View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13915_low_1 (Length: 713)

Name: NF13915_low_1
Description: NF13915
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13915_low_1
NF13915_low_1
[»] chr3 (1 HSPs)
chr3 (15-643)||(51727903-51728513)


Alignment Details
Target: chr3 (Bit Score: 498; Significance: 0; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 498; E-Value: 0
Query Start/End: Original strand, 15 - 643
Target Start/End: Original strand, 51727903 - 51728513
Alignment:
Q  15 ttgaaagctcgtgaacaatgtatcttcgagtagatatgtatttttactatttttgacaaagctcgtgaacagcatttgtcctctaagcttggatttctag 114  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  51727903 ttgaaagctcgtgaacaatgtatcttggagtagatatgtatttttactatttttgacaaagctcgtgaacagcatttgtcctctaagctaggatttctag 51728002  T
Q  115 acaaatcgatgtagatttgttaaacttggatatttatttattttttactaaaaaccgaaccattaaattaaactccctgtccaagtaatggatatggaag 214  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     | |||||||||||||||||||||||| |    
T  51728003 acaaatcgatgtagatttgttaaacttggatatttatttattttttactaaaaaccgaaccattaaa-----ccccctgtccaagtaatggatatggagg 51728097  T
Q  215 gattaactgtgaaccaaaatgaatgatagagtagagttgaggtaaatatagaaaattgatgacagtagtacattgaatttaacacacgtaggtgagaaag 314  Q
    |||||||||||||||||||||||||||||||      ||||||||||||||||||||||   ||||||||||||||||||||||||||||||| |||||     
T  51728098 gattaactgtgaaccaaaatgaatgatagaga-----tgaggtaaatatagaaaattga---cagtagtacattgaatttaacacacgtaggttagaaa- 51728188  T
Q  315 nnnnnnnnnnntggttggaattccaaccaaaatgggacatgcaattggagattggttcaacccacactatgcattctcaattccaattttgttacattct 414  Q
               | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51728189 ----aaaaaattcgttggaattccaaccaaaatgggacatgcaattggagattggttcaacccacactatgcattctcaattccaattttgttacattct 51728284  T
Q  415 cataataattagaatagaaccccttccagattttcattttttcctttcagaatttctaatcaaattcattattgctgagttttgttcgaatgttgaatct 514  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51728285 cataataattagaatagaaccccttccagattttcattttttcctttcataatttctaatcaaattcattattgctgagttttgttcgaatgttgaatct 51728384  T
Q  515 taaaaaggttgcccaatgtgatgtaatgtaatgttggaaactgttcaggaaattgccgtatatcttcatagatttcacaatcttgatctctttaagcaag 614  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51728385 taaaaaggttgctcaatgtgatgtaatgtaatgttggaaactgttcaggaaattgccgtatatcttcatagatttcacaatcttgatctctttaagcaag 51728484  T
Q  615 ggtgggtatatatatacattcattcatca 643  Q
    |||||||||||||||||||||||||||||    
T  51728485 ggtgggtatatatatacattcattcatca 51728513  T

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