggtcatagcatccggcctaacaatttcgacattttgccagttgagctaggacttc 38127966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 16 - 84
Target Start/End: Complemental strand, 46894885 - 46894817
Alignment:
Q  16 ggggttcgaacctccgtcaaagcgtccgacctaacaatttcgatattttaccagttgaactaggacttc 84  Q
    |||||||||||||| ||||  || |||| ||||||||||||||||||||  ||||||| ||||||||||    
T  46894885 ggggttcgaacctcggtcatggcatccggcctaacaatttcgatattttgtcagttgagctaggacttc 46894817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 11312677 - 11312594
Alignment:
Q  1 acaagtggaggggcgggggttcgaacctccgtcaaagcgtccgacctaacaatttcgatattttaccagttgaactaggacttc 84  Q
    |||||||||||  | |||||||||||| | |||| ||| |||| |||||||||||||  ||||| |||||||| ||||||||||    
T  11312677 acaagtggaggtaccggggttcgaaccccggtcatagcatccggcctaacaatttcggcattttgccagttgagctaggacttc 11312594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 41464751 - 41464668
Alignment:
Q  1 acaagtggaggggcgggggttcgaacctccgtcaaagcgtccgacctaacaatttcgatattttaccagttgaactaggacttc 84  Q
    |||||||||||  | |||||||||||| | ||||  || ||||||||||||||||||  ||||| |||||||| ||||||||||    
T  41464751 acaagtggaggtactggggttcgaaccccggtcatggcatccgacctaacaatttcggcattttgccagttgagctaggacttc 41464668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 31 - 84
Target Start/End: Original strand, 46311514 - 46311567
Alignment:
Q  31 gtcaaagcgtccgacctaacaatttcgatattttaccagttgaactaggacttc 84  Q
    |||| ||| |||| |||||||||||||| |||||||||||||| ||||||||||    
T  46311514 gtcatagcatccggcctaacaatttcgacattttaccagttgagctaggacttc 46311567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 40 - 84
Target Start/End: Original strand, 23525986 - 23526030
Alignment:
Q  40 tccgacctaacaatttcgatattttaccagttgaactaggacttc 84  Q
    |||||||||||||||| || ||||||||| |||||||||||||||    
T  23525986 tccgacctaacaattttgacattttaccaattgaactaggacttc 23526030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 40 - 84
Target Start/End: Complemental strand, 32591020 - 32590976
Alignment:
Q  40 tccgacctaacaatttcgatattttaccagttgaactaggacttc 84  Q
    |||| |||||||||||||| |||||||||||||| ||||||||||    
T  32591020 tccggcctaacaatttcgacattttaccagttgagctaggacttc 32590976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 16 - 84
Target Start/End: Complemental strand, 36540177 - 36540109
Alignment:
Q  16 ggggttcgaacctccgtcaaagcgtccgacctaacaatttcgatattttaccagttgaactaggacttc 84  Q
    |||||||||||||| ||||   | || | |||||||||||||| ||||||||| |||||||||||||||    
T  36540177 ggggttcgaacctcagtcatgacatctggcctaacaatttcgacattttaccacttgaactaggacttc 36540109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 40 - 84
Target Start/End: Original strand, 47410832 - 47410876
Alignment:
Q  40 tccgacctaacaatttcgatattttaccagttgaactaggacttc 84  Q
    ||||||||||||||||||| ||||| |||||||| ||||||||||    
T  47410832 tccgacctaacaatttcgacattttgccagttgagctaggacttc 47410876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 40 - 84
Target Start/End: Original strand, 50238920 - 50238964
Alignment:
Q  40 tccgacctaacaatttcgatattttaccagttgaactaggacttc 84  Q
    |||| |||||||||||||| |||||||||||||| ||||||||||    
T  50238920 tccggcctaacaatttcgacattttaccagttgagctaggacttc 50238964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 4232218 - 4232301
Alignment:
Q  1 acaagtggaggggcgggggttcgaacctccgtcaaagcgtccgacctaacaatttcgatattttaccagttgaactaggacttc 84  Q
    |||||||||||  | |||||||||||| | ||||  || |||| |||||||||||||  ||||| |||||||| ||||||||||    
T  4232218 acaagtggaggtaccggggttcgaaccccggtcatggcatccggcctaacaatttcggcattttgccagttgagctaggacttc 4232301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 8381166 - 8381083
Alignment:
Q  1 acaagtggaggggcgggggttcgaacctccgtcaaagcgtccgacctaacaatttcgatattttaccagttgaactaggacttc 84  Q
    |||||||||||  | |||||||||||| | ||||  || |||| |||||||||||||  ||||| |||||||| ||||||||||    
T  8381166 acaagtggaggtaccggggttcgaaccccggtcatggcatccggcctaacaatttcggcattttgccagttgagctaggacttc 8381083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 13525256 - 13525173
Alignment:
Q  1 acaagtggaggggcgggggttcgaacctccgtcaaagcgtccgacctaacaatttcgatattttaccagttgaactaggacttc 84  Q
    |||||||||||  | |||||||||||| | ||||  || |||| |||||||||||||  ||||| |||||||| ||||||||||    
T  13525256 acaagtggaggtaccggggttcgaaccccggtcatggcatccggcctaacaatttcggcattttgccagttgagctaggacttc 13525173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 35069400 - 35069317
Alignment:
Q  1 acaagtggaggggcgggggttcgaacctccgtcaaagcgtccgacctaacaatttcgatattttaccagttgaactaggacttc 84  Q
    |||||||||||  | |||||||||||| | ||||  || |||| |||||||||||||  ||||| |||||||||||| ||||||    
T  35069400 acaagtggaggtaccggggttcgaaccccggtcatggcatccggcctaacaatttcggcattttgccagttgaactaagacttc 35069317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 45 - 84
Target Start/End: Original strand, 44879318 - 44879357
Alignment:
Q  45 cctaacaatttcgatattttaccagttgaactaggacttc 84  Q
    |||||||||||||| ||||| |||||||||||||||||||    
T  44879318 cctaacaatttcgacattttgccagttgaactaggacttc 44879357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 29212106 - 29212188
Alignment:
Q  1 acaagtggaggggcgggggttcgaacctccgtcaaagcgtccgacctaacaatttcgatattttaccagttgaactaggactt 83  Q
    |||||||||||  | |||||||||||| | ||||  || |||| |||||||||||||  ||||| |||||||| |||||||||    
T  29212106 acaagtggaggtaccggggttcgaaccccggtcatggcatccggcctaacaatttcggcattttgccagttgagctaggactt 29212188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 3 - 84
Target Start/End: Original strand, 19921355 - 19921436
Alignment:
Q  3 aagtggaggggcgggggttcgaacctccgtcaaagcgtccgacctaacaatttcgatattttaccagttgaactaggacttc 84  Q
    |||||||||  | |||||||||||||| ||||  || |||||||||||||||||   ||||| ||| |||| ||||||||||    
T  19921355 aagtggaggaactggggttcgaacctcagtcatggcatccgacctaacaatttcagcattttgccaattgagctaggacttc 19921436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 19 - 84
Target Start/End: Complemental strand, 40559743 - 40559678
Alignment:
Q  19 gttcgaacctccgtcaaagcgtccgacctaacaatttcgatattttaccagttgaactaggacttc 84  Q
    ||||||||| |  |||| || ||||||||||||||||||  |||||| ||||||| ||||||||||    
T  40559743 gttcgaaccccgatcaaggcatccgacctaacaatttcggcattttatcagttgagctaggacttc 40559678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 4039748 - 4039820
Alignment:
Q  1 acaagtggaggggcgggggttcgaacctccgtcaaagcgtccgacctaacaatttcgatattttaccagttga 73  Q
    |||||| |||| || ||||||||||||   ||||  ||||||||||||| |||||||| ||||||| ||||||    
T  4039748 acaagtagaggcgccggggttcgaaccctagtcatggcgtccgacctaataatttcgacattttactagttga 4039820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 16 - 84
Target Start/End: Original strand, 4833165 - 4833233
Alignment:
Q  16 ggggttcgaacctccgtcaaagcgtccgacctaacaatttcgatattttaccagttgaactaggacttc 84  Q
    |||||||||||| | ||||  || |||| |||||||||||||  ||||| |||||||| ||||||||||    
T  4833165 ggggttcgaaccccggtcatggcatccggcctaacaatttcggcattttgccagttgagctaggacttc 4833233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 40 - 84
Target Start/End: Complemental strand, 12948858 - 12948814
Alignment:
Q  40 tccgacctaacaatttcgatattttaccagttgaactaggacttc 84  Q
    |||| |||||||||||||  |||||||||||||| ||||||||||    
T  12948858 tccggcctaacaatttcgtcattttaccagttgagctaggacttc 12948814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 40 - 84
Target Start/End: Complemental strand, 15003676 - 15003632
Alignment:
Q  40 tccgacctaacaatttcgatattttaccagttgaactaggacttc 84  Q
    |||||||||||||||| |  ||||| |||||||||||||||||||    
T  15003676 tccgacctaacaattttggcattttgccagttgaactaggacttc 15003632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 16 - 84
Target Start/End: Complemental strand, 24250797 - 24250729
Alignment:
Q  16 ggggttcgaacctccgtcaaagcgtccgacctaacaatttcgatattttaccagttgaactaggacttc 84  Q
    |||||||||||| | |||| ||| |||| |||||||||||||  ||||| ||| |||| ||||||||||    
T  24250797 ggggttcgaaccccggtcatagcatccggcctaacaatttcggcattttgccaattgagctaggacttc 24250729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 40 - 84
Target Start/End: Complemental strand, 34397728 - 34397684
Alignment:
Q  40 tccgacctaacaatttcgatattttaccagttgaactaggacttc 84  Q
    |||| |||||||||||||  ||||| |||||||||||||||||||    
T  34397728 tccggcctaacaatttcggcattttgccagttgaactaggacttc 34397684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 40 - 84
Target Start/End: Original strand, 40193036 - 40193080
Alignment:
Q  40 tccgacctaacaatttcgatattttaccagttgaactaggacttc 84  Q
    |||| |||||||||||||| |||||||||||| | ||||||||||    
T  40193036 tccggcctaacaatttcgacattttaccagttaagctaggacttc 40193080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 40 - 84
Target Start/End: Original strand, 44037524 - 44037568
Alignment:
Q  40 tccgacctaacaatttcgatattttaccagttgaactaggacttc 84  Q
    ||||||||||||||||||  ||||| |||||||| ||||||||||    
T  44037524 tccgacctaacaatttcggcattttgccagttgagctaggacttc 44037568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 40 - 84
Target Start/End: Original strand, 45475312 - 45475356
Alignment:
Q  40 tccgacctaacaatttcgatattttaccagttgaactaggacttc 84  Q
    |||| ||||||||||||| ||||||||||||||| ||||| ||||    
T  45475312 tccggcctaacaatttcggtattttaccagttgagctaggtcttc 45475356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 40 - 84
Target Start/End: Complemental strand, 53584009 - 53583965
Alignment:
Q  40 tccgacctaacaatttcgatattttaccagttgaactaggacttc 84  Q
    |||| |||||||||||||| ||||| |||||||| ||||||||||    
T  53584009 tccggcctaacaatttcgacattttgccagttgagctaggacttc 53583965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 64; Significance: 8e-28; HSPs: 26)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 25510343 - 25510426
Alignment:
Q  1 acaagtggaggggcgggggttcgaacctccgtcaaagcgtccgacctaacaatttcgatattttaccagttgaactaggacttc 84  Q
    |||||||||||||||||||||||||||||||| || ||||||| ||||||||||||| ||||||||||||||| ||||||||||    
T  25510343 acaagtggaggggcgggggttcgaacctccgtgaaggcgtccggcctaacaatttcggtattttaccagttgagctaggacttc 25510426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 42007256 - 42007339
Alignment:
Q  1 acaagtggaggggcgggggttcgaacctccgtcaaagcgtccgacctaacaatttcgatattttaccagttgaactaggacttc 84  Q
    |||||||||||  | |||||||||||| | ||||  || |||| |||||||||||||| |||||||||||||| ||||||||||    
T  42007256 acaagtggaggtaccggggttcgaaccccggtcatggcatccggcctaacaatttcgacattttaccagttgagctaggacttc 42007339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 43461375 - 43461458
Alignment:
Q  1 acaagtggaggggcgggggttcgaacctccgtcaaagcgtccgacctaacaatttcgatattttaccagttgaactaggacttc 84  Q
    |||||||||||  | |||||||||||| | ||||  || |||| |||||||||||||| |||||||||||||| ||||||||||    
T  43461375 acaagtggaggtaccggggttcgaaccccggtcatggcatccggcctaacaatttcgacattttaccagttgagctaggacttc 43461458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 40 - 84
Target Start/End: Complemental strand, 18779959 - 18779915
Alignment:
Q  40 tccgacctaacaatttcgatattttaccagttgaactaggacttc 84  Q
    ||||||||||||||||||| ||||||||| |||||||||||||||    
T  18779959 tccgacctaacaatttcgacattttaccaattgaactaggacttc 18779915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 40 - 83
Target Start/End: Complemental strand, 6598448 - 6598405
Alignment:
Q  40 tccgacctaacaatttcgatattttaccagttgaactaggactt 83  Q
    |||| |||||||||||||||||||||||||||||||||| ||||    
T  6598448 tccggcctaacaatttcgatattttaccagttgaactagtactt 6598405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 11816817 - 11816900
Alignment:
Q  1 acaagtggaggggcgggggttcgaacctccgtcaaagcgtccgacctaacaatttcgatattttaccagttgaactaggacttc 84  Q
    |||||||||||  | ||||||||||||||  | | ||| |||| |||||||||||||| ||||||||| |||| ||||||||||    
T  11816817 acaagtggaggtaccggggttcgaacctcaataatagcatccggcctaacaatttcgacattttaccaattgagctaggacttc 11816900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 12236208 - 12236125
Alignment:
Q  1 acaagtggaggggcgggggttcgaacctccgtcaaagcgtccgacctaacaatttcgatattttaccagttgaactaggacttc 84  Q
    |||||||||||  | |||||||||||| | ||||  || |||| |||||||||||||  |||||||||||||| ||||||||||    
T  12236208 acaagtggaggtaccggggttcgaaccccggtcatggcatccggcctaacaatttcggcattttaccagttgagctaggacttc 12236125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 23497553 - 23497636
Alignment:
Q  1 acaagtggaggggcgggggttcgaacctccgtcaaagcgtccgacctaacaatttcgatattttaccagttgaactaggacttc 84  Q
    |||||||||||  | |||||||||||| | ||||   | |||| |||||||||||||  |||||||||||||||||||||||||    
T  23497553 acaagtggaggtaccggggttcgaaccccggtcacgacatccggcctaacaatttcggcattttaccagttgaactaggacttc 23497636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 35476531 - 35476614
Alignment:
Q  1 acaagtggaggggcgggggttcgaacctccgtcaaagcgtccgacctaacaatttcgatattttaccagttgaactaggacttc 84  Q
    |||||||||||  | |||||||||||| | ||||  || |||| |||||||||||||| ||||| |||||||| ||||||||||    
T  35476531 acaagtggaggtaccggggttcgaaccccggtcatggcatccggcctaacaatttcgacattttgccagttgagctaggacttc 35476614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 36754782 - 36754865
Alignment:
Q  1 acaagtggaggggcgggggttcgaacctccgtcaaagcgtccgacctaacaatttcgatattttaccagttgaactaggacttc 84  Q
    |||||||||||  | |||||||||||| | |||| ||| |||| |||||||||||||  ||||| |||||||| ||||||||||    
T  36754782 acaagtggaggtaccggggttcgaaccccggtcatagcatccggcctaacaatttcggcattttgccagttgagctaggacttc 36754865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 39070106 - 39070023
Alignment:
Q  1 acaagtggaggggcgggggttcgaacctccgtcaaagcgtccgacctaacaatttcgatattttaccagttgaactaggacttc 84  Q
    |||||||||||  | |||||||||||| | ||||  || |||| |||||||||||||  |||||||||||||| ||||||||||    
T  39070106 acaagtggaggtaccggggttcgaaccccggtcatggcatccggcctaacaatttcggcattttaccagttgagctaggacttc 39070023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 7906971 - 7907053
Alignment:
Q  1 acaagtggaggggcgggggttcgaacctccgtcaaagcgtccgacctaacaatttcgatattttaccagttgaactaggactt 83  Q
    ||||||||||| || ||||||||| || | ||||   |||||||||||||||||| || ||||| |||||||||||| |||||    
T  7906971 acaagtggaggtgctggggttcgatccccagtcacgacgtccgacctaacaattttgaaattttgccagttgaactaagactt 7907053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 7975055 - 7975137
Alignment:
Q  1 acaagtggaggggcgggggttcgaacctccgtcaaagcgtccgacctaacaatttcgatattttaccagttgaactaggactt 83  Q
    |||||||||||  | |||||||||||| | |||| ||| |||| |||||||||||||  ||||| |||||||| |||||||||    
T  7975055 acaagtggaggtaccggggttcgaaccccggtcatagcatccggcctaacaatttcggcattttgccagttgagctaggactt 7975137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 40 - 84
Target Start/End: Original strand, 16535023 - 16535067
Alignment:
Q  40 tccgacctaacaatttcgatattttaccagttgaactaggacttc 84  Q
    |||| |||||||||||||| |||||| ||||||||||||||||||    
T  16535023 tccggcctaacaatttcgacattttatcagttgaactaggacttc 16535067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 40 - 84
Target Start/End: Complemental strand, 35706900 - 35706856
Alignment:
Q  40 tccgacctaacaatttcgatattttaccagttgaactaggacttc 84  Q
    ||||||||||||||||||| ||||| |||||||| ||||||||||    
T  35706900 tccgacctaacaatttcgacattttgccagttgagctaggacttc 35706856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 16 - 84
Target Start/End: Complemental strand, 42211350 - 42211282
Alignment:
Q  16 ggggttcgaacctccgtcaaagcgtccgacctaacaatttcgatattttaccagttgaactaggacttc 84  Q
    |||||||||| | | |||| ||| | || |||||||||||||| |||||||||||||||||| ||||||    
T  42211350 ggggttcgaatcccggtcatagcatgcggcctaacaatttcgacattttaccagttgaactaagacttc 42211282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 40 - 83
Target Start/End: Original strand, 12541416 - 12541459
Alignment:
Q  40 tccgacctaacaatttcgatattttaccagttgaactaggactt 83  Q
    |||||||||||||||||| ||||||||||||||| |||| ||||    
T  12541416 tccgacctaacaatttcggtattttaccagttgacctagtactt 12541459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 13268016 - 13268099
Alignment:
Q  1 acaagtggaggggcgggggttcgaacctccgtcaaagcgtccgacctaacaatttcgatattttaccagttgaactaggacttc 84  Q
    |||||||||||  | |||||||||||| | ||||   | ||||||||||||||||||  ||||| |||||||| ||||||||||    
T  13268016 acaagtggaggtaccggggttcgaaccccggtcatgacatccgacctaacaatttcggcattttgccagttgagctaggacttc 13268099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 32023339 - 32023256
Alignment:
Q  1 acaagtggaggggcgggggttcgaacctccgtcaaagcgtccgacctaacaatttcgatattttaccagttgaactaggacttc 84  Q
    |||||||||||  | |||||||||||| | ||||  || |||| |||||||||||||  ||||| |||||||| ||||||||||    
T  32023339 acaagtggaggcaccggggttcgaaccccggtcatggcatccggcctaacaatttcggcattttgccagttgagctaggacttc 32023256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 38490441 - 38490524
Alignment:
Q  1 acaagtggaggggcgggggttcgaacctccgtcaaagcgtccgacctaacaatttcgatattttaccagttgaactaggacttc 84  Q
    |||||||||||  | |||||||||||| | ||||  || |||| |||||||||||||  ||||| |||||||| ||||||||||    
T  38490441 acaagtggaggtaccggggttcgaaccccagtcatggcatccggcctaacaatttcggcattttgccagttgagctaggacttc 38490524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 3 - 83
Target Start/End: Original strand, 32517861 - 32517942
Alignment:
Q  3 aagtggaggggcgggggttcgaacctccgtcaaagcgtccgacctaacaatttcgata-ttttaccagttgaactaggactt 83  Q
    |||||||||  | |||||||||||||| ||||   |||||  |||||||||||||| | ||||| |||||||||||||||||    
T  32517861 aagtggaggtaccggggttcgaacctcggtcatgacgtccagcctaacaatttcgacatttttatcagttgaactaggactt 32517942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 40 - 84
Target Start/End: Complemental strand, 18368842 - 18368798
Alignment:
Q  40 tccgacctaacaatttcgatattttaccagttgaactaggacttc 84  Q
    ||||||||||||||||||  ||||| |||||||| ||||||||||    
T  18368842 tccgacctaacaatttcggcattttgccagttgagctaggacttc 18368798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 40 - 84
Target Start/End: Complemental strand, 39310414 - 39310370
Alignment:
Q  40 tccgacctaacaatttcgatattttaccagttgaactaggacttc 84  Q
    |||| |||||||||||||||||||| | |||||| ||||||||||    
T  39310414 tccggcctaacaatttcgatattttgctagttgagctaggacttc 39310370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 40 - 84
Target Start/End: Complemental strand, 40592361 - 40592317
Alignment:
Q  40 tccgacctaacaatttcgatattttaccagttgaactaggacttc 84  Q
    ||||||||||||||||||  ||||| |||||||| ||||||||||    
T  40592361 tccgacctaacaatttcggcattttgccagttgagctaggacttc 40592317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 40 - 84
Target Start/End: Complemental strand, 42030291 - 42030248
Alignment:
Q  40 tccgacctaacaatttcgatattttaccagttgaactaggacttc 84  Q
    ||||||||||||||||||| |||||||| ||||| ||||||||||    
T  42030291 tccgacctaacaatttcgacattttacc-gttgagctaggacttc 42030248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 40 - 84
Target Start/End: Original strand, 42133522 - 42133566
Alignment:
Q  40 tccgacctaacaatttcgatattttaccagttgaactaggacttc 84  Q
    ||||||||||||||||||  ||||| |||||||||||| ||||||    
T  42133522 tccgacctaacaatttcggcattttgccagttgaactaagacttc 42133566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 61; Significance: 5e-26; HSPs: 31)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 1 - 89
Target Start/End: Original strand, 12702339 - 12702427
Alignment:
Q  1 acaagtggaggggcgggggttcgaacctccgtcaaagcgtccgacctaacaatttcgatattttaccagttgaactaggacttccagac 89  Q
    ||||||||||||| ||||||||||||||||||||| ||||||| ||||||||||||| ||||| ||||||||| |||||||||| ||||    
T  12702339 acaagtggaggggtgggggttcgaacctccgtcaaggcgtccggcctaacaatttcggtatttaaccagttgagctaggacttctagac 12702427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 41562529 - 41562446
Alignment:
Q  1 acaagtggaggggcgggggttcgaacctccgtcaaagcgtccgacctaacaatttcgatattttaccagttgaactaggacttc 84  Q
    |||||||||||  | |||||||||||| |  ||| ||| |||| |||||||||||||| |||||||||||||| ||||||||||    
T  41562529 acaagtggaggtaccggggttcgaaccccgatcatagcatccggcctaacaatttcgacattttaccagttgagctaggacttc 41562446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 45 - 90
Target Start/End: Original strand, 31665197 - 31665242
Alignment:
Q  45 cctaacaatttcgatattttaccagttgaactaggacttccagacg 90  Q
    ||||||||||||||||||||| |||||||||||||||||| |||||    
T  31665197 cctaacaatttcgatattttatcagttgaactaggacttctagacg 31665242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 3 - 80
Target Start/End: Complemental strand, 35222358 - 35222281
Alignment:
Q  3 aagtggaggggcgggggttcgaacctccgtcaaagcgtccgacctaacaatttcgatattttaccagttgaactagga 80  Q
    |||||||||  | |||||||||||||| ||||  |  ||||||||||||||||||| |||||||||||||| ||||||    
T  35222358 aagtggaggtaccggggttcgaacctcggtcatggtatccgacctaacaatttcgacattttaccagttgagctagga 35222281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 25199133 - 25199050
Alignment:
Q  1 acaagtggaggggcgggggttcgaacctccgtcaaagcgtccgacctaacaatttcgatattttaccagttgaactaggacttc 84  Q
    |||||||||||  | |||||||||| | | |||| ||| |||| |||||||||||||  |||||||||||||| ||||||||||    
T  25199133 acaagtggaggtaccggggttcgaaacccggtcatagcatccggcctaacaatttcggcattttaccagttgagctaggacttc 25199050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 34711596 - 34711679
Alignment:
Q  1 acaagtggaggggcgggggttcgaacctccgtcaaagcgtccgacctaacaatttcgatattttaccagttgaactaggacttc 84  Q
    |||||||||||  | |||||||||||| | ||||  || ||||||||||||||||||  ||||| |||||||| ||||||||||    
T  34711596 acaagtggaggtaccggggttcgaaccccggtcatggcatccgacctaacaatttcggcattttgccagttgagctaggacttc 34711679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 35421659 - 35421742
Alignment:
Q  1 acaagtggaggggcgggggttcgaacctccgtcaaagcgtccgacctaacaatttcgatattttaccagttgaactaggacttc 84  Q
    |||||||||||  | |||||||||||| | ||||  || | || |||||||||||||| ||||| |||||||||||||||||||    
T  35421659 acaagtggaggtactggggttcgaaccccggtcatggcattcggcctaacaatttcgacattttgccagttgaactaggacttc 35421742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 36586569 - 36586486
Alignment:
Q  1 acaagtggaggggcgggggttcgaacctccgtcaaagcgtccgacctaacaatttcgatattttaccagttgaactaggacttc 84  Q
    |||||||||||  | |||||||||||| | ||||  || ||||||||||||||||||  ||||| |||||||| ||||||||||    
T  36586569 acaagtggaggtaccggggttcgaaccccggtcatggcatccgacctaacaatttcggcattttgccagttgagctaggacttc 36586486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 37708488 - 37708570
Alignment:
Q  1 acaagtggaggggcgggggttcgaacctccgtcaaagcgtccgacctaacaatttcgatattttaccagttgaactaggactt 83  Q
    |||||||||||  | |||||||||||| | |||| ||| |||| |||||||||||||  ||||| |||||||| |||||||||    
T  37708488 acaagtggaggtaccggggttcgaaccccggtcatagcatccgtcctaacaatttcggcattttgccagttgagctaggactt 37708570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 16 - 84
Target Start/End: Complemental strand, 10096684 - 10096616
Alignment:
Q  16 ggggttcgaacctccgtcaaagcgtccgacctaacaatttcgatattttaccagttgaactaggacttc 84  Q
    |||||||||||| | ||||  || |||| |||||||||||||| ||||| |||||||| ||||||||||    
T  10096684 ggggttcgaaccccggtcatggcatccggcctaacaatttcgacattttgccagttgagctaggacttc 10096616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 16 - 83
Target Start/End: Complemental strand, 403738 - 403671
Alignment:
Q  16 ggggttcgaacctccgtcaaagcgtccgacctaacaatttcgatattttaccagttgaactaggactt 83  Q
    |||||||||||| | ||||  || ||||||||||||||||||  |||||| ||||||| |||||||||    
T  403738 ggggttcgaaccccggtcatggcatccgacctaacaatttcggcattttatcagttgagctaggactt 403671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 16 - 83
Target Start/End: Complemental strand, 1766780 - 1766713
Alignment:
Q  16 ggggttcgaacctccgtcaaagcgtccgacctaacaatttcgatattttaccagttgaactaggactt 83  Q
    |||||||||||||| |||| ||| ||||||||||||||||| | |||||  || |||| |||||||||    
T  1766780 ggggttcgaacctcggtcacagcatccgacctaacaatttcaacattttgacaattgagctaggactt 1766713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 4312220 - 4312137
Alignment:
Q  1 acaagtggaggggcgggggttcgaacctccgtcaaagcgtccgacctaacaatttcgatattttaccagttgaactaggacttc 84  Q
    |||||||||||  | || ||||||||| | ||||  || ||||||||||||||||||  ||||| |||||||| ||||||||||    
T  4312220 acaagtggaggtaccggagttcgaaccccagtcatggcatccgacctaacaatttcggcattttgccagttgagctaggacttc 4312137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 40 - 83
Target Start/End: Original strand, 4694767 - 4694810
Alignment:
Q  40 tccgacctaacaatttcgatattttaccagttgaactaggactt 83  Q
    ||||||||||||||||||| ||||| |||||||| |||||||||    
T  4694767 tccgacctaacaatttcgacattttgccagttgagctaggactt 4694810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 4977075 - 4977158
Alignment:
Q  1 acaagtggaggggcgggggttcgaacctccgtcaaagcgtccgacctaacaatttcgatattttaccagttgaactaggacttc 84  Q
    |||||||||||  | |||||||||||| | ||||  | ||||| |||||||||||||  ||||| |||||||| ||||||||||    
T  4977075 acaagtggaggtaccggggttcgaaccccggtcatggggtccggcctaacaatttcggcattttgccagttgagctaggacttc 4977158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 8570032 - 8569949
Alignment:
Q  1 acaagtggaggggcgggggttcgaacctccgtcaaagcgtccgacctaacaatttcgatattttaccagttgaactaggacttc 84  Q
    |||||||||||  | |||||||||||| | ||||  || |||| ||||||||||||| | |||| |||||||| ||||||||||    
T  8570032 acaagtggaggtaccggggttcgaaccccagtcattgcatccggcctaacaatttcggtcttttgccagttgagctaggacttc 8569949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 14188177 - 14188094
Alignment:
Q  1 acaagtggaggggcgggggttcgaacctccgtcaaagcgtccgacctaacaatttcgatattttaccagttgaactaggacttc 84  Q
    |||||||||||  | ||||||||||||   ||||  || |||| |||||||||||||| ||||| |||||||| ||||||||||    
T  14188177 acaagtggaggtaccggggttcgaacccaggtcatggcatccggcctaacaatttcgacattttgccagttgagctaggacttc 14188094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 26738058 - 26737975
Alignment:
Q  1 acaagtggaggggcgggggttcgaacctccgtcaaagcgtccgacctaacaatttcgatattttaccagttgaactaggacttc 84  Q
    |||||||||||  | |||||||||||| | ||||   | |||| |||||||||||||  |||||||||||||| ||||||||||    
T  26738058 acaagtggaggtaccggggttcgaaccccggtcatgacatccggcctaacaatttcggcattttaccagttgagctaggacttc 26737975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 27544957 - 27545040
Alignment:
Q  1 acaagtggaggggcgggggttcgaacctccgtcaaagcgtccgacctaacaatttcgatattttaccagttgaactaggacttc 84  Q
    |||||||||||  | |||||||||||| | | || | | ||||||||||||||||||| ||||| |||||||| |||| |||||    
T  27544957 acaagtggaggtaccggggttcgaaccccggacataacatccgacctaacaatttcgacattttgccagttgagctagaacttc 27545040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 37295213 - 37295130
Alignment:
Q  1 acaagtggaggggcgggggttcgaacctccgtcaaagcgtccgacctaacaatttcgatattttaccagttgaactaggacttc 84  Q
    |||||||||||  | |||||||||||| | ||||  || |||| |||||||||||||  ||||| |||||||| ||||||||||    
T  37295213 acaagtggaggtaccggggttcgaaccccggtcatggcatccggcctaacaatttcggcattttgccagttgagctaggacttc 37295130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 16 - 83
Target Start/End: Complemental strand, 37817448 - 37817381
Alignment:
Q  16 ggggttcgaacctccgtcaaagcgtccgacctaacaatttcgatattttaccagttgaactaggactt 83  Q
    |||||||||||| | ||||  || ||||||||||||||||||  ||||| |||||||| |||||||||    
T  37817448 ggggttcgaaccccggtcatggcatccgacctaacaatttcgtcattttgccagttgagctaggactt 37817381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 16 - 83
Target Start/End: Complemental strand, 37953855 - 37953788
Alignment:
Q  16 ggggttcgaacctccgtcaaagcgtccgacctaacaatttcgatattttaccagttgaactaggactt 83  Q
    |||||||||||| |  ||| ||| |||| |||||||||||||| ||||| |||||||| |||||||||    
T  37953855 ggggttcgaaccacaatcatagcatccggcctaacaatttcgacatttttccagttgagctaggactt 37953788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 16 - 84
Target Start/End: Complemental strand, 2733688 - 2733620
Alignment:
Q  16 ggggttcgaacctccgtcaaagcgtccgacctaacaatttcgatattttaccagttgaactaggacttc 84  Q
    |||||||||||| | ||||  || |||| |||||||||||||  ||||| |||||||| ||||||||||    
T  2733688 ggggttcgaaccccggtcatggcatccggcctaacaatttcggcattttgccagttgagctaggacttc 2733620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 40 - 84
Target Start/End: Original strand, 3728406 - 3728450
Alignment:
Q  40 tccgacctaacaatttcgatattttaccagttgaactaggacttc 84  Q
    |||||||||||||||||||||||||  ||||||| || |||||||    
T  3728406 tccgacctaacaatttcgatattttgtcagttgagctgggacttc 3728450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 40 - 84
Target Start/End: Original strand, 7772130 - 7772174
Alignment:
Q  40 tccgacctaacaatttcgatattttaccagttgaactaggacttc 84  Q
    |||| |||||||||||||  |||||||||||||| ||||||||||    
T  7772130 tccggcctaacaatttcggcattttaccagttgagctaggacttc 7772174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 40 - 84
Target Start/End: Original strand, 8547210 - 8547254
Alignment:
Q  40 tccgacctaacaatttcgatattttaccagttgaactaggacttc 84  Q
    ||||||||||||||||||  ||||| |||||||| ||||||||||    
T  8547210 tccgacctaacaatttcggcattttgccagttgagctaggacttc 8547254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 40 - 84
Target Start/End: Original strand, 9998723 - 9998767
Alignment:
Q  40 tccgacctaacaatttcgatattttaccagttgaactaggacttc 84  Q
    |||| |||||||||||||  ||||| |||||||||||||||||||    
T  9998723 tccggcctaacaatttcggcattttgccagttgaactaggacttc 9998767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 25063427 - 25063343
Alignment:
Q  1 acaagtggaggggcgggggttcgaacctccgtcaaagcgtccgacctaacaatttcgata-ttttaccagttgaactaggacttc 84  Q
    |||||||||||  | |||||||||||| | ||||  || |||| |||||||||||||  | |||| |||||||||||||||||||    
T  25063427 acaagtggaggtaccggggttcgaaccccggtcatggcatccggcctaacaatttcggcatttttgccagttgaactaggacttc 25063343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 40 - 84
Target Start/End: Complemental strand, 26675605 - 26675561
Alignment:
Q  40 tccgacctaacaatttcgatattttaccagttgaactaggacttc 84  Q
    |||| |||||||||||||  |||||||||||||| ||||||||||    
T  26675605 tccggcctaacaatttcggcattttaccagttgagctaggacttc 26675561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 45 - 84
Target Start/End: Original strand, 29845169 - 29845209
Alignment:
Q  45 cctaacaatttcgata-ttttaccagttgaactaggacttc 84  Q
    |||||||||||||||| |||| |||||||||||||||||||    
T  29845169 cctaacaatttcgatatttttgccagttgaactaggacttc 29845209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 40 - 84
Target Start/End: Original strand, 34540144 - 34540188
Alignment:
Q  40 tccgacctaacaatttcgatattttaccagttgaactaggacttc 84  Q
    |||| |||||||||||||  ||||| |||||||||||||||||||    
T  34540144 tccggcctaacaatttcggcattttgccagttgaactaggacttc 34540188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 60; Significance: 2e-25; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 4129032 - 4128949
Alignment:
Q  1 acaagtggaggggcgggggttcgaacctccgtcaaagcgtccgacctaacaatttcgatattttaccagttgaactaggacttc 84  Q
    |||||||||||||||||| |||||||| ||||||| ||||||| ||||||||||||| ||||||||||||||| ||||||||||    
T  4129032 acaagtggaggggcggggattcgaacccccgtcaaggcgtccggcctaacaatttcggtattttaccagttgagctaggacttc 4128949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 2711391 - 2711308
Alignment:
Q  1 acaagtggaggggcgggggttcgaacctccgtcaaagcgtccgacctaacaatttcgatattttaccagttgaactaggacttc 84  Q
    |||||||||||| |||||||||||||  ||||||| ||||||||||||||||||||| |||||||||||||||  |||||||||    
T  2711391 acaagtggagggacgggggttcgaactcccgtcaaggcgtccgacctaacaatttcggtattttaccagttgagttaggacttc 2711308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 9063017 - 9063089
Alignment:
Q  1 acaagtggaggggcgggggttcgaacctccgtcaaagcgtccgacctaacaatttcgatattttaccagttga 73  Q
    ||||||||||||||||||||||||||| |||||||  |||||  | |||||||||||||| ||||||||||||    
T  9063017 acaagtggaggggcgggggttcgaacccccgtcaagacgtccagcttaacaatttcgatactttaccagttga 9063089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 94
Target Start/End: Complemental strand, 2959080 - 2958987
Alignment:
Q  1 acaagtggaggggcgggggttcgaacctccgtcaaagcgtccgacctaacaatttcgatattttaccagttgaactaggacttccagacgacac 94  Q
    |||||||||||  | |||||||||||| | ||||  || |||| |||||||||||||| ||||||||||||||| ||| ||||| ||| |||||    
T  2959080 acaagtggaggtaccggggttcgaaccccggtcatggcatccggcctaacaatttcgacattttaccagttgaattagaacttctagatgacac 2958987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 31 - 89
Target Start/End: Original strand, 31642757 - 31642815
Alignment:
Q  31 gtcaaagcgtccgacctaacaatttcgatattttaccagttgaactaggacttccagac 89  Q
    |||||||||||||||||||||||||||  |||||  ||||||||||| ||||| |||||    
T  31642757 gtcaaagcgtccgacctaacaatttcggcattttgtcagttgaactatgacttgcagac 31642815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 40 - 84
Target Start/End: Complemental strand, 7098854 - 7098810
Alignment:
Q  40 tccgacctaacaatttcgatattttaccagttgaactaggacttc 84  Q
    |||| |||||||||||||| |||||||||||||| ||||||||||    
T  7098854 tccggcctaacaatttcgacattttaccagttgagctaggacttc 7098810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 4083674 - 4083591
Alignment:
Q  1 acaagtggaggggcgggggttcgaacctccgtcaaagcgtccgacctaacaatttcgatattttaccagttgaactaggacttc 84  Q
    |||||||||||  | || ||||||||| | ||||  || ||||||||||||||||||  ||||| |||||||| ||||||||||    
T  4083674 acaagtggaggtaccggtgttcgaaccccggtcatggcatccgacctaacaatttcggcattttgccagttgagctaggacttc 4083591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 8448183 - 8448266
Alignment:
Q  1 acaagtggaggggcgggggttcgaacctccgtcaaagcgtccgacctaacaatttcgatattttaccagttgaactaggacttc 84  Q
    |||||||||||  | |||||||||||| | ||||  || |||| |||||||||||||  ||||| |||||||| ||||||||||    
T  8448183 acaagtggaggtaccggggttcgaaccccggtcatggcatccggcctaacaatttcggcattttgccagttgagctaggacttc 8448266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 8456987 - 8457070
Alignment:
Q  1 acaagtggaggggcgggggttcgaacctccgtcaaagcgtccgacctaacaatttcgatattttaccagttgaactaggacttc 84  Q
    |||||||||||  | |||||||||||| | ||||  || |||| |||||||||||||  ||||| |||||||| ||||||||||    
T  8456987 acaagtggaggtaccggggttcgaaccccggtcatggcatccggcctaacaatttcggcattttgccagttgagctaggacttc 8457070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 8939713 - 8939630
Alignment:
Q  1 acaagtggaggggcgggggttcgaacctccgtcaaagcgtccgacctaacaatttcgatattttaccagttgaactaggacttc 84  Q
    |||||||||||  | |||||||||||| | ||||   | ||||||||||||||||||  ||||| |||||||| ||||||||||    
T  8939713 acaagtggaggtaccggggttcgaaccccggtcatgacatccgacctaacaatttcggcattttgccagttgagctaggacttc 8939630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 3 - 84
Target Start/End: Complemental strand, 10531471 - 10531390
Alignment:
Q  3 aagtggaggggcgggggttcgaacctccgtcaaagcgtccgacctaacaatttcgatattttaccagttgaactaggacttc 84  Q
    |||||||||  | |||||||||||| |  ||| ||| |||| ||||||||||||||||||||  ||||||| |||| |||||    
T  10531471 aagtggaggtaccggggttcgaaccccgatcatagcatccggcctaacaatttcgatattttgtcagttgagctagaacttc 10531390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 40 - 84
Target Start/End: Original strand, 2395637 - 2395681
Alignment:
Q  40 tccgacctaacaatttcgatattttaccagttgaactaggacttc 84  Q
    |||||||||||||||||| |||||| | |||||| ||||||||||    
T  2395637 tccgacctaacaatttcgttattttgctagttgacctaggacttc 2395681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 40 - 84
Target Start/End: Complemental strand, 10181093 - 10181049
Alignment:
Q  40 tccgacctaacaatttcgatattttaccagttgaactaggacttc 84  Q
    ||||||||||||||||||  ||||| |||||||| ||||||||||    
T  10181093 tccgacctaacaatttcggcattttgccagttgagctaggacttc 10181049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 40 - 84
Target Start/End: Complemental strand, 21513120 - 21513076
Alignment:
Q  40 tccgacctaacaatttcgatattttaccagttgaactaggacttc 84  Q
    |||| |||||||||||||| ||||| |||||||| ||||||||||    
T  21513120 tccggcctaacaatttcgacattttgccagttgagctaggacttc 21513076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 16 - 84
Target Start/End: Complemental strand, 29183730 - 29183662
Alignment:
Q  16 ggggttcgaacctccgtcaaagcgtccgacctaacaatttcgatattttaccagttgaactaggacttc 84  Q
    |||||||||||| | ||||  || |||| ||||||||| ||| |||||||||| |||| ||||||||||    
T  29183730 ggggttcgaaccccggtcatggcatccggcctaacaatgtcggtattttaccaattgagctaggacttc 29183662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 55; Significance: 2e-22; HSPs: 28)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 38886430 - 38886512
Alignment:
Q  1 acaagtggaggggcgggggttcgaacctccgtcaaagcgtccgacctaacaatttcgatattttaccagttgaactaggactt 83  Q
    |||||||||||||||||||||||| || ||||||| ||||| | ||||||||||||| ||||||||||||||| |||||||||    
T  38886430 acaagtggaggggcgggggttcgaccccccgtcaaggcgtctggcctaacaatttcggtattttaccagttgagctaggactt 38886512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 13948191 - 13948108
Alignment:
Q  1 acaagtggaggggcgggggttcgaacctccgtcaaagcgtccgacctaacaatttcgatattttaccagttgaactaggacttc 84  Q
    ||||||||||| || |||||||||||| |  ||| ||| || |||||||||||||||||||||||| |||||| |||| |||||    
T  13948191 acaagtggaggcgccggggttcgaaccccgatcatagcatctgacctaacaatttcgatattttactagttgagctagaacttc 13948108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 15331103 - 15331185
Alignment:
Q  1 acaagtggaggggcgggggttcgaacctccgtcaaagcgtccgacctaacaatttcgatattttaccagttgaactaggactt 83  Q
    |||||||||||  | |||||||||||||| ||||  || ||||||||||||||||||  ||||| |||||||| |||||||||    
T  15331103 acaagtggaggtaccggggttcgaacctcggtcatggcatccgacctaacaatttcggcatttttccagttgagctaggactt 15331185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 16 - 89
Target Start/End: Complemental strand, 16689158 - 16689085
Alignment:
Q  16 ggggttcgaacctccgtcaaagcgtccgacctaacaatttcgatattttaccagttgaactaggacttccagac 89  Q
    |||||||||||| |  ||||  |||||||||||| |||||||||||||| |||||||| ||||||||| |||||    
T  16689158 ggggttcgaaccccgatcaagacgtccgacctaaaaatttcgatattttgccagttgagctaggacttgcagac 16689085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 40 - 80
Target Start/End: Original strand, 13048887 - 13048927
Alignment:
Q  40 tccgacctaacaatttcgatattttaccagttgaactagga 80  Q
    |||| ||||||||||||||||||||||||||||||||||||    
T  13048887 tccggcctaacaatttcgatattttaccagttgaactagga 13048927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 40 - 80
Target Start/End: Original strand, 13053884 - 13053924
Alignment:
Q  40 tccgacctaacaatttcgatattttaccagttgaactagga 80  Q
    |||| ||||||||||||||||||||||||||||||||||||    
T  13053884 tccggcctaacaatttcgatattttaccagttgaactagga 13053924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 39 - 84
Target Start/End: Complemental strand, 8214672 - 8214627
Alignment:
Q  39 gtccgacctaacaatttcgatattttaccagttgaactaggacttc 84  Q
    ||||| |||||||||||||||||||| |||||||| ||||||||||    
T  8214672 gtccggcctaacaatttcgatatttttccagttgagctaggacttc 8214627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 40 - 84
Target Start/End: Original strand, 19279932 - 19279976
Alignment:
Q  40 tccgacctaacaatttcgatattttaccagttgaactaggacttc 84  Q
    ||||||||||||||||||  |||||||||||||| ||||||||||    
T  19279932 tccgacctaacaatttcggcattttaccagttgagctaggacttc 19279976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 40 - 84
Target Start/End: Complemental strand, 40685577 - 40685533
Alignment:
Q  40 tccgacctaacaatttcgatattttaccagttgaactaggacttc 84  Q
    ||||||||||||||||||| ||||| |||||||| ||||||||||    
T  40685577 tccgacctaacaatttcgacattttgccagttgagctaggacttc 40685533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 40 - 84
Target Start/End: Complemental strand, 43025934 - 43025890
Alignment:
Q  40 tccgacctaacaatttcgatattttaccagttgaactaggacttc 84  Q
    |||| ||||||||||||||||||||  ||||||||||||||||||    
T  43025934 tccggcctaacaatttcgatattttgtcagttgaactaggacttc 43025890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 16 - 80
Target Start/End: Original strand, 45007747 - 45007811
Alignment:
Q  16 ggggttcgaacctccgtcaaagcgtccgacctaacaatttcgatattttaccagttgaactagga 80  Q
    |||||||||||||| ||||   | |||| |||||||||||||||||||||||| |||| ||||||    
T  45007747 ggggttcgaacctcggtcatgacatccggcctaacaatttcgatattttaccaattgagctagga 45007811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 16 - 84
Target Start/End: Complemental strand, 50248101 - 50248033
Alignment:
Q  16 ggggttcgaacctccgtcaaagcgtccgacctaacaatttcgatattttaccagttgaactaggacttc 84  Q
    |||||||||||||| ||||   | |||| |||||||||||||| |||||| ||||||| ||||||||||    
T  50248101 ggggttcgaacctcggtcatgacatccggcctaacaatttcgacattttatcagttgagctaggacttc 50248033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 10635576 - 10635493
Alignment:
Q  1 acaagtggaggggcgggggttcgaacctccgtcaaagcgtccgacctaacaatttcgatattttaccagttgaactaggacttc 84  Q
    |||||||||||  | |||||||||||| | ||||  || |||| |||||||||||||  ||||| |||||||| ||||||||||    
T  10635576 acaagtggaggtaccggggttcgaaccccggtcatggcatccggcctaacaatttcggcattttgccagttgagctaggacttc 10635493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 17068239 - 17068156
Alignment:
Q  1 acaagtggaggggcgggggttcgaacctccgtcaaagcgtccgacctaacaatttcgatattttaccagttgaactaggacttc 84  Q
    |||||||||||  | |||||||||||| |  |||  || |||| |||||||||||||  |||||||||||||| ||||||||||    
T  17068239 acaagtggaggtaccggggttcgaaccccgctcatggcatccggcctaacaatttcggcattttaccagttgagctaggacttc 17068156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 19338219 - 19338302
Alignment:
Q  1 acaagtggaggggcgggggttcgaacctccgtcaaagcgtccgacctaacaatttcgatattttaccagttgaactaggacttc 84  Q
    |||||||||||  | |||||||||||| | ||||  || |||| |||||||||||||  ||||| |||||||| ||||||||||    
T  19338219 acaagtggaggtaccggggttcgaaccccggtcatggcatccggcctaacaatttcggcattttgccagttgagctaggacttc 19338302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 23225331 - 23225414
Alignment:
Q  1 acaagtggaggggcgggggttcgaacctccgtcaaagcgtccgacctaacaatttcgata-ttttaccagttgaactaggactt 83  Q
    |||||||||||  | |||||||||||| | ||||  || |||||||||||||||| || | ||||||||||||| |||||||||    
T  23225331 acaagtggaggtaccggggttcgaacccctgtcatggcatccgacctaacaattttgacatttttaccagttgagctaggactt 23225414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 25820991 - 25821074
Alignment:
Q  1 acaagtggaggggcgggggttcgaacctccgtcaaagcgtccgacctaacaatttcgatattttaccagttgaactaggacttc 84  Q
    |||||||||||  |  ||||||||||| | ||||  || |||| |||||||||||||| |||||| ||||||| ||||||||||    
T  25820991 acaagtggaggtaccagggttcgaaccccggtcatggcatccggcctaacaatttcgacattttatcagttgagctaggacttc 25821074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 29005177 - 29005094
Alignment:
Q  1 acaagtggaggggcgggggttcgaacctccgtcaaagcgtccgacctaacaatttcgatattttaccagttgaactaggacttc 84  Q
    |||||||||||  | |||||||||||| | ||||  || |||| |||||||||||||  ||||| |||||||| ||||||||||    
T  29005177 acaagtggaggtaccggggttcgaaccccggtcatggcatccggcctaacaatttcggcattttgccagttgagctaggacttc 29005094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 40 - 83
Target Start/End: Original strand, 43500223 - 43500266
Alignment:
Q  40 tccgacctaacaatttcgatattttaccagttgaactaggactt 83  Q
    ||||||||||||||||||| |||||||||||||| ||| |||||    
T  43500223 tccgacctaacaatttcgacattttaccagttgagctaagactt 43500266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 49948328 - 49948245
Alignment:
Q  1 acaagtggaggggcgggggttcgaacctccgtcaaagcgtccgacctaacaatttcgatattttaccagttgaactaggacttc 84  Q
    |||||||||||  | |||||||||| | | ||||  || |||| |||||||||||||| ||||| |||||||| ||||||||||    
T  49948328 acaagtggaggtactggggttcgaatcccggtcatggcatccggcctaacaatttcgacattttgccagttgagctaggacttc 49948245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 36586338 - 36586256
Alignment:
Q  1 acaagtggaggggcgggggttcgaacctccgtcaaagcgtccgacctaacaatttcgatattttaccagttgaactaggactt 83  Q
    |||||||||||  | |||||||||||| |  |||  || |||| |||||||||||||| ||||||||||||||  ||||||||    
T  36586338 acaagtggaggtaccggggttcgaaccccgatcacggcatccggcctaacaatttcgacattttaccagttgagttaggactt 36586256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 46 - 83
Target Start/End: Original strand, 39787736 - 39787773
Alignment:
Q  46 ctaacaatttcgatattttaccagttgaactaggactt 83  Q
    ||||||||||||| |||||||||||||| |||||||||    
T  39787736 ctaacaatttcgacattttaccagttgagctaggactt 39787773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 38 - 83
Target Start/End: Complemental strand, 41651123 - 41651078
Alignment:
Q  38 cgtccgacctaacaatttcgatattttaccagttgaactaggactt 83  Q
    ||||| ||||||||||||||  |||||||||||||| |||||||||    
T  41651123 cgtccaacctaacaatttcggcattttaccagttgagctaggactt 41651078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 40 - 84
Target Start/End: Complemental strand, 5598349 - 5598305
Alignment:
Q  40 tccgacctaacaatttcgatattttaccagttgaactaggacttc 84  Q
    ||||||||||||||||||  ||||| |||||||| ||||||||||    
T  5598349 tccgacctaacaatttcggcatttttccagttgagctaggacttc 5598305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 40 - 84
Target Start/End: Complemental strand, 11403217 - 11403173
Alignment:
Q  40 tccgacctaacaatttcgatattttaccagttgaactaggacttc 84  Q
    ||||||||||||||||||  ||||| |||||||| ||||||||||    
T  11403217 tccgacctaacaatttcggcattttcccagttgagctaggacttc 11403173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 40 - 84
Target Start/End: Original strand, 22561247 - 22561291
Alignment:
Q  40 tccgacctaacaatttcgatattttaccagttgaactaggacttc 84  Q
    |||| ||||||||||||| |||||| |||||| ||||||||||||    
T  22561247 tccggcctaacaatttcggtattttgccagttaaactaggacttc 22561291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 40 - 84
Target Start/End: Complemental strand, 30455252 - 30455208
Alignment:
Q  40 tccgacctaacaatttcgatattttaccagttgaactaggacttc 84  Q
    |||| |||||||||||||| |||||| ||||||| ||||||||||    
T  30455252 tccggcctaacaatttcgacattttatcagttgagctaggacttc 30455208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 16 - 84
Target Start/End: Original strand, 43676080 - 43676148
Alignment:
Q  16 ggggttcgaacctccgtcaaagcgtccgacctaacaatttcgatattttaccagttgaactaggacttc 84  Q
    |||||||||||| | ||||  || |||| |||||||||||||  ||||| |||||||| ||||||||||    
T  43676080 ggggttcgaaccccggtcatggcatccggcctaacaatttcggcattttgccagttgagctaggacttc 43676148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 28)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 3 - 84
Target Start/End: Original strand, 6384562 - 6384642
Alignment:
Q  3 aagtggaggggcgggggttcgaacctccgtcaaagcgtccgacctaacaatttcgatattttaccagttgaactaggacttc 84  Q
    |||||||||  | |||||||||||| ||||||  ||||||| ||||||||||||| ||||||||||||||| ||||||||||    
T  6384562 aagtggaggcaccggggttcgaacc-ccgtcatggcgtccggcctaacaatttcggtattttaccagttgagctaggacttc 6384642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 12014773 - 12014856
Alignment:
Q  1 acaagtggaggggcgggggttcgaacctccgtcaaagcgtccgacctaacaatttcgatattttaccagttgaactaggacttc 84  Q
    |||||||||||  | |||||||||||| | ||||| ||||| | ||||||||||||| |||||||||||||||  |||||||||    
T  12014773 acaagtggaggcaccggggttcgaaccccggtcaaggcgtctggcctaacaatttcggtattttaccagttgagttaggacttc 12014856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 39 - 83
Target Start/End: Original strand, 5841558 - 5841602
Alignment:
Q  39 gtccgacctaacaatttcgatattttaccagttgaactaggactt 83  Q
    |||||||||||||||||||||||||||||| |||| |||||||||    
T  5841558 gtccgacctaacaatttcgatattttaccaattgagctaggactt 5841602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 1573882 - 1573965
Alignment:
Q  1 acaagtggaggggcgggggttcgaacctccgtcaaagcgtccgacctaacaatttcgatattttaccagttgaactaggacttc 84  Q
    |||||||||||  | |||||||||||| | ||||  || |||| |||||||||||||  |||||||||||||| ||||||||||    
T  1573882 acaagtggaggtaccggggttcgaaccccggtcatggcatccggcctaacaatttcggcattttaccagttgagctaggacttc 1573965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 4106641 - 4106558
Alignment:
Q  1 acaagtggaggggcgggggttcgaacctccgtcaaagcgtccgacctaacaatttcgatattttaccagttgaactaggacttc 84  Q
    |||||||||||  | |||||||||||| | ||||  || |||| |||||||||||||  |||||||||||||| ||||||||||    
T  4106641 acaagtggaggtaccggggttcgaaccccggtcatggcatccggcctaacaatttcggcattttaccagttgagctaggacttc 4106558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 4227421 - 4227338
Alignment:
Q  1 acaagtggaggggcgggggttcgaacctccgtcaaagcgtccgacctaacaatttcgatattttaccagttgaactaggacttc 84  Q
    |||||||||||  | |||||||||||| |  |||  || |||||||||||||||||| ||||||||| ||||| ||||||||||    
T  4227421 acaagtggaggtaccggggttcgaaccccgatcatggcatccgacctaacaatttcggtattttaccggttgatctaggacttc 4227338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 45041774 - 45041857
Alignment:
Q  1 acaagtggaggggcgggggttcgaacctccgtcaaagcgtccgacctaacaatttcgatattttaccagttgaactaggacttc 84  Q
    |||||||||||  | |||||||||||| | ||||| || ||||||||||||||||||  ||||| |||||||| ||| ||||||    
T  45041774 acaagtggaggtaccggggttcgaaccccggtcaaggcatccgacctaacaatttcggcattttgccagttgagctaagacttc 45041857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 19 - 84
Target Start/End: Complemental strand, 24382660 - 24382595
Alignment:
Q  19 gttcgaacctccgtcaaagcgtccgacctaacaatttcgatattttaccagttgaactaggacttc 84  Q
    ||||||||| |  ||| ||| |||||||||||||||||| ||||||||||||||| |||| |||||    
T  24382660 gttcgaaccccaatcatagcatccgacctaacaatttcggtattttaccagttgagctagaacttc 24382595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 43 - 84
Target Start/End: Complemental strand, 37920014 - 37919973
Alignment:
Q  43 gacctaacaatttcgatattttaccagttgaactaggacttc 84  Q
    |||||||||||||||||||||| |||||||| ||||||||||    
T  37920014 gacctaacaatttcgatattttgccagttgagctaggacttc 37919973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 3 - 84
Target Start/End: Original strand, 40857383 - 40857464
Alignment:
Q  3 aagtggaggggcgggggttcgaacctccgtcaaagcgtccgacctaacaatttcgatattttaccagttgaactaggacttc 84  Q
    |||||||||  | |||||||||||| |  |||  || ||||||||||||||||||| ||||||||| |||| ||||||||||    
T  40857383 aagtggaggtaccggggttcgaaccccgatcatggcatccgacctaacaatttcgacattttaccatttgagctaggacttc 40857464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 40 - 84
Target Start/End: Complemental strand, 10422526 - 10422482
Alignment:
Q  40 tccgacctaacaatttcgatattttaccagttgaactaggacttc 84  Q
    ||||||||||||||||||||||||| |||||||| ||| ||||||    
T  10422526 tccgacctaacaatttcgatattttgccagttgagctaagacttc 10422482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 17 - 80
Target Start/End: Complemental strand, 21422047 - 21421983
Alignment:
Q  17 gggttcgaacctccgtcaaagcgtccgacctaacaatttcgata-ttttaccagttgaactagga 80  Q
    |||||| |||||| ||||   ||||||| ||||||||||||||| ||||||||||||||||||||    
T  21422047 gggttcaaacctcagtcatgacgtccgatctaacaatttcgatatttttaccagttgaactagga 21421983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 3 - 83
Target Start/End: Original strand, 25648199 - 25648279
Alignment:
Q  3 aagtggaggggcgggggttcgaacctccgtcaaagcgtccgacctaacaatttcgatattttaccagttgaactaggactt 83  Q
    ||||||||| || | |||||||||| |  ||||||||| |  |||||||||||||| |||| |||| ||||||||||||||    
T  25648199 aagtggaggtgccgcggttcgaaccccaatcaaagcgttcagcctaacaatttcgacatttaaccaattgaactaggactt 25648279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 40 - 80
Target Start/End: Original strand, 28649446 - 28649486
Alignment:
Q  40 tccgacctaacaatttcgatattttaccagttgaactagga 80  Q
    |||||||||||||||||| ||||||||||||||| ||||||    
T  28649446 tccgacctaacaatttcgctattttaccagttgagctagga 28649486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 4069157 - 4069240
Alignment:
Q  1 acaagtggaggggcgggggttcgaacctccgtcaaagcgtccgacctaacaatttcgatattttaccagttgaactaggacttc 84  Q
    |||||||||||  | |||||||||||| | ||||  || |||| ||||||||||||| |||||| ||||||||  |||||||||    
T  4069157 acaagtggaggtaccggggttcgaaccccggtcatggcatccggcctaacaatttcggtattttgccagttgagttaggacttc 4069240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 17 - 84
Target Start/End: Original strand, 4887570 - 4887637
Alignment:
Q  17 gggttcgaacctccgtcaaagcgtccgacctaacaatttcgatattttaccagttgaactaggacttc 84  Q
    ||||||||||||| ||||  || |||| |||||||||||||  ||||| |||||||| ||||||||||    
T  4887570 gggttcgaacctcggtcatggcatccggcctaacaatttcggcattttgccagttgagctaggacttc 4887637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 9380078 - 9379995
Alignment:
Q  1 acaagtggaggggcgggggttcgaacctccgtcaaagcgtccgacctaacaatttcgatattttaccagttgaactaggacttc 84  Q
    |||||||||||  | |||||||||||| | ||||   | |||| |||||||||||||| ||||| |||||||| ||||||||||    
T  9380078 acaagtggaggtactggggttcgaaccccggtcatgacatccggcctaacaatttcgacattttgccagttgagctaggacttc 9379995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 18 - 84
Target Start/End: Complemental strand, 32986173 - 32986107
Alignment:
Q  18 ggttcgaacctccgtcaaagcgtccgacctaacaatttcgatattttaccagttgaactaggacttc 84  Q
    |||||||||| |  ||| ||| |||| ||||||||||||||||||||| ||||||| |||| |||||    
T  32986173 ggttcgaaccccaatcatagcatccgccctaacaatttcgatattttatcagttgagctagaacttc 32986107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 19 - 84
Target Start/End: Complemental strand, 31717366 - 31717301
Alignment:
Q  19 gttcgaacctccgtcaaagcgtccgacctaacaatttcgatattttaccagttgaactaggacttc 84  Q
    ||||||||| | ||||  || |||| |||||||||||||  |||||||||||||| ||||||||||    
T  31717366 gttcgaaccccggtcatggcatccggcctaacaatttcggcattttaccagttgagctaggacttc 31717301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 16 - 84
Target Start/End: Complemental strand, 33228772 - 33228703
Alignment:
Q  16 ggggttcgaacctccgtcaaagcgtccgacctaacaatttcgata-ttttaccagttgaactaggacttc 84  Q
    |||||||||||||| ||||  || |||| |||||||||||||| | |||| |||||||| ||||||||||    
T  33228772 ggggttcgaacctcggtcatggcatccggcctaacaatttcgacatttttgccagttgagctaggacttc 33228703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 3 - 84
Target Start/End: Original strand, 47584714 - 47584795
Alignment:
Q  3 aagtggaggggcgggggttcgaacctccgtcaaagcgtccgacctaacaatttcgatattttaccagttgaactaggacttc 84  Q
    |||||||||  | |||||||||||| | ||||  || |||| ||||||||| |||| ||||| |||||||| ||||||||||    
T  47584714 aagtggaggtaccggggttcgaaccccggtcatggcatccggcctaacaatgtcgacattttgccagttgagctaggacttc 47584795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 40 - 84
Target Start/End: Original strand, 3861416 - 3861460
Alignment:
Q  40 tccgacctaacaatttcgatattttaccagttgaactaggacttc 84  Q
    |||| |||||||||||||| ||||| |||||| ||||||||||||    
T  3861416 tccggcctaacaatttcgacattttgccagttaaactaggacttc 3861460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 40 - 84
Target Start/End: Complemental strand, 18944972 - 18944928
Alignment:
Q  40 tccgacctaacaatttcgatattttaccagttgaactaggacttc 84  Q
    |||| |||||||||||||  ||||| |||||||||||||||||||    
T  18944972 tccggcctaacaatttcggcattttgccagttgaactaggacttc 18944928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 3 - 83
Target Start/End: Original strand, 22752877 - 22752957
Alignment:
Q  3 aagtggaggggcgggggttcgaacctccgtcaaagcgtccgacctaacaatttcgatattttaccagttgaactaggactt 83  Q
    |||||||||  | |||||||||||| |  ||| ||| |||| ||| |||||||||||||||| | |||||| |||||||||    
T  22752877 aagtggaggtactggggttcgaaccccgatcatagcatccggccttacaatttcgatatttttctagttgagctaggactt 22752957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 40 - 84
Target Start/End: Original strand, 32251415 - 32251459
Alignment:
Q  40 tccgacctaacaatttcgatattttaccagttgaactaggacttc 84  Q
    |||||| |||||||||||  ||||| |||||||||||||||||||    
T  32251415 tccgacttaacaatttcggcattttgccagttgaactaggacttc 32251459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 40 - 84
Target Start/End: Complemental strand, 38397530 - 38397486
Alignment:
Q  40 tccgacctaacaatttcgatattttaccagttgaactaggacttc 84  Q
    ||||| ||||||||||| | ||||||||| |||||||||||||||    
T  38397530 tccgatctaacaatttcaacattttaccaattgaactaggacttc 38397486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 40 - 84
Target Start/End: Complemental strand, 41862835 - 41862791
Alignment:
Q  40 tccgacctaacaatttcgatattttaccagttgaactaggacttc 84  Q
    ||||||||||||||||||| ||||| ||| || ||||||||||||    
T  41862835 tccgacctaacaatttcgacattttgccaattaaactaggacttc 41862791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 16 - 84
Target Start/End: Complemental strand, 48612589 - 48612521
Alignment:
Q  16 ggggttcgaacctccgtcaaagcgtccgacctaacaatttcgatattttaccagttgaactaggacttc 84  Q
    |||||||||||| | ||||  || |||| |||||||||||||  ||||| |||||||| ||||||||||    
T  48612589 ggggttcgaaccccggtcatggcatccggcctaacaatttcggcattttgccagttgagctaggacttc 48612521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0778 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0778
Description:

Target: scaffold0778; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 905 - 822
Alignment:
Q  1 acaagtggaggggcgggggttcgaacctccgtcaaagcgtccgacctaacaatttcgatattttaccagttgaactaggacttc 84  Q
    |||||||||||  | |||||||||||| | ||||  || |||| |||||||||||||| ||||| |||||||| ||||||||||    
T  905 acaagtggaggcaccggggttcgaaccccggtcatggcatccggcctaacaatttcgacattttgccagttgagctaggacttc 822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 39354 - 39437
Alignment:
Q  1 acaagtggaggggcgggggttcgaacctccgtcaaagcgtccgacctaacaatttcgatattttaccagttgaactaggacttc 84  Q
    |||||||||||  | |||||||||||| | ||||  || |||| |||||||||||||  |||||||||||||| ||||||||||    
T  39354 acaagtggaggtaccggggttcgaaccccggtcatggcatccggcctaacaatttcggcattttaccagttgagctaggacttc 39437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000004; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 49882750 - 49882833
Alignment:
Q  1 acaagtggaggggcgggggttcgaacctccgtcaaagcgtccgacctaacaatttcgatattttaccagttgaactaggacttc 84  Q
    |||||||||||  | |||||||||||||| ||||  || |||| |||||||||||||  ||||| |||||||| ||||||||||    
T  49882750 acaagtggaggtaccggggttcgaacctcggtcatggcatccggcctaacaatttcggcattttgccagttgagctaggacttc 49882833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 13632177 - 13632093
Alignment:
Q  1 acaagtggaggggcgggggttcgaacctccgtcaaagcgtccgacctaacaatttcgata-ttttaccagttgaactaggacttc 84  Q
    |||||||||||  | |||||||||||||| ||||  || |||| |||||||||||||| | |||| |||||||| ||||||||||    
T  13632177 acaagtggaggtactggggttcgaacctcggtcatggcatccggcctaacaatttcgacatttttgccagttgagctaggacttc 13632093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 40 - 80
Target Start/End: Complemental strand, 29334543 - 29334503
Alignment:
Q  40 tccgacctaacaatttcgatattttaccagttgaactagga 80  Q
    |||||||||||||||||| |||||| |||||||||||||||    
T  29334543 tccgacctaacaatttcggtattttgccagttgaactagga 29334503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 12821252 - 12821169
Alignment:
Q  1 acaagtggaggggcgggggttcgaacctccgtcaaagcgtccgacctaacaatttcgatattttaccagttgaactaggacttc 84  Q
    |||||||||||  | |||||||||||| | ||||  || |||| |||||||||||||  ||||| |||||||| ||||||||||    
T  12821252 acaagtggaggtaccggggttcgaaccccggtcatggcatccggcctaacaatttcggcattttgccagttgagctaggacttc 12821169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 40 - 83
Target Start/End: Complemental strand, 24407545 - 24407502
Alignment:
Q  40 tccgacctaacaatttcgatattttaccagttgaactaggactt 83  Q
    ||||||||||||||||||| ||||| |||||||| |||||||||    
T  24407545 tccgacctaacaatttcgacattttgccagttgagctaggactt 24407502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 24712175 - 24712092
Alignment:
Q  1 acaagtggaggggcgggggttcgaacctccgtcaaagcgtccgacctaacaatttcgatattttaccagttgaactaggacttc 84  Q
    |||||||||||  | |||||||||||| | ||||   | ||||||||||||||||||  ||||| |||||||| ||||||||||    
T  24712175 acaagtggaggtaccggggttcgaaccccggtcatgacatccgacctaacaatttcggcattttgccagttgagctaggacttc 24712092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 16 - 83
Target Start/End: Complemental strand, 28033264 - 28033197
Alignment:
Q  16 ggggttcgaacctccgtcaaagcgtccgacctaacaatttcgatattttaccagttgaactaggactt 83  Q
    |||||||||||| | ||||  || |||| |||||||||||||  |||||||||||||| |||||||||    
T  28033264 ggggttcgaaccccggtcatggcatccggcctaacaatttcggcattttaccagttgagctaggactt 28033197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 40 - 83
Target Start/End: Original strand, 31435998 - 31436041
Alignment:
Q  40 tccgacctaacaatttcgatattttaccagttgaactaggactt 83  Q
    |||| |||||||||||||  ||||||||||||||||||||||||    
T  31435998 tccggcctaacaatttcggcattttaccagttgaactaggactt 31436041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 35828361 - 35828278
Alignment:
Q  1 acaagtggaggggcgggggttcgaacctccgtcaaagcgtccgacctaacaatttcgatattttaccagttgaactaggacttc 84  Q
    |||||||||||  | |||||||||||| | ||||  || |||| |||||||||||||  ||||| |||||||| ||||||||||    
T  35828361 acaagtggaggtaccggggttcgaaccccggtcatggcatccggcctaacaatttcggcattttgccagttgagctaggacttc 35828278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 47462077 - 47462160
Alignment:
Q  1 acaagtggaggggcgggggttcgaacctccgtcaaagcgtccgacctaacaatttcgatattttaccagttgaactaggacttc 84  Q
    |||||||||||  | |||||||||||| | ||||  || |||| |||||||||||||  ||||| |||||||| ||||||||||    
T  47462077 acaagtggaggtaccggggttcgaaccccggtcatggcatccggcctaacaatttcggcattttgccagttgagctaggacttc 47462160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 43 - 84
Target Start/End: Complemental strand, 1083553 - 1083512
Alignment:
Q  43 gacctaacaatttcgatattttaccagttgaactaggacttc 84  Q
    |||||||||||||||  ||||| |||||||||||||||||||    
T  1083553 gacctaacaatttcggcattttgccagttgaactaggacttc 1083512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 42 - 83
Target Start/End: Original strand, 17815224 - 17815265
Alignment:
Q  42 cgacctaacaatttcgatattttaccagttgaactaggactt 83  Q
    ||||||||||||||||  ||||| ||||||||||||||||||    
T  17815224 cgacctaacaatttcggcattttgccagttgaactaggactt 17815265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 19 - 84
Target Start/End: Original strand, 28187223 - 28187288
Alignment:
Q  19 gttcgaacctccgtcaaagcgtccgacctaacaatttcgatattttaccagttgaactaggacttc 84  Q
    ||||||||| |  ||| ||| |||| |||||||||||||| |||||| ||||||| ||||||||||    
T  28187223 gttcgaaccccgatcatagcatccggcctaacaatttcgacattttatcagttgagctaggacttc 28187288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 40 - 84
Target Start/End: Original strand, 3084322 - 3084366
Alignment:
Q  40 tccgacctaacaatttcgatattttaccagttgaactaggacttc 84  Q
    ||||||||||||||||||  ||||| |||||||| ||||||||||    
T  3084322 tccgacctaacaatttcggcattttgccagttgagctaggacttc 3084366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 40 - 84
Target Start/End: Complemental strand, 29428103 - 29428059
Alignment:
Q  40 tccgacctaacaatttcgatattttaccagttgaactaggacttc 84  Q
    |||| ||||||||||||| |||||| |||||||| ||||||||||    
T  29428103 tccggcctaacaatttcggtattttgccagttgagctaggacttc 29428059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 45 - 77
Target Start/End: Complemental strand, 41049084 - 41049052
Alignment:
Q  45 cctaacaatttcgatattttaccagttgaacta 77  Q
    ||||||||||||||||||||| |||||||||||    
T  41049084 cctaacaatttcgatattttatcagttgaacta 41049052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 40 - 84
Target Start/End: Complemental strand, 42116529 - 42116485
Alignment:
Q  40 tccgacctaacaatttcgatattttaccagttgaactaggacttc 84  Q
    |||||||||| |||||||| |||||||||||||| ||||| ||||    
T  42116529 tccgacctaaaaatttcgacattttaccagttgagctagggcttc 42116485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0122 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0122
Description:

Target: scaffold0122; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 40 - 84
Target Start/End: Original strand, 15676 - 15720
Alignment:
Q  40 tccgacctaacaatttcgatattttaccagttgaactaggacttc 84  Q
    ||||||||||||||||||  ||||| |||||||||||||||||||    
T  15676 tccgacctaacaatttcggcattttgccagttgaactaggacttc 15720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0432 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0432
Description:

Target: scaffold0432; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 9454 - 9371
Alignment:
Q  1 acaagtggaggggcgggggttcgaacctccgtcaaagcgtccgacctaacaatttcgatattttaccagttgaactaggacttc 84  Q
    |||||||||||  | |||||||||||| | ||||  || |||| |||||||||||||  ||||| |||||||| ||||||||||    
T  9454 acaagtggaggcaccggggttcgaaccccggtcatggcatccggcctaacaatttcggcattttgccagttgagctaggacttc 9371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0402 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0402
Description:

Target: scaffold0402; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 1282 - 1365
Alignment:
Q  1 acaagtggaggggcgggggttcgaacctccgtcaaagcgtccgacctaacaatttcgatattttaccagttgaactaggacttc 84  Q
    |||||||||||  | |||||||||||| | ||||  || |||| |||||||||||||  ||||| |||||||| ||||||||||    
T  1282 acaagtggaggtaccggggttcgaaccccggtcatggcatccggcctaacaatttcggcattttgccagttgagctaggacttc 1365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0633 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0633
Description:

Target: scaffold0633; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 38 - 83
Target Start/End: Original strand, 3873 - 3918
Alignment:
Q  38 cgtccgacctaacaatttcgatattttaccagttgaactaggactt 83  Q
    ||||| ||||||||||||||  |||||||||||||| |||||||||    
T  3873 cgtccaacctaacaatttcggcattttaccagttgagctaggactt 3918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University