View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13915_high_10 (Length: 336)
Name: NF13915_high_10
Description: NF13915
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13915_high_10 |
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Alignment Details
Target: chr3 (Bit Score: 302; Significance: 1e-170; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 12 - 321
Target Start/End: Original strand, 46263954 - 46264263
Alignment:
| Q |
12 |
aagaagataaagaaactagagttagaggattgagtaaacaatatgggctgaaatacaattttacataataccaattctaacatctttatgagaaaggcat |
111 |
Q |
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| T |
46263954 |
aagaagataaagaaactagagttagaggattgaataaacaatatgggctgaaatacaattttacataataccaattctaacatctttatgagaaaggcat |
46264053 |
T |
|
| Q |
112 |
ctcttgaaatataggatatgtaaaagaagatttaagtaccttaagtgtgaaagcccgtccctcatgaccatcgggaaactgtacagtcaaaagtttctta |
211 |
Q |
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| T |
46264054 |
ctcttgaaatataggatatgtaaaagaagatttaagtaccttaagtgtgaaagcccgtccctcatgaccatcgggaaactgtacagtcaaaagtttctta |
46264153 |
T |
|
| Q |
212 |
tctgctttaacaataacactacaaaatttaaacaacacaagttacaagaagtaatgaaagtgaaaggtcccaatcccgcaaatgatagtaacgtgtagtt |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
46264154 |
tctgctttaacaataacactacaaaatttaaacaacacaagttacaagaagtaatgaaagtgaaaggtcccaatcccgcaaatgatagtaacttgtagtt |
46264253 |
T |
|
| Q |
312 |
gagggaaaac |
321 |
Q |
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|||||||||| |
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| T |
46264254 |
gagggaaaac |
46264263 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 149 - 240
Target Start/End: Complemental strand, 27774927 - 27774836
Alignment:
| Q |
149 |
accttaagtgtgaaagcccgtccctcatgaccatcgggaaactgtacagtcaaaagtttcttatctgctttaacaataacactacaaaattt |
240 |
Q |
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| T |
27774927 |
accttaagtgttaatactcgtccatcatgaacattgggaaattgtacagtcaaaagtttcttatctgctttgatagaaacactacaaaattt |
27774836 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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