View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13915_high_9 (Length: 389)
Name: NF13915_high_9
Description: NF13915
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13915_high_9 |
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Alignment Details
Target: chr1 (Bit Score: 214; Significance: 1e-117; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 141 - 374
Target Start/End: Complemental strand, 4234556 - 4234324
Alignment:
| Q |
141 |
ttaatccaattattccatacgggcaagcttctgaattttatttgttgcagacaaagcaccccttatcaggcatagtcaccactctcattaggcctttttc |
240 |
Q |
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| T |
4234556 |
ttaatacaatttttccatacgggcaagcttctgaattttatttgttgcagacaaagcaccccc-atcaggcatagtcaccactctcattaggcctttttc |
4234458 |
T |
|
| Q |
241 |
ccaaagtcttgcttgtgggagtatccaccgagtcattagcattgatgtcatctttggtcgaacaaactccttcaacaatatcctataaatacaataaaat |
340 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4234457 |
ccaaagtcttgcttgtgggagtatccaccgagtcattagcattgatgtcatctttggtcgaacaaactccttcaacaatatcctataaatacaataaaat |
4234358 |
T |
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| Q |
341 |
atcaaatgattaatatagtgaaaaaagcatttaa |
374 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
4234357 |
atcaaatgattaatatagtgaaaaaagcatttaa |
4234324 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 6 - 75
Target Start/End: Complemental strand, 4234693 - 4234624
Alignment:
| Q |
6 |
aagaatatggccacaaaaaataatgtttcacattgcaataaagcatagtaaaactgagttcaatacgaca |
75 |
Q |
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| T |
4234693 |
aagaaaatggtcacaaaaaataatgtttcacatcgcaataaagcatagtaaaactcagttcaatacgaca |
4234624 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 185; Significance: 1e-100; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 141 - 374
Target Start/End: Original strand, 36513282 - 36513519
Alignment:
| Q |
141 |
ttaatccaattattccatacgggcaagcttctgaattttatttgttgcagacaaagcaccccttatcaggcatagtcaccactctcattaggcctttttc |
240 |
Q |
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||||||||||| |||||||| |||||||||||||||||||||||||||||||||| |||||| ||||| |||||||||||||||||||||||||||||| |
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| T |
36513282 |
ttaatccaatttttccatactggcaagcttctgaattttatttgttgcagacaaaccaccccc-atcag-catagtcaccactctcattaggcctttttc |
36513379 |
T |
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| Q |
241 |
ccaaagtcttgcttgtgggagt------atccaccgagtcattagcattgatgtcatctttggtcgaacaaactccttcaacaatatcctataaatacaa |
334 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36513380 |
ccaaagtcttgcttgtgggagtatgagtatccaccgagtcattagcattgatgtcatctttggtcgaacaaactccttcaacaatatcctataaatacaa |
36513479 |
T |
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| Q |
335 |
taaaatatcaaatgattaatatagtgaaaaaagcatttaa |
374 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
36513480 |
taaaatatcaaatgattaatatagtgaaaaaagcatttaa |
36513519 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 22 - 62
Target Start/End: Original strand, 36513123 - 36513163
Alignment:
| Q |
22 |
aaaataatgtttcacattgcaataaagcatagtaaaactga |
62 |
Q |
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| T |
36513123 |
aaaataatgtttcacatcgcaataaagcatagtaaaactga |
36513163 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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