View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13915_high_5 (Length: 479)
Name: NF13915_high_5
Description: NF13915
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13915_high_5 |
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Alignment Details
Target: chr5 (Bit Score: 274; Significance: 1e-153; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 151 - 477
Target Start/End: Original strand, 10047730 - 10048062
Alignment:
| Q |
151 |
aaagagttaatcacgccaacatattgagccgagccaaagcaaaattatgtactcggctgtatga------agtcacgtgacaagaattcggtgtatggtc |
244 |
Q |
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| T |
10047730 |
aaagagttaatcacgccaacatattgagccgagccaaagcaaaattatgtactcggctgtatgattggtgagtcacgtgacaaggattcggtgtatggtc |
10047829 |
T |
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| Q |
245 |
ctacaccagcagtatatagtttctaggtagggagatgatatcatgtctgtgtatctgcaggacaatctaagtagaattcagtgccataaatatttatccc |
344 |
Q |
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| T |
10047830 |
ctataccagcagtatatagtttctaggtagggagatgatatcatgtctgtgtatctgcaggacaatgtaagtagaattcagtgccataaatatttatccc |
10047929 |
T |
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| Q |
345 |
agttcgtctgatttctcaattgattctttacctctaatgttttcttgtaaatcttgcgttcttttgtttaaaatcaaattacagtagagaacatatttgt |
444 |
Q |
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| T |
10047930 |
agtgtgtctgatttctcaattgattctttacctctaatgttttcttgtaaatcttgcgttcttttgtttaaaatcaaattacagtagagaacatatttgt |
10048029 |
T |
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| Q |
445 |
catcacatccatgttttagggcctatgctactc |
477 |
Q |
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| T |
10048030 |
catcacatgcatgttttaggtcccatgttactc |
10048062 |
T |
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