View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13915_high_7 (Length: 431)
Name: NF13915_high_7
Description: NF13915
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13915_high_7 |
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Alignment Details
Target: chr4 (Bit Score: 238; Significance: 1e-131; HSPs: 10)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 128 - 405
Target Start/End: Complemental strand, 51111980 - 51111703
Alignment:
| Q |
128 |
ccaaagattatgcgggtgatgctacagaaaagacaagagaatatgccaatgctgcagcatacaagtctaaagactatgcaggtgatgctgctcaaaaaac |
227 |
Q |
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| T |
51111980 |
ccaaagattatgcaggtgatgctgctcacaatactagagagtatgccaatgatgcagcatacaaatctaaagactatgcaggtgatgctgctcaaaaaac |
51111881 |
T |
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| Q |
228 |
caaagaggcttctgaatatgccaatgacaccactcagaagacagcaaagtatggagctgatactgctcagaaaaccaaaaataaaatccaagacgttgca |
327 |
Q |
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| T |
51111880 |
caaagaggcttctgaatatgccaatgacaccactcagaagacagcaaagtatggagctgatactgctcagaaaaccaaaaataaaatccaagacgttgca |
51111781 |
T |
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| Q |
328 |
tctggtttgtactgttcaaactctaattttgttactaacatttctagtatgcgcatggtaatatagggaagaaagaaa |
405 |
Q |
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| T |
51111780 |
tctggtttgtactgttcaaactctaattttgttactaacatttctagtatgcgcatggtaatatagggaagaaagaaa |
51111703 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 9 - 218
Target Start/End: Complemental strand, 51112252 - 51112043
Alignment:
| Q |
9 |
agcagagaagaccaaagattatggaagtgatgctgcacagaaggccaaagatgcagcatacaagactaaagactatgctggtgatgctgctgagaagacc |
108 |
Q |
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| T |
51112252 |
agcagagaagaccaaagattatggaagtgatgctgcacagaaggcaaaagatgcagcatacaagactaaagactatgctggtgatgctgccgagaagacc |
51112153 |
T |
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| Q |
109 |
aaagatgcagcacacaagaccaaagattatgcgggtgatgctacagaaaagacaagagaatatgccaatgctgcagcatacaagtctaaagactatgcag |
208 |
Q |
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| T |
51112152 |
aaagatgcagcatacaagaccaaagattatgcgggtgatgctacagaaaagacaagagaatatgccaatgctgcagcatacaagtctaaagactatgcag |
51112053 |
T |
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| Q |
209 |
gtgatgctgc |
218 |
Q |
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| T |
51112052 |
gtgatgctgc |
51112043 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 58 - 149
Target Start/End: Complemental strand, 51112344 - 51112253
Alignment:
| Q |
58 |
gatgcagcatacaagactaaagactatgctggtgatgctgctgagaagaccaaagatgcagcacacaagaccaaagattatgcgggtgatgc |
149 |
Q |
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| T |
51112344 |
gatgcagcatacaagtctaaagagtatgctggtgatgctgcacagatggccaaagatgcagcatacaagaccaaagattatgcaggtgatgc |
51112253 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 60 - 146
Target Start/End: Complemental strand, 51112081 - 51111995
Alignment:
| Q |
60 |
tgcagcatacaagactaaagactatgctggtgatgctgctgagaagaccaaagatgcagcacacaagaccaaagattatgcgggtga |
146 |
Q |
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| T |
51112081 |
tgcagcatacaagtctaaagactatgcaggtgatgctgcagagaagaccaaagatgcagcatataagaccaaagactatgctggtga |
51111995 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 35 - 114
Target Start/End: Complemental strand, 51112313 - 51112234
Alignment:
| Q |
35 |
gtgatgctgcacagaaggccaaagatgcagcatacaagactaaagactatgctggtgatgctgctgagaagaccaaagat |
114 |
Q |
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| T |
51112313 |
gtgatgctgcacagatggccaaagatgcagcatacaagaccaaagattatgcaggtgatgcagcagagaagaccaaagat |
51112234 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 22 - 98
Target Start/End: Complemental strand, 51112065 - 51111989
Alignment:
| Q |
22 |
aaagattatggaagtgatgctgcacagaaggccaaagatgcagcatacaagactaaagactatgctggtgatgctgc |
98 |
Q |
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| T |
51112065 |
aaagactatgcaggtgatgctgcagagaagaccaaagatgcagcatataagaccaaagactatgctggtgaagctgc |
51111989 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 165 - 234
Target Start/End: Complemental strand, 51112522 - 51112453
Alignment:
| Q |
165 |
agaatatgccaatgctgcagcatacaagtctaaagactatgcaggtgatgctgctcaaaaaaccaaagag |
234 |
Q |
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| T |
51112522 |
agaatatgccactggtgcagcgcacaagtccaaagagtatgcaggtgatgctgcacaaaaaaccaaagag |
51112453 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 112 - 218
Target Start/End: Complemental strand, 51112410 - 51112304
Alignment:
| Q |
112 |
gatgcagcacacaagaccaaagattatgcgggtgatgctacagaaaagacaagagaatatgccaatgctgcagcatacaagtctaaagactatgcaggtg |
211 |
Q |
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||||| ||||| || |||||||| ||||| |||| |||||| | |||| | ||| ||||| | || ||||||||||||||||||||| ||||| |||| |
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| T |
51112410 |
gatgctgcacagaaaaccaaagactatgctggtggtgctactcagaagagcaaagagtatgcaactgatgcagcatacaagtctaaagagtatgctggtg |
51112311 |
T |
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| Q |
212 |
atgctgc |
218 |
Q |
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| T |
51112310 |
atgctgc |
51112304 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 52 - 113
Target Start/End: Complemental strand, 51111936 - 51111875
Alignment:
| Q |
52 |
gccaaagatgcagcatacaagactaaagactatgctggtgatgctgctgagaagaccaaaga |
113 |
Q |
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||||| |||||||||||||| ||||||||||||| |||||||||||| | || |||||||| |
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| T |
51111936 |
gccaatgatgcagcatacaaatctaaagactatgcaggtgatgctgctcaaaaaaccaaaga |
51111875 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 58 - 150
Target Start/End: Complemental strand, 51112257 - 51112165
Alignment:
| Q |
58 |
gatgcagcatacaagactaaagactatgctggtgatgctgctgagaagaccaaagatgcagcacacaagaccaaagattatgcgggtgatgct |
150 |
Q |
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||||||||| | ||||| ||||| |||| |||||||||| ||||| | |||||||||||| ||||||| ||||| ||||| ||||||||| |
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| T |
51112257 |
gatgcagcagagaagaccaaagattatggaagtgatgctgcacagaaggcaaaagatgcagcatacaagactaaagactatgctggtgatgct |
51112165 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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