View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13915_high_19 (Length: 232)
Name: NF13915_high_19
Description: NF13915
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13915_high_19 |
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Alignment Details
Target: chr4 (Bit Score: 158; Significance: 3e-84; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 1 - 170
Target Start/End: Original strand, 9542003 - 9542172
Alignment:
| Q |
1 |
aagttccaaatgaaaattcctttgagaaatgtttgcatggtcttaatagttccaaatgaaatttgacatattaaggttattaaaagttctcaatcttttg |
100 |
Q |
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| T |
9542003 |
aagttccaaatgaaaattcctttgagaaatgtttgcatggtcttaaaagttccaaatgaaatttgacatattaaggttattaaaagttctcaatcttttc |
9542102 |
T |
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| Q |
101 |
cgtggaaaataagaaaagagataggtcaatgttttttaattgtgctctcaaatgaaatttgttgtttctc |
170 |
Q |
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| T |
9542103 |
cgtggaaaataagaaaggagataggtcaatgttttttaattgtgctctcaaatgaaatttgttgtttctc |
9542172 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 11 - 61
Target Start/End: Original strand, 9541967 - 9542017
Alignment:
| Q |
11 |
tgaaaattcctttgagaaatgtttgcatggtcttaatagttccaaatgaaa |
61 |
Q |
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| T |
9541967 |
tgaaaattcctttgagaaatgtttgcatggtcttaaaagttccaaatgaaa |
9542017 |
T |
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