View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13915_low_13 (Length: 295)
Name: NF13915_low_13
Description: NF13915
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13915_low_13 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 208; Significance: 1e-114; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 46 - 285
Target Start/End: Complemental strand, 34819910 - 34819671
Alignment:
| Q |
46 |
caactcgctgaggcgtctcctttaaagaagaaagggaagagttatgaaggcgaggccaacaagaagaaggtcgagtgcgttcttgaggttgagatcggcg |
145 |
Q |
| |
|
||||||| |||||| | ||||||||||||||||||||||||| || |||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
34819910 |
caactcgttgaggcatgtcctttaaagaagaaagggaagagtgataaaggcgaggccaacaagaagaatgtcgagtgcgttcttgaggttgagatcggcg |
34819811 |
T |
|
| Q |
146 |
gctccttgtggaacaggaacttcgatcgtgctggcttcgtgaaggatcatttcaacctttatgaagattttgacgtaacaaggaagtctaatcactccaa |
245 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||| |
|
|
| T |
34819810 |
gctccttgtggaacaggaacttcgatcgtgctggcttcgtgaaggatcatttcaacctttatgaagattttgaggcaacaaggaagtctaatcactccaa |
34819711 |
T |
|
| Q |
246 |
tatgtttcatgatgctagtgtttcttgtttgcgctctgtg |
285 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34819710 |
tatgtttcatgatgctagtgtttcttgtttgcgctctgtg |
34819671 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 46 - 113
Target Start/End: Complemental strand, 34820186 - 34820119
Alignment:
| Q |
46 |
caactcgctgaggcgtctcctttaaagaagaaagggaagagttatgaaggcgaggccaacaagaagaa |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| || |||||||| | | ||||||||| |
|
|
| T |
34820186 |
caactcgctgaggcgtctcctttaaagaagaaagggaagagtgataaaggcgagacaaccaagaagaa |
34820119 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 176 - 239
Target Start/End: Complemental strand, 22080743 - 22080680
Alignment:
| Q |
176 |
ctggcttcgtgaaggatcatttcaacctttatgaagattttgacgtaacaaggaagtctaatca |
239 |
Q |
| |
|
||||||||||||| ||||||||||||||| ||| |||||||| | | | |||||||||||||| |
|
|
| T |
22080743 |
ctggcttcgtgaaagatcatttcaaccttcctgaggattttgaggcagcgaggaagtctaatca |
22080680 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University