View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13915_low_2 (Length: 704)
Name: NF13915_low_2
Description: NF13915
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13915_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 497; Significance: 0; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 497; E-Value: 0
Query Start/End: Original strand, 26 - 607
Target Start/End: Original strand, 10887187 - 10887768
Alignment:
| Q |
26 |
attgcagtgctgtgaaagtcatatttaatttaaatgacacaatggtcacaaaagctttgggaaaatttcgcttgaaaaaattgtcacttactaatctacc |
125 |
Q |
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| T |
10887187 |
attgcagtgctgtgaaagtcatatttaatttaaatgacacaatggtcacaaaagctttgggaaaatttcgcttgaaaaaattgttactttataatctacc |
10887286 |
T |
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| Q |
126 |
aatcctggagcatgtatgggacaaagaccctgaaggaannnnnnnccttcaagtgctacaagaaatgagtgttatgggatgtgataaccttaaatacttg |
225 |
Q |
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| T |
10887287 |
aatcctggagcatgtatgggacaaagaccctgaaggaatttttttccttcaagtactacaagaaatgagtgttacagaatgtgataaccttaaatacttg |
10887386 |
T |
|
| Q |
226 |
tttcctgcttcggtggctaaagatcttactagactcgaggtgcttagtgcagcgtactgtgaggagctggtagaaatattttcgaaggatgaaatacctg |
325 |
Q |
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| T |
10887387 |
tttcctgcttcggtggctaaagatcttactagactcaaggtgcttagtgcaacgaactgtgaggagctggtagaaatattttcgaaggatgaaatacctg |
10887486 |
T |
|
| Q |
326 |
cagaaggagaaataaaagagtttcctcaactgaccacaatgcgcctaataaaattgccaaggctcaaatacttttatcctcgtctacataagctagaatg |
425 |
Q |
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| T |
10887487 |
cagaaggagaaataaaagagtttcctcaactgaccacaatgcacctaataaacttgccaaggctcaaatacttttatcctcgtctacataagctagaatg |
10887586 |
T |
|
| Q |
426 |
gcctgcactaaaagagctgtatgcacatcattgtaacttgacgatactcaaatgtcgagaagatcatccagaggaccaagcccttattccaattgaaaag |
525 |
Q |
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| T |
10887587 |
gcctgcactaaaagagctgcatgcacatccttgtaacttgacgatactcaaatgtcgagaagatcatccagaggaccaagcccttattccaattgaaaag |
10887686 |
T |
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| Q |
526 |
gtacttcatacaacttggtctatcaggcagttaaaaacagtttcacgtgccccagataataatacaaagtatacctaaccta |
607 |
Q |
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| T |
10887687 |
gtacttcatacaacttggtgtataaggcagttaaaaacagtttcacgtgccccagataataatacaaagtatacctaaccta |
10887768 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 28 - 528
Target Start/End: Original strand, 10855031 - 10855537
Alignment:
| Q |
28 |
tgcagtgctgtgaaagtcatatttaatttaaatgacacaatggtcacaaaagctttgggaaaatttcgcttgaaaaaattgtcacttactaatctaccaa |
127 |
Q |
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||||||||||||||||||||||||||| ||||||| ||| || ||||||||| |||||| |||||||||||||||||||| || || ||||||||| |
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| T |
10855031 |
tgcagtgctgtgaaagtcatatttaatataaatgatgcaagggccacaaaagcaatgggaacatttcgcttgaaaaaattgtttttttctgatctaccaa |
10855130 |
T |
|
| Q |
128 |
tcctggagcatgtatgggacaaagaccctgaaggaannnnnnnccttcaagtgctacaagaaatgagtgttatgggatgtgataaccttaaatacttgtt |
227 |
Q |
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| T |
10855131 |
tcctggagcatgtatgggacaaagaccctgaaggaaatttttgccttcaagtgctacaagaaatgaatgtttttgaatgtgatacccttaaatatttgtt |
10855230 |
T |
|
| Q |
228 |
tcctgcttcggtggctaaagatcttactagactcgaggtgcttagtgcagcgtactgtgaggagctggtagaaatattttcgaaggatgaaatacctgca |
327 |
Q |
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|||||| |||||||||||||||||||||||||| ||| ||||||| | | | |||| | ||| |||||||||||||||| ||||||||||||||||| |
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| T |
10855231 |
tcctgcatcggtggctaaagatcttactagacttgagctgcttagagtaacacgctgtaaagagttggtagaaatattttcagaggatgaaatacctgca |
10855330 |
T |
|
| Q |
328 |
gaaggagaaataaaaga------gtttcctcaactgaccacaatgcgcctaataaaattgccaaggctcaaatacttttatcctcgtctacataagctag |
421 |
Q |
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| T |
10855331 |
gaaggagcaacaaaagagttaatgtttccttctctgacctcattgtacataataaaattgccagcgctcaaatacttttatcgtggtttacataagctag |
10855430 |
T |
|
| Q |
422 |
aatggcctgcactaaaagagctgtatgcacatcattgtaacttgacgatactcaaatgtcgagaagatcatccagaggaccaagcccttattccaattga |
521 |
Q |
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||||||| |||||||| || ||||| ||| |||||||| ||||||| |||||| |||||||||||||||||| ||||||||| ||||| |||| |
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| T |
10855431 |
aatggcccatgctaaaagaattgcatgcatatcggtgtaacttagtgatactcgaatgtcaagaagatcatccagaggagcaagcccttgttccagttga |
10855530 |
T |
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| Q |
522 |
aaaggta |
528 |
Q |
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| T |
10855531 |
aaaggta |
10855537 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 103; E-Value: 7e-51
Query Start/End: Original strand, 602 - 704
Target Start/End: Original strand, 10887786 - 10887888
Alignment:
| Q |
602 |
aacctataaatgtatctatcactggaatctattcctatttttattcaattgatgatatttaaacaataaatttaattcctaaagctcatcagtcgtcact |
701 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10887786 |
aacctataaatgtatctatcactggaatctattcctatttttattcaattgatgatatttaaacaataaatttaattcctaaagctcatcagtcgtcact |
10887885 |
T |
|
| Q |
702 |
atc |
704 |
Q |
| |
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||| |
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| T |
10887886 |
atc |
10887888 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 639 - 704
Target Start/End: Original strand, 10855881 - 10855946
Alignment:
| Q |
639 |
tttttattcaattgatgatatttaaacaataaatttaattcctaaagctcatcagtcgtcactatc |
704 |
Q |
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| T |
10855881 |
tttttatttaatggatgatatttaaacaattaatctaattcctaaagctcataagtcatcaatatc |
10855946 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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