View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13915_low_20 (Length: 208)

Name: NF13915_low_20
Description: NF13915
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13915_low_20
NF13915_low_20
[»] chr7 (14 HSPs)
chr7 (22-195)||(5080297-5080472)
chr7 (18-115)||(38761176-38761276)
chr7 (18-73)||(27508616-27508671)
chr7 (19-78)||(15272358-15272417)
chr7 (18-79)||(14197643-14197704)
chr7 (18-78)||(6441528-6441588)
chr7 (18-78)||(15000681-15000741)
chr7 (24-110)||(45013061-45013150)
chr7 (24-78)||(3404646-3404700)
chr7 (18-79)||(43257416-43257477)
chr7 (18-78)||(27508760-27508820)
chr7 (24-71)||(6441387-6441434)
chr7 (18-79)||(3404492-3404553)
chr7 (18-73)||(37787871-37787922)
[»] chr4 (22 HSPs)
chr4 (18-115)||(22018034-22018134)
chr4 (18-110)||(9826632-9826727)
chr4 (26-79)||(18830766-18830819)
chr4 (18-79)||(30471002-30471063)
chr4 (18-79)||(55382740-55382801)
chr4 (18-77)||(5448232-5448291)
chr4 (24-79)||(47943638-47943693)
chr4 (26-114)||(1387535-1387626)
chr4 (26-78)||(37694935-37694987)
chr4 (19-78)||(5448381-5448440)
chr4 (19-78)||(10757605-10757664)
chr4 (19-78)||(10970776-10970835)
chr4 (24-79)||(29908923-29908978)
chr4 (18-73)||(37695116-37695171)
chr4 (19-78)||(47463849-47463908)
chr4 (18-115)||(2634208-2634308)
chr4 (28-78)||(22017917-22017967)
chr4 (18-78)||(3370000-3370060)
chr4 (18-73)||(10380779-10380834)
chr4 (18-79)||(2232554-2232615)
chr4 (18-79)||(11821757-11821818)
chr4 (18-78)||(18836462-18836523)
[»] chr5 (16 HSPs)
chr5 (24-115)||(13753419-13753513)
chr5 (19-78)||(17497180-17497239)
chr5 (18-79)||(21943927-21943988)
chr5 (24-79)||(10760197-10760252)
chr5 (18-105)||(19491677-19491767)
chr5 (19-78)||(21211452-21211511)
chr5 (39-78)||(21211604-21211643)
chr5 (18-73)||(2555479-2555534)
chr5 (28-79)||(19564849-19564900)
chr5 (28-63)||(34419530-34419565)
chr5 (19-78)||(43548957-43549016)
chr5 (24-73)||(2555629-2555678)
chr5 (18-75)||(30100795-30100852)
chr5 (18-78)||(17497031-17497090)
chr5 (18-78)||(21943778-21943838)
chr5 (19-79)||(31912381-31912441)
[»] chr3 (22 HSPs)
chr3 (18-116)||(48755321-48755422)
chr3 (18-115)||(1426479-1426579)
chr3 (18-115)||(33343001-33343101)
chr3 (18-110)||(18445589-18445684)
chr3 (19-78)||(48755513-48755572)
chr3 (18-79)||(15031222-15031283)
chr3 (24-73)||(26498706-26498755)
chr3 (18-78)||(20759111-20759171)
chr3 (19-78)||(26498583-26498642)
chr3 (18-79)||(21514778-21514839)
chr3 (18-79)||(39541708-39541769)
chr3 (22-78)||(21514932-21514988)
chr3 (18-78)||(38498287-38498347)
chr3 (18-78)||(44967890-44967950)
chr3 (19-78)||(1426660-1426719)
chr3 (24-78)||(15005148-15005202)
chr3 (39-73)||(38498175-38498209)
chr3 (18-79)||(42453077-42453138)
chr3 (26-79)||(43562792-43562845)
chr3 (19-78)||(11989080-11989139)
chr3 (19-78)||(39541795-39541854)
chr3 (39-79)||(11989250-11989290)
[»] chr6 (14 HSPs)
chr6 (18-115)||(13536555-13536655)
chr6 (19-78)||(10587922-10587981)
chr6 (18-73)||(25089192-25089247)
chr6 (18-115)||(28752237-28752337)
chr6 (26-75)||(10672809-10672858)
chr6 (18-110)||(21222649-21222746)
chr6 (18-73)||(19295465-19295520)
chr6 (19-78)||(25089337-25089396)
chr6 (24-115)||(10588061-10588155)
chr6 (18-79)||(10862047-10862108)
chr6 (24-73)||(10862202-10862251)
chr6 (25-78)||(26705219-26705272)
chr6 (24-78)||(13536751-13536805)
chr6 (18-78)||(19295316-19295376)
[»] chr2 (6 HSPs)
chr2 (19-77)||(39598692-39598750)
chr2 (18-78)||(32092911-32092971)
chr2 (18-79)||(31819948-31820009)
chr2 (18-78)||(24006915-24006975)
chr2 (19-78)||(32092794-32092853)
chr2 (18-79)||(22092894-22092955)
[»] chr1 (11 HSPs)
chr1 (18-115)||(50335436-50335536)
chr1 (18-78)||(37608007-37608067)
chr1 (28-78)||(37608165-37608215)
chr1 (18-79)||(13735479-13735540)
chr1 (19-78)||(50335626-50335685)
chr1 (18-64)||(11633243-11633289)
chr1 (19-73)||(13735631-13735685)
chr1 (28-78)||(32374153-32374203)
chr1 (41-113)||(42847022-42847097)
chr1 (18-78)||(32374020-32374080)
chr1 (18-78)||(42847202-42847262)
[»] scaffold0024 (1 HSPs)
scaffold0024 (18-110)||(127804-127899)
[»] chr8 (18 HSPs)
chr8 (18-79)||(12107019-12107080)
chr8 (24-79)||(18324031-18324086)
chr8 (18-77)||(35202634-35202693)
chr8 (18-110)||(37543976-37544071)
chr8 (18-79)||(41358866-41358927)
chr8 (18-78)||(23976126-23976186)
chr8 (27-79)||(23976283-23976335)
chr8 (19-78)||(12106902-12106961)
chr8 (24-110)||(18324187-18324276)
chr8 (24-82)||(21124358-21124416)
chr8 (18-115)||(25149422-25149522)
chr8 (31-115)||(21184294-21184381)
chr8 (26-79)||(22469624-22469677)
chr8 (18-73)||(22426887-22426941)
chr8 (19-78)||(25149273-25149332)
chr8 (18-79)||(4289109-4289170)
chr8 (29-78)||(35202794-35202843)
chr8 (24-72)||(10289388-10289436)
[»] scaffold0026 (1 HSPs)
scaffold0026 (18-105)||(57454-57544)
[»] scaffold0047 (2 HSPs)
scaffold0047 (18-115)||(11601-11700)
scaffold0047 (39-73)||(11776-11810)
[»] scaffold0018 (1 HSPs)
scaffold0018 (26-79)||(71942-71995)
[»] scaffold0066 (1 HSPs)
scaffold0066 (18-78)||(15400-15460)
[»] scaffold0049 (1 HSPs)
scaffold0049 (18-78)||(59740-59800)
[»] scaffold0011 (1 HSPs)
scaffold0011 (19-78)||(190213-190272)
[»] scaffold0407 (2 HSPs)
scaffold0407 (24-78)||(871-924)
scaffold0407 (24-78)||(7335-7388)
[»] scaffold0102 (1 HSPs)
scaffold0102 (26-74)||(24084-24132)
[»] scaffold0003 (1 HSPs)
scaffold0003 (18-65)||(314126-314173)
[»] scaffold1300 (1 HSPs)
scaffold1300 (39-73)||(1397-1431)


Alignment Details
Target: chr7 (Bit Score: 99; Significance: 5e-49; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 22 - 195
Target Start/End: Original strand, 5080297 - 5080472
Alignment:
Q  22 atagtctacattcaggaactattttgcaatttatctgcattcagggactaaaatgacg---tctttcttattaagggaccaaagtgattaatctccccca 118  Q
    ||||| |||||||||  |||||||| |||||||||||||||||||||||||||| |||   |||||| |||| || ||| ||||||| |||| ||||| |    
T  5080297 atagtttacattcagagactattttacaatttatctgcattcagggactaaaataacgacttctttcctattcagagactaaagtgactaatttcccc-a 5080395  T
Q  119 tttaatttgtgattcattaaggcctttttcttccaactttataatagatgcctacacgatcctacaattttcatctc 195  Q
    |||| ||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||    
T  5080396 tttagtttgtgattcattaaggcctttttcttccaactttataataaatgcctacatgatcctacaattttcatctc 5080472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 18 - 115
Target Start/End: Original strand, 38761176 - 38761276
Alignment:
Q  18 taacatagtctacattcaggaactattttgcaatttatctgcattcagggactaaa---atgacgtctttcttattaagggaccaaagtgattaatctcc 114  Q
    ||||| |||||||||||||| |||||||||||||||||||||||||||||||||||   |||||   |||| |||| |||||| ||||||||||||||||    
T  38761176 taacaaagtctacattcagggactattttgcaatttatctgcattcagggactaaagtgatgactcatttcctattcagggactaaagtgattaatctcc 38761275  T
Q  115 c 115  Q
    |    
T  38761276 c 38761276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 18 - 73
Target Start/End: Complemental strand, 27508671 - 27508616
Alignment:
Q  18 taacatagtctacattcaggaactattttgcaatttatctgcattcagggactaaa 73  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  27508671 taacatagtctacattcagggactattttgcaatttatctgcattcagggactaaa 27508616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 19 - 78
Target Start/End: Complemental strand, 15272417 - 15272358
Alignment:
Q  19 aacatagtctacattcaggaactattttgcaatttatctgcattcagggactaaaatgac 78  Q
    |||| |||||||||||||| ||||||||||||||| ||||||||||||||||||||||||    
T  15272417 aacaaagtctacattcagggactattttgcaatttctctgcattcagggactaaaatgac 15272358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 18 - 79
Target Start/End: Original strand, 14197643 - 14197704
Alignment:
Q  18 taacatagtctacattcaggaactattttgcaatttatctgcattcagggactaaaatgacg 79  Q
    ||||| |||||||||||||| ||||| ||||||||||||||||||||||| |||||||||||    
T  14197643 taacagagtctacattcagggactatattgcaatttatctgcattcaggggctaaaatgacg 14197704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 18 - 78
Target Start/End: Original strand, 6441528 - 6441588
Alignment:
Q  18 taacatagtctacattcaggaactattttgcaatttatctgcattcagggactaaaatgac 78  Q
    ||||| |||||||||||||| | ||||||||||||||||||||||||| ||||||| ||||    
T  6441528 taacaaagtctacattcagggattattttgcaatttatctgcattcagagactaaagtgac 6441588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 18 - 78
Target Start/End: Complemental strand, 15000741 - 15000681
Alignment:
Q  18 taacatagtctacattcaggaactattttgcaatttatctgcattcagggactaaaatgac 78  Q
    ||||||| ||||||||| |  | ||||||||||||||||||||||||||||||||| ||||    
T  15000741 taacataatctacattctgagaatattttgcaatttatctgcattcagggactaaagtgac 15000681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 24 - 110
Target Start/End: Original strand, 45013061 - 45013150
Alignment:
Q  24 agtctacattcaggaactattttgcaatttatctgcattcagggactaaaatgacgtc---tttcttattaagggaccaaagtgattaat 110  Q
    |||||| ||||| | ||||||||||||||||| |||||||| |||||||| ||||| |   |||| ||||||||||| ||||||| ||||    
T  45013061 agtctatattcaaggactattttgcaatttatttgcattcaaggactaaactgacgactcttttcctattaagggactaaagtgactaat 45013150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 24 - 78
Target Start/End: Original strand, 3404646 - 3404700
Alignment:
Q  24 agtctacattcaggaactattttgcaatttatctgcattcagggactaaaatgac 78  Q
    |||||||||||| | ||||||||||||||| ||||||||||||| ||||| ||||    
T  3404646 agtctacattcaaggactattttgcaatttctctgcattcagggcctaaagtgac 3404700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 18 - 79
Target Start/End: Original strand, 43257416 - 43257477
Alignment:
Q  18 taacatagtctacattcaggaactattttgcaatttatctgcattcagggactaaaatgacg 79  Q
    ||||| |||||| ||||| | | |||||||||||||||||||||||||||| |||| |||||    
T  43257416 taacagagtctatattcaaggattattttgcaatttatctgcattcagggattaaagtgacg 43257477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 78
Target Start/End: Original strand, 27508760 - 27508820
Alignment:
Q  18 taacatagtctacattcaggaactattttgcaatttatctgcattcagggactaaaatgac 78  Q
    ||||| |||||||||||||| ||| ||||||||||| ||| | ||||||||||||| ||||    
T  27508760 taacagagtctacattcagggactgttttgcaatttctctacgttcagggactaaagtgac 27508820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 24 - 71
Target Start/End: Complemental strand, 6441434 - 6441387
Alignment:
Q  24 agtctacattcaggaactattttgcaatttatctgcattcagggacta 71  Q
    |||||||||||||| ||| ||||||||||| | |||||||||||||||    
T  6441434 agtctacattcagggactgttttgcaatttctttgcattcagggacta 6441387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 18 - 79
Target Start/End: Complemental strand, 3404553 - 3404492
Alignment:
Q  18 taacatagtctacattcaggaactattttgcaatttatctgcattcagggactaaaatgacg 79  Q
    ||||| ||| |||||||| | |||| |||||||||||||||| || ||| ||||||||||||    
T  3404553 taacagagtgtacattcatggactactttgcaatttatctgcgtttaggtactaaaatgacg 3404492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 18 - 73
Target Start/End: Original strand, 37787871 - 37787922
Alignment:
Q  18 taacatagtctacattcaggaactattttgcaatttatctgcattcagggactaaa 73  Q
    ||||| ||||||||||||| ||||||||||||||||   |||||||||||||||||    
T  37787871 taacaaagtctacattcag-aactattttgcaattt---tgcattcagggactaaa 37787922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 55; Significance: 8e-23; HSPs: 22)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 18 - 115
Target Start/End: Original strand, 22018034 - 22018134
Alignment:
Q  18 taacatagtctacattcaggaactattttgcaatttatctgcattcagggactaaaatgacgtc---tttcttattaagggaccaaagtgattaatctcc 114  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||| ||| ||||||||| |   |||| |||| |||||| ||||||| ||||||||    
T  22018034 taacatagtctacattcagggactattttgcaatttatctgcattcagagacgaaaatgacgactcatttcctatttagggactaaagtgactaatctcc 22018133  T
Q  115 c 115  Q
    |    
T  22018134 c 22018134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 18 - 110
Target Start/End: Complemental strand, 9826727 - 9826632
Alignment:
Q  18 taacatagtctacattcaggaactattttgcaatttatctgcattcagggactaaa---atgacgtctttcttattaagggaccaaagtgattaat 110  Q
    ||||||||| ||||||||| ||||||||||||||||||||||||||| ||||||||   || |  |||||| |||| |||||||||||||| ||||    
T  9826727 taacatagtatacattcagaaactattttgcaatttatctgcattcatggactaaagtgataatttctttcctattcagggaccaaagtgactaat 9826632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 26 - 79
Target Start/End: Original strand, 18830766 - 18830819
Alignment:
Q  26 tctacattcaggaactattttgcaatttatctgcattcagggactaaaatgacg 79  Q
    |||||||||| | ||||||||||||||||||||||||||||||||||| |||||    
T  18830766 tctacattcaaggactattttgcaatttatctgcattcagggactaaagtgacg 18830819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 18 - 79
Target Start/End: Original strand, 30471002 - 30471063
Alignment:
Q  18 taacatagtctacattcaggaactattttgcaatttatctgcattcagggactaaaatgacg 79  Q
    |||||||||||||||||||| |||||||| |||||||||| |||||||| |||||| |||||    
T  30471002 taacatagtctacattcagggactattttacaatttatctacattcaggaactaaagtgacg 30471063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 18 - 79
Target Start/End: Original strand, 55382740 - 55382801
Alignment:
Q  18 taacatagtctacattcaggaactattttgcaatttatctgcattcagggactaaaatgacg 79  Q
    ||||| |||||||||||||  |||||||||||||||||||||||||||||| |||| |||||    
T  55382740 taacaaagtctacattcagagactattttgcaatttatctgcattcagggattaaagtgacg 55382801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 18 - 77
Target Start/End: Complemental strand, 5448291 - 5448232
Alignment:
Q  18 taacatagtctacattcaggaactattttgcaatttatctgcattcagggactaaaatga 77  Q
    ||||| ||| ||||||||||  ||||||| ||||||||||||||||||||||||||||||    
T  5448291 taacagagtttacattcaggggctattttacaatttatctgcattcagggactaaaatga 5448232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 24 - 79
Target Start/End: Original strand, 47943638 - 47943693
Alignment:
Q  24 agtctacattcaggaactattttgcaatttatctgcattcagggactaaaatgacg 79  Q
    |||||||||||||| |||||||||||||||||||||||| | |||||||| |||||    
T  47943638 agtctacattcagggactattttgcaatttatctgcatttaaggactaaagtgacg 47943693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 26 - 114
Target Start/End: Original strand, 1387535 - 1387626
Alignment:
Q  26 tctacattcaggaactattttgcaatttatctgcattcagggactaaaatgacg---tctttcttattaagggaccaaagtgattaatctcc 114  Q
    |||||||||||| | |||||| |||||||||||||||||||| ||||||||| |   |||||| |||| |||||| ||||| | ||||||||    
T  1387535 tctacattcagggaatattttacaatttatctgcattcagggcctaaaatgatgatttctttcctattcagggactaaagtaactaatctcc 1387626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 26 - 78
Target Start/End: Complemental strand, 37694987 - 37694935
Alignment:
Q  26 tctacattcaggaactattttgcaatttatctgcattcagggactaaaatgac 78  Q
    |||||||||||| ||| ||||||||||| ||||||||||||||||||| ||||    
T  37694987 tctacattcagggactgttttgcaatttctctgcattcagggactaaagtgac 37694935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 19 - 78
Target Start/End: Original strand, 5448381 - 5448440
Alignment:
Q  19 aacatagtctacattcaggaactattttgcaatttatctgcattcagggactaaaatgac 78  Q
    |||| ||| |||||||||| ||| ||||||||||| ||||||||||||||||||| ||||    
T  5448381 aacagagtttacattcagggactgttttgcaatttctctgcattcagggactaaagtgac 5448440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 19 - 78
Target Start/End: Complemental strand, 10757664 - 10757605
Alignment:
Q  19 aacatagtctacattcaggaactattttgcaatttatctgcattcagggactaaaatgac 78  Q
    |||||||||||||| || | ||| ||||||||||||||| ||||||||||||||| ||||    
T  10757664 aacatagtctacatccatggactgttttgcaatttatctacattcagggactaaagtgac 10757605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 19 - 78
Target Start/End: Complemental strand, 10970835 - 10970776
Alignment:
Q  19 aacatagtctacattcaggaactattttgcaatttatctgcattcagggactaaaatgac 78  Q
    |||||||||||||| || | ||| ||||||||||||||| ||||||||||||||| ||||    
T  10970835 aacatagtctacatccatggactgttttgcaatttatctacattcagggactaaagtgac 10970776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 24 - 79
Target Start/End: Complemental strand, 29908978 - 29908923
Alignment:
Q  24 agtctacattcaggaactattttgcaatttatctgcattcagggactaaaatgacg 79  Q
    ||||| |||||| ||||||||||||||||||||||||| ||| ||||||| |||||    
T  29908978 agtctgcattcatgaactattttgcaatttatctgcatccagtgactaaagtgacg 29908923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 18 - 73
Target Start/End: Original strand, 37695116 - 37695171
Alignment:
Q  18 taacatagtctacattcaggaactattttgcaatttatctgcattcagggactaaa 73  Q
    ||||| |||||||||||||  | |||||||||||||||||||||||| ||||||||    
T  37695116 taacagagtctacattcagagattattttgcaatttatctgcattcaaggactaaa 37695171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 19 - 78
Target Start/End: Complemental strand, 47463908 - 47463849
Alignment:
Q  19 aacatagtctacattcaggaactattttgcaatttatctgcattcagggactaaaatgac 78  Q
    |||| ||||||||||||   ||| ||||||||||||||||||||||||||||||| ||||    
T  47463908 aacagagtctacattcaaagactgttttgcaatttatctgcattcagggactaaagtgac 47463849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 18 - 115
Target Start/End: Original strand, 2634208 - 2634308
Alignment:
Q  18 taacatagtctacattcaggaactattttgcaatttatctgcattcagggactaaaatgacgtc---tttcttattaagggaccaaagtgattaatctcc 114  Q
    ||||| |||||||||||||  ||||||| ||||||||||| ||||||| ||||||| ||| | |   ||||||||| | |||| ||||||| ||||||||    
T  2634208 taacagagtctacattcagagactatttagcaatttatctacattcagtgactaaagtgaagactcatttcttatttaaggactaaagtgactaatctcc 2634307  T
Q  115 c 115  Q
    |    
T  2634308 c 2634308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 28 - 78
Target Start/End: Complemental strand, 22017967 - 22017917
Alignment:
Q  28 tacattcaggaactattttgcaatttatctgcattcagggactaaaatgac 78  Q
    |||||||||| ||| ||||||||||| ||||||||||||||||||| ||||    
T  22017967 tacattcagggactgttttgcaatttctctgcattcagggactaaagtgac 22017917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 78
Target Start/End: Complemental strand, 3370060 - 3370000
Alignment:
Q  18 taacatagtctacattcaggaactattttgcaatttatctgcattcagggactaaaatgac 78  Q
    ||||| |||||||||| |   |||||||||||||||||||| ||||||| |||||||||||    
T  3370060 taacagagtctacatttaatgactattttgcaatttatctggattcaggaactaaaatgac 3370000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 18 - 73
Target Start/End: Original strand, 10380779 - 10380834
Alignment:
Q  18 taacatagtctacattcaggaactattttgcaatttatctgcattcagggactaaa 73  Q
    ||||| |||||||||| ||  |||||||||||||||||||| |||||||| |||||    
T  10380779 taacagagtctacatttagagactattttgcaatttatctgaattcaggggctaaa 10380834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 18 - 79
Target Start/End: Original strand, 2232554 - 2232615
Alignment:
Q  18 taacatagtctacattcaggaactattttgcaatttatctgcattcagggactaaaatgacg 79  Q
    |||||||||||||||| | | |||||||| |||||||| | |||| |||||||||| |||||    
T  2232554 taacatagtctacattgaaggactattttacaatttatttacatttagggactaaagtgacg 2232615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 18 - 79
Target Start/End: Complemental strand, 11821818 - 11821757
Alignment:
Q  18 taacatagtctacattcaggaactattttgcaatttatctgcattcagggactaaaatgacg 79  Q
    ||||| ||||||||||||   |||||||||||||||||||| ||| | |||||||| |||||    
T  11821818 taacagagtctacattcaaagactattttgcaatttatctgtatttaaggactaaagtgacg 11821757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 18 - 78
Target Start/End: Original strand, 18836462 - 18836523
Alignment:
Q  18 taacatagtctacattcaggaacta-ttttgcaatttatctgcattcagggactaaaatgac 78  Q
    ||||| ||||||| |||||| | || ||||||||||| ||||||||||||||||||| ||||    
T  18836462 taacagagtctacgttcagggattacttttgcaatttttctgcattcagggactaaagtgac 18836523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 53; Significance: 1e-21; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 24 - 115
Target Start/End: Original strand, 13753419 - 13753513
Alignment:
Q  24 agtctacattcaggaactattttgcaatttatctgcattcagggactaaaatgacg---tctttcttattaagggaccaaagtgattaatctccc 115  Q
    |||||||||| ||| ||||||||||||||||||||||||||| |||||||||||||   |||||| |||| |||||| ||||||| |||||||||    
T  13753419 agtctacatttagggactattttgcaatttatctgcattcagagactaaaatgacgacttctttcctatttagggactaaagtgactaatctccc 13753513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 19 - 78
Target Start/End: Original strand, 17497180 - 17497239
Alignment:
Q  19 aacatagtctacattcaggaactattttgcaatttatctgcattcagggactaaaatgac 78  Q
    |||| |||||||||||||| ||||||||||||||| ||||||||||||||||||||||||    
T  17497180 aacaaagtctacattcagggactattttgcaatttctctgcattcagggactaaaatgac 17497239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 18 - 79
Target Start/End: Original strand, 21943927 - 21943988
Alignment:
Q  18 taacatagtctacattcaggaactattttgcaatttatctgcattcagggactaaaatgacg 79  Q
    ||||| |||||||||||| ||||||||||||||||||| ||||||||  |||||||||||||    
T  21943927 taacagagtctacattcatgaactattttgcaatttatttgcattcaatgactaaaatgacg 21943988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 24 - 79
Target Start/End: Original strand, 10760197 - 10760252
Alignment:
Q  24 agtctacattcaggaactattttgcaatttatctgcattcagggactaaaatgacg 79  Q
    |||||||||| ||| ||||||||||||||||||||||||||| ||||||| |||||    
T  10760197 agtctacatttagggactattttgcaatttatctgcattcagagactaaagtgacg 10760252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 18 - 105
Target Start/End: Complemental strand, 19491767 - 19491677
Alignment:
Q  18 taacatagtctacattcaggaactattttgcaatttatctgcattcagggactaaa---atgacgtctttcttattaagggaccaaagtga 105  Q
    ||||||||| ||||||||  |||||||||||||||||||||||||||  |||||||   || |  |||||| |||| ||||||||||||||    
T  19491767 taacatagtatacattcataaactattttgcaatttatctgcattcatagactaaagtgataatttctttcctattcagggaccaaagtga 19491677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 19 - 78
Target Start/End: Complemental strand, 21211511 - 21211452
Alignment:
Q  19 aacatagtctacattcaggaactattttgcaatttatctgcattcagggactaaaatgac 78  Q
    |||| |||||||||||||  ||| ||||||||||| ||||||||||||||||||| ||||    
T  21211511 aacaaagtctacattcagagactgttttgcaatttttctgcattcagggactaaagtgac 21211452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 39 - 78
Target Start/End: Original strand, 21211604 - 21211643
Alignment:
Q  39 actattttgcaatttatctgcattcagggactaaaatgac 78  Q
    ||||||||||||||||||||||||||||||||||| ||||    
T  21211604 actattttgcaatttatctgcattcagggactaaagtgac 21211643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 18 - 73
Target Start/End: Complemental strand, 2555534 - 2555479
Alignment:
Q  18 taacatagtctacattcaggaactattttgcaatttatctgcattcagggactaaa 73  Q
    ||||| |||||||||||||  ||||||||||||| ||| || ||||||||||||||    
T  2555534 taacagagtctacattcagagactattttgcaatatatttgtattcagggactaaa 2555479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 28 - 79
Target Start/End: Original strand, 19564849 - 19564900
Alignment:
Q  28 tacattcaggaactattttgcaatttatctgcattcagggactaaaatgacg 79  Q
    ||||||||  |||||||||||||||||||| |||||| |||||||| |||||    
T  19564849 tacattcaaaaactattttgcaatttatctccattcaaggactaaagtgacg 19564900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 28 - 63
Target Start/End: Complemental strand, 34419565 - 34419530
Alignment:
Q  28 tacattcaggaactattttgcaatttatctgcattc 63  Q
    |||||||||| |||||||||||||||||||||||||    
T  34419565 tacattcagggactattttgcaatttatctgcattc 34419530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 19 - 78
Target Start/End: Original strand, 43548957 - 43549016
Alignment:
Q  19 aacatagtctacattcaggaactattttgcaatttatctgcattcagggactaaaatgac 78  Q
    ||||||||||||||||| | ||| ||||||||||| |||||| ||| |||||||| ||||    
T  43548957 aacatagtctacattcatgtactgttttgcaatttctctgcaatcaaggactaaagtgac 43549016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 24 - 73
Target Start/End: Original strand, 2555629 - 2555678
Alignment:
Q  24 agtctacattcaggaactattttgcaatttatctgcattcagggactaaa 73  Q
    |||||||||||||| ||| ||||||||||| |||||||| || |||||||    
T  2555629 agtctacattcagggactgttttgcaatttttctgcatttagagactaaa 2555678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 18 - 75
Target Start/End: Original strand, 30100795 - 30100852
Alignment:
Q  18 taacatagtctacattcaggaactattttgcaatttatctgcattcagggactaaaat 75  Q
    ||||| ||||| |||||| | ||||||||||||||||||| ||||||||  |||||||    
T  30100795 taacagagtctgcattcatggactattttgcaatttatctacattcaggacctaaaat 30100852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 78
Target Start/End: Complemental strand, 17497090 - 17497031
Alignment:
Q  18 taacatagtctacattcaggaactattttgcaatttatctgcattcagggactaaaatgac 78  Q
    ||||| || ||||||||| | ||||||||||||||||||  |||||| |||||||||||||    
T  17497090 taacagagactacattcacggactattttgcaatttatc-acattcatggactaaaatgac 17497031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 78
Target Start/End: Complemental strand, 21943838 - 21943778
Alignment:
Q  18 taacatagtctacattcaggaactattttgcaatttatctgcattcagggactaaaatgac 78  Q
    ||||| |||||||||||| |  || ||||||||||| |||||||||||| |||||| ||||    
T  21943838 taacaaagtctacattcaaggtctgttttgcaatttctctgcattcaggtactaaagtgac 21943778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 79
Target Start/End: Original strand, 31912381 - 31912441
Alignment:
Q  19 aacatagtctacattcaggaactattttgcaatttatctgcattcagggactaaaatgacg 79  Q
    |||||| |||||||||| ||| |||||| |||||||| | |||| | ||||||||||||||    
T  31912381 aacataatctacattcaagaattattttacaatttatttacatttatggactaaaatgacg 31912441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 48; Significance: 1e-18; HSPs: 22)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 18 - 116
Target Start/End: Complemental strand, 48755422 - 48755321
Alignment:
Q  18 taacatagtctacattcaggaactattttgcaatttatctgcattcagggactaaaatgacg---tctttcttattaagggaccaaagtgattaatctcc 114  Q
    ||||| |||||||||||||| |||||||||||| |||||||||||||| ||||||| |||||    ||||| |||| |||||| ||||||| ||||||||    
T  48755422 taacagagtctacattcagggactattttgcaacttatctgcattcagagactaaagtgacgactcctttcctattcagggactaaagtgactaatctcc 48755323  T
Q  115 cc 116  Q
    ||    
T  48755322 cc 48755321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 18 - 115
Target Start/End: Complemental strand, 1426579 - 1426479
Alignment:
Q  18 taacatagtctacattcaggaactattttgcaatttatctgcattcagggactaaaatgacgtc---tttcttattaagggaccaaagtgattaatctcc 114  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||  ||||| ||||| |   |||| |||| || ||| ||||||| ||||||||    
T  1426579 taacataatctacattcaggaactattttgcaatttatctgcattcaggatctaaagtgacgactcatttcctattcagagactaaagtgactaatctcc 1426480  T
Q  115 c 115  Q
    |    
T  1426479 c 1426479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 18 - 115
Target Start/End: Complemental strand, 33343101 - 33343001
Alignment:
Q  18 taacatagtctacattcaggaactattttgcaatttatctgcattcagggactaaaatgacgtc---tttcttattaagggaccaaagtgattaatctcc 114  Q
    |||||||||||||||||||| || |||| ||||||||||||||||||||||||||| ||||| |   |||  |||| |||||| ||||||| ||||||||    
T  33343101 taacatagtctacattcagggaccatttagcaatttatctgcattcagggactaaagtgacgactcattttctattcagggactaaagtgactaatctcc 33343002  T
Q  115 c 115  Q
    |    
T  33343001 c 33343001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 18 - 110
Target Start/End: Original strand, 18445589 - 18445684
Alignment:
Q  18 taacatagtctacattcaggaactattttgcaatttatctgcattcagggactaaa---atgacgtctttcttattaagggaccaaagtgattaat 110  Q
    ||||||||| ||||||||| ||||||||||||||||||||||||||| ||||||||   || |  |||||| |||| |||||||||||||| ||||    
T  18445589 taacatagtatacattcagaaactattttgcaatttatctgcattcatggactaaagtgataatttctttcctattcagggaccaaagtgactaat 18445684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 19 - 78
Target Start/End: Original strand, 48755513 - 48755572
Alignment:
Q  19 aacatagtctacattcaggaactattttgcaatttatctgcattcagggactaaaatgac 78  Q
    |||| |||||||||||||||||| ||||||||||| ||||||||||||||||||| ||||    
T  48755513 aacagagtctacattcaggaactgttttgcaatttctctgcattcagggactaaagtgac 48755572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 18 - 79
Target Start/End: Complemental strand, 15031283 - 15031222
Alignment:
Q  18 taacatagtctacattcaggaactattttgcaatttatctgcattcagggactaaaatgacg 79  Q
    ||||| |||||||||||||| |||||||| ||||||||||||||||| |||||||| |||||    
T  15031283 taacagagtctacattcagggactattttacaatttatctgcattcaaggactaaagtgacg 15031222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 24 - 73
Target Start/End: Original strand, 26498706 - 26498755
Alignment:
Q  24 agtctacattcaggaactattttgcaatttatctgcattcagggactaaa 73  Q
    |||||||||||| | |||||||||||||||||||||||||||||||||||    
T  26498706 agtctacattcatggactattttgcaatttatctgcattcagggactaaa 26498755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 18 - 78
Target Start/End: Original strand, 20759111 - 20759171
Alignment:
Q  18 taacatagtctacattcaggaactattttgcaatttatctgcattcagggactaaaatgac 78  Q
    ||||| |||||||||||| | ||||||||||||||| |||||||||| |||||||||||||    
T  20759111 taacaaagtctacattcaaggactattttgcaatttctctgcattcaaggactaaaatgac 20759171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 19 - 78
Target Start/End: Complemental strand, 26498642 - 26498583
Alignment:
Q  19 aacatagtctacattcaggaactattttgcaatttatctgcattcagggactaaaatgac 78  Q
    ||||| ||||||||||||| ||| ||||||||||| ||||||||||||||||||| ||||    
T  26498642 aacatggtctacattcagggactgttttgcaatttctctgcattcagggactaaagtgac 26498583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 18 - 79
Target Start/End: Complemental strand, 21514839 - 21514778
Alignment:
Q  18 taacatagtctacattcaggaactattttgcaatttatctgcattcagggactaaaatgacg 79  Q
    ||||| |||||||||||| | |||||||| ||||||||||| |||||||||||||| |||||    
T  21514839 taacagagtctacattcaaggactattttacaatttatctgtattcagggactaaagtgacg 21514778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 18 - 79
Target Start/End: Complemental strand, 39541769 - 39541708
Alignment:
Q  18 taacatagtctacattcaggaactattttgcaatttatctgcattcagggactaaaatgacg 79  Q
    ||||||| |||| ||||||| |||| |||||||||||||||||||||| ||||||| |||||    
T  39541769 taacataatctatattcagggactactttgcaatttatctgcattcagagactaaagtgacg 39541708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 22 - 78
Target Start/End: Original strand, 21514932 - 21514988
Alignment:
Q  22 atagtctacattcaggaactattttgcaatttatctgcattcagggactaaaatgac 78  Q
    |||||||||||||||| ||| ||||| ||||||||| |||||| |||||||||||||    
T  21514932 atagtctacattcagggactgttttgaaatttatctacattcaaggactaaaatgac 21514988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 18 - 78
Target Start/End: Original strand, 38498287 - 38498347
Alignment:
Q  18 taacatagtctacattcaggaactattttgcaatttatctgcattcagggactaaaatgac 78  Q
    ||||| |||||||||||||  ||||||||||||||| | ||||||||||||||||| ||||    
T  38498287 taacaaagtctacattcagagactattttgcaatttctatgcattcagggactaaagtgac 38498347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 18 - 78
Target Start/End: Complemental strand, 44967950 - 44967890
Alignment:
Q  18 taacatagtctacattcaggaactattttgcaatttatctgcattcagggactaaaatgac 78  Q
    ||||| ||||||||||||  |||||||||||||| ||| ||||||||||||||||| ||||    
T  44967950 taacagagtctacattcaaaaactattttgcaatatatttgcattcagggactaaagtgac 44967890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 19 - 78
Target Start/End: Original strand, 1426660 - 1426719
Alignment:
Q  19 aacatagtctacattcaggaactattttgcaatttatctgcattcagggactaaaatgac 78  Q
    |||| |||||||||||||  ||| ||||||||||| |||||||||||||| |||||||||    
T  1426660 aacaaagtctacattcagtgactgttttgcaatttctctgcattcagggattaaaatgac 1426719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 24 - 78
Target Start/End: Original strand, 15005148 - 15005202
Alignment:
Q  24 agtctacattcaggaactattttgcaatttatctgcattcagggactaaaatgac 78  Q
    ||||||||||||| |||| ||||||||||| ||||||||||| ||||||| ||||    
T  15005148 agtctacattcagaaactgttttgcaatttctctgcattcagagactaaagtgac 15005202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 39 - 73
Target Start/End: Complemental strand, 38498209 - 38498175
Alignment:
Q  39 actattttgcaatttatctgcattcagggactaaa 73  Q
    |||||||||||||||||||||||||||||||||||    
T  38498209 actattttgcaatttatctgcattcagggactaaa 38498175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 18 - 79
Target Start/End: Complemental strand, 42453138 - 42453077
Alignment:
Q  18 taacatagtctacattcaggaactattttgcaatttatctgcattcagggactaaaatgacg 79  Q
    ||||| |||||||||| ||| ||||||||||||||||| ||||||||  ||||||| |||||    
T  42453138 taacagagtctacatttagggactattttgcaatttatttgcattcatagactaaagtgacg 42453077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 26 - 79
Target Start/End: Original strand, 43562792 - 43562845
Alignment:
Q  26 tctacattcaggaactattttgcaatttatctgcattcagggactaaaatgacg 79  Q
    |||||||||| | |||||||| ||||||||||||||||||  ||||||||||||    
T  43562792 tctacattcaaggactattttacaatttatctgcattcagaaactaaaatgacg 43562845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 19 - 78
Target Start/End: Complemental strand, 11989139 - 11989080
Alignment:
Q  19 aacatagtctacattcaggaactattttgcaatttatctgcattcagggactaaaatgac 78  Q
    |||| |||||| ||||||| ||| ||||||||||| ||||||||||| ||||||| ||||    
T  11989139 aacagagtctatattcagggactgttttgcaatttctctgcattcagagactaaagtgac 11989080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 19 - 78
Target Start/End: Original strand, 39541795 - 39541854
Alignment:
Q  19 aacatagtctacattcaggaactattttgcaatttatctgcattcagggactaaaatgac 78  Q
    |||| |||||||||||||  ||| |||| |||||| ||||||||||||||||||| ||||    
T  39541795 aacagagtctacattcagagactgttttacaatttctctgcattcagggactaaagtgac 39541854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 39 - 79
Target Start/End: Original strand, 11989250 - 11989290
Alignment:
Q  39 actattttgcaatttatctgcattcagggactaaaatgacg 79  Q
    ||||||||||||||||||| ||| ||| |||||||||||||    
T  11989250 actattttgcaatttatctacatgcagagactaaaatgacg 11989290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 47; Significance: 5e-18; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 18 - 115
Target Start/End: Complemental strand, 13536655 - 13536555
Alignment:
Q  18 taacatagtctacattcaggaactattttgcaatttatctgcattcagggactaaaatgacg---tctttcttattaagggaccaaagtgattaatctcc 114  Q
    ||||| |||||||||||||| |||||||||||||||||||||||||||| | |||| |||||    ||||| |||| |||||| ||||||| ||||||||    
T  13536655 taacagagtctacattcagggactattttgcaatttatctgcattcaggcattaaagtgacggctcctttcctattcagggactaaagtgactaatctcc 13536556  T
Q  115 c 115  Q
    |    
T  13536555 c 13536555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 19 - 78
Target Start/End: Complemental strand, 10587981 - 10587922
Alignment:
Q  19 aacatagtctacattcaggaactattttgcaatttatctgcattcagggactaaaatgac 78  Q
    ||||||||||||||||||| ||| ||||||||||| ||||||||||||||||||| ||||    
T  10587981 aacatagtctacattcagggactgttttgcaatttctctgcattcagggactaaagtgac 10587922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 18 - 73
Target Start/End: Complemental strand, 25089247 - 25089192
Alignment:
Q  18 taacatagtctacattcaggaactattttgcaatttatctgcattcagggactaaa 73  Q
    ||||| |||||||||||||| ||||||||||||||||||||||||||| |||||||    
T  25089247 taacagagtctacattcagggactattttgcaatttatctgcattcagagactaaa 25089192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 18 - 115
Target Start/End: Complemental strand, 28752337 - 28752237
Alignment:
Q  18 taacatagtctacattcaggaactattttgcaatttatctgcattcagggactaaaatga---cgtctttcttattaagggaccaaagtgattaatctcc 114  Q
    ||||| |||||||||||| | |||||||||||||||||||||||||||| |||||| |||   | |||||||| || | |||| ||||||| ||||||||    
T  28752337 taacagagtctacattcatggactattttgcaatttatctgcattcaggtactaaagtgacatcttctttcttgttcaaggactaaagtgactaatctcc 28752238  T
Q  115 c 115  Q
    |    
T  28752237 c 28752237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 26 - 75
Target Start/End: Original strand, 10672809 - 10672858
Alignment:
Q  26 tctacattcaggaactattttgcaatttatctgcattcagggactaaaat 75  Q
    |||||||||||||||||||||||||||||||||||||||  |||||||||    
T  10672809 tctacattcaggaactattttgcaatttatctgcattcaaagactaaaat 10672858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 18 - 110
Target Start/End: Original strand, 21222649 - 21222746
Alignment:
Q  18 taacatagtctacattcaggaactattttgcaatttatc--tgcattcagggactaaaatgacg---tctttcttattaagggaccaaagtgattaat 110  Q
    ||||||||| |||||||||  ||||||||||||||||||  | ||||||||||||||| |||||   |||||| |||| |||||||||||||| ||||    
T  21222649 taacatagtatacattcagagactattttgcaatttatctatacattcagggactaaagtgacgatttctttcctattcagggaccaaagtgactaat 21222746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 18 - 73
Target Start/End: Original strand, 19295465 - 19295520
Alignment:
Q  18 taacatagtctacattcaggaactattttgcaatttatctgcattcagggactaaa 73  Q
    ||||| ||||| |||||||| ||||||||| |||||||||||||||||||||||||    
T  19295465 taacagagtctgcattcagggactattttgtaatttatctgcattcagggactaaa 19295520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 19 - 78
Target Start/End: Original strand, 25089337 - 25089396
Alignment:
Q  19 aacatagtctacattcaggaactattttgcaatttatctgcattcagggactaaaatgac 78  Q
    ||||||||||| ||||||||||| ||||||||||| ||||||||||| ||||||| ||||    
T  25089337 aacatagtctatattcaggaactgttttgcaatttctctgcattcagtgactaaagtgac 25089396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 24 - 115
Target Start/End: Original strand, 10588061 - 10588155
Alignment:
Q  24 agtctacattcaggaactattttgcaatttatctgcattcagggactaaaatg---acgtctttcttattaagggaccaaagtgattaatctccc 115  Q
    |||||||||||| | |||||||||||||||||||||||||| ||||| || ||   ||  ||||| |||| |||||| ||||||| |||||||||    
T  10588061 agtctacattcatggactattttgcaatttatctgcattcatggacttaagtgacaactcctttcctattcagggactaaagtgactaatctccc 10588155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 18 - 79
Target Start/End: Complemental strand, 10862108 - 10862047
Alignment:
Q  18 taacatagtctacattcaggaactattttgcaatttatctgcattcagggactaaaatgacg 79  Q
    ||||| |||||||||||||| ||||  |||||||| || ||||||||||||||||| |||||    
T  10862108 taacagagtctacattcagggactacattgcaattaatttgcattcagggactaaagtgacg 10862047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 24 - 73
Target Start/End: Original strand, 10862202 - 10862251
Alignment:
Q  24 agtctacattcaggaactattttgcaatttatctgcattcagggactaaa 73  Q
    |||||||||||||  ||| ||||||||||| |||||||||||||||||||    
T  10862202 agtctacattcagctactgttttgcaatttctctgcattcagggactaaa 10862251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 25 - 78
Target Start/End: Original strand, 26705219 - 26705272
Alignment:
Q  25 gtctacattcaggaactattttgcaatttatctgcattcagggactaaaatgac 78  Q
    ||||||||||||| ||| ||||||||||| ||| ||||||||||||||| ||||    
T  26705219 gtctacattcagggactgttttgcaatttctctacattcagggactaaagtgac 26705272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 24 - 78
Target Start/End: Original strand, 13536751 - 13536805
Alignment:
Q  24 agtctacattcaggaactattttgcaatttatctgcattcagggactaaaatgac 78  Q
    |||||||||||||| ||| ||||||||||| |||| |||||| ||||||| ||||    
T  13536751 agtctacattcagggactgttttgcaatttctctgtattcagagactaaagtgac 13536805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 78
Target Start/End: Complemental strand, 19295376 - 19295316
Alignment:
Q  18 taacatagtctacattcaggaactattttgcaatttatctgcattcagggactaaaatgac 78  Q
    |||||||| ||| ||| ||| ||| ||||||||||| || |||||||||||||||| ||||    
T  19295376 taacatagcctatatttagggactgttttgcaatttctcagcattcagggactaaagtgac 19295316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 47; Significance: 5e-18; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 19 - 77
Target Start/End: Original strand, 39598692 - 39598750
Alignment:
Q  19 aacatagtctacattcaggaactattttgcaatttatctgcattcagggactaaaatga 77  Q
    |||| |||||||||||||| ||||||||||||||||||||||||||| |||||||||||    
T  39598692 aacaaagtctacattcagggactattttgcaatttatctgcattcagtgactaaaatga 39598750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 18 - 78
Target Start/End: Original strand, 32092911 - 32092971
Alignment:
Q  18 taacatagtctacattcaggaactattttgcaatttatctgcattcagggactaaaatgac 78  Q
    ||||| |||||||||||||| |||||||| |||||||||||||||||||||||||| ||||    
T  32092911 taacagagtctacattcagggactatttttcaatttatctgcattcagggactaaagtgac 32092971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 18 - 79
Target Start/End: Complemental strand, 31820009 - 31819948
Alignment:
Q  18 taacatagtctacattcaggaactattttgcaatttatctgcattcagggactaaaatgacg 79  Q
    ||||| |||||||||||||  |||||||| ||||||||||||||| ||||||||||||||||    
T  31820009 taacagagtctacattcagtgactattttccaatttatctgcatttagggactaaaatgacg 31819948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 18 - 78
Target Start/End: Complemental strand, 24006975 - 24006915
Alignment:
Q  18 taacatagtctacattcaggaactattttgcaatttatctgcattcagggactaaaatgac 78  Q
    ||||| |||||||||||||| ||| ||||||||||| ||||||||||||||||||| ||||    
T  24006975 taacagagtctacattcagggactgttttgcaatttctctgcattcagggactaaagtgac 24006915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 19 - 78
Target Start/End: Complemental strand, 32092853 - 32092794
Alignment:
Q  19 aacatagtctacattcaggaactattttgcaatttatctgcattcagggactaaaatgac 78  Q
    |||| |||||||||||||| ||| ||||||||||| ||||||||||||||||||| ||||    
T  32092853 aacagagtctacattcagggactgttttgcaatttctctgcattcagggactaaagtgac 32092794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 18 - 79
Target Start/End: Complemental strand, 22092955 - 22092894
Alignment:
Q  18 taacatagtctacattcaggaactattttgcaatttatctgcattcagggactaaaatgacg 79  Q
    ||||| |||||||||||||| |||||||| ||||||||||||| ||| |||||||| |||||    
T  22092955 taacagagtctacattcagggactattttacaatttatctgcaatcaaggactaaagtgacg 22092894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 47; Significance: 5e-18; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 18 - 115
Target Start/End: Complemental strand, 50335536 - 50335436
Alignment:
Q  18 taacatagtctacattcaggaactattttgcaatttatctgcattcagggactaaaatgacgtc---tttcttattaagggaccaaagtgattaatctcc 114  Q
    ||||| |||||||||||| | ||||||||||||||||||||||||||||||||||| ||||| |   |||| |||| |||||  ||||||| ||||||||    
T  50335536 taacaaagtctacattcatggactattttgcaatttatctgcattcagggactaaagtgacgactcatttcctattcagggattaaagtgactaatctcc 50335437  T
Q  115 c 115  Q
    |    
T  50335436 c 50335436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 18 - 78
Target Start/End: Complemental strand, 37608067 - 37608007
Alignment:
Q  18 taacatagtctacattcaggaactattttgcaatttatctgcattcagggactaaaatgac 78  Q
    ||||| |||||||||||| | ||||||||||||||||| ||||||||||||||||||||||    
T  37608067 taacagagtctacattcaaggactattttgcaatttatatgcattcagggactaaaatgac 37608007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 28 - 78
Target Start/End: Original strand, 37608165 - 37608215
Alignment:
Q  28 tacattcaggaactattttgcaatttatctgcattcagggactaaaatgac 78  Q
    |||||||||| ||| ||||||||||| ||||||||||||||||||||||||    
T  37608165 tacattcagggactgttttgcaatttctctgcattcagggactaaaatgac 37608215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 18 - 79
Target Start/End: Complemental strand, 13735540 - 13735479
Alignment:
Q  18 taacatagtctacattcaggaactattttgcaatttatctgcattcagggactaaaatgacg 79  Q
    ||||| ||||||||||  || ||||||||| ||||||||||||||||||||||||| |||||    
T  13735540 taacagagtctacattgtgggactattttgtaatttatctgcattcagggactaaagtgacg 13735479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 19 - 78
Target Start/End: Original strand, 50335626 - 50335685
Alignment:
Q  19 aacatagtctacattcaggaactattttgcaatttatctgcattcagggactaaaatgac 78  Q
    |||| |||||||||||||| ||| ||||||||||| |||||||||||||| |||| ||||    
T  50335626 aacagagtctacattcagggactgttttgcaatttgtctgcattcagggattaaagtgac 50335685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 64
Target Start/End: Complemental strand, 11633289 - 11633243
Alignment:
Q  18 taacatagtctacattcaggaactattttgcaatttatctgcattca 64  Q
    ||||||| |||||||||| |||||||||| |||||||||||| ||||    
T  11633289 taacataatctacattcatgaactattttacaatttatctgctttca 11633243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 73
Target Start/End: Original strand, 13735631 - 13735685
Alignment:
Q  19 aacatagtctacattcaggaactattttgcaatttatctgcattcagggactaaa 73  Q
    |||| |||||||||||||| ||| ||||||||||| | ||||||||| |||||||    
T  13735631 aacagagtctacattcagggactgttttgcaatttctttgcattcagagactaaa 13735685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 28 - 78
Target Start/End: Original strand, 32374153 - 32374203
Alignment:
Q  28 tacattcaggaactattttgcaatttatctgcattcagggactaaaatgac 78  Q
    |||||||| | ||||||||||||||||| |||||| |||||||||| ||||    
T  32374153 tacattcatggactattttgcaatttatttgcatttagggactaaagtgac 32374203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 41 - 113
Target Start/End: Complemental strand, 42847097 - 42847022
Alignment:
Q  41 tattttgcaatttatctgcattcagggactaaaat---gacgtctttcttattaagggaccaaagtgattaatctc 113  Q
    |||||| ||||||||||||||| | ||||||||||   ||| ||||||||||| | |||| ||||||| |||||||    
T  42847097 tatttttcaatttatctgcatttatggactaaaatgaggacttctttcttattcaaggactaaagtgactaatctc 42847022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 78
Target Start/End: Complemental strand, 32374080 - 32374020
Alignment:
Q  18 taacatagtctacattcaggaactattttgcaatttatctgcattcagggactaaaatgac 78  Q
    ||||| |||||||||||| ||||| |||||||| || | ||||| ||||||||||| ||||    
T  32374080 taacacagtctacattcaagaactgttttgcaaattctatgcatccagggactaaagtgac 32374020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 78
Target Start/End: Original strand, 42847202 - 42847262
Alignment:
Q  18 taacatagtctacattcaggaactattttgcaatttatctgcattcagggactaaaatgac 78  Q
    ||||| |||||||||||| | | | ||||||||||| |||||||||||||| |||| ||||    
T  42847202 taacaaagtctacattcaaggattgttttgcaatttctctgcattcagggaataaagtgac 42847262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 18 - 110
Target Start/End: Complemental strand, 127899 - 127804
Alignment:
Q  18 taacatagtctacattcaggaactattttgcaatttatctgcattcagggactaaa---atgacgtctttcttattaagggaccaaagtgattaat 110  Q
    ||||||||| ||||||||| ||||||||||||||||||||||||||| ||||||||   || |  |||||| |||| |||||||||||||| ||||    
T  127899 taacatagtatacattcagaaactattttgcaatttatctgcattcatggactaaagtgataatttctttcctattcagggaccaaagtgactaat 127804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 18)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 18 - 79
Target Start/End: Original strand, 12107019 - 12107080
Alignment:
Q  18 taacatagtctacattcaggaactattttgcaatttatctgcattcagggactaaaatgacg 79  Q
    ||||| |||||||||||||| | |||||||||||||||||||||||| |||||||| |||||    
T  12107019 taacagagtctacattcagggattattttgcaatttatctgcattcaaggactaaagtgacg 12107080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 24 - 79
Target Start/End: Complemental strand, 18324086 - 18324031
Alignment:
Q  24 agtctacattcaggaactattttgcaatttatctgcattcagggactaaaatgacg 79  Q
    |||||||||||||| |||||||| ||||||||||||||||| | ||||||||||||    
T  18324086 agtctacattcagggactattttacaatttatctgcattcatgaactaaaatgacg 18324031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 18 - 77
Target Start/End: Complemental strand, 35202693 - 35202634
Alignment:
Q  18 taacatagtctacattcaggaactattttgcaatttatctgcattcagggactaaaatga 77  Q
    |||||||||||||||| | | || |||||||||||||| |||||||||||||||||||||    
T  35202693 taacatagtctacatttaaggaccattttgcaatttatttgcattcagggactaaaatga 35202634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 18 - 110
Target Start/End: Original strand, 37543976 - 37544071
Alignment:
Q  18 taacatagtctacattcaggaactattttgcaatttatctgcattcagggactaaaat---gacgtctttcttattaagggaccaaagtgattaat 110  Q
    ||||| |||||||| |||   ||||||||||||||||||| |||||||||||||||||   ||| |||||| |||| |||||| ||||||| ||||    
T  37543976 taacaaagtctacaatcaatgactattttgcaatttatctacattcagggactaaaatggcgacttctttcatattcagggactaaagtgactaat 37544071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 18 - 79
Target Start/End: Original strand, 41358866 - 41358927
Alignment:
Q  18 taacatagtctacattcaggaactattttgcaatttatctgcattcagggactaaaatgacg 79  Q
    ||||| |||||||||||||| ||||||||||||||||||| |||||| ||| ||||| ||||    
T  41358866 taacagagtctacattcagggactattttgcaatttatctacattcatggattaaaaggacg 41358927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 18 - 78
Target Start/End: Complemental strand, 23976186 - 23976126
Alignment:
Q  18 taacatagtctacattcaggaactattttgcaatttatctgcattcagggactaaaatgac 78  Q
    ||||| |||||||||||||| ||| ||||||||||| |||||||||||| |||||| ||||    
T  23976186 taacagagtctacattcagggactgttttgcaatttctctgcattcaggaactaaagtgac 23976126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 27 - 79
Target Start/End: Original strand, 23976283 - 23976335
Alignment:
Q  27 ctacattcaggaactattttgcaatttatctgcattcagggactaaaatgacg 79  Q
    ||||||||||| |||||||| |||||||||| |||||||| ||||||||||||    
T  23976283 ctacattcagggactattttacaatttatctacattcaggaactaaaatgacg 23976335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 19 - 78
Target Start/End: Complemental strand, 12106961 - 12106902
Alignment:
Q  19 aacatagtctacattcaggaactattttgcaatttatctgcattcagggactaaaatgac 78  Q
    |||| ||||||||| |||| ||| ||||||||||| ||||||||||||||||||| ||||    
T  12106961 aacagagtctacatccagggactgttttgcaatttctctgcattcagggactaaagtgac 12106902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 24 - 110
Target Start/End: Original strand, 18324187 - 18324276
Alignment:
Q  24 agtctacattcaggaactattttgcaatttatctgcattcagggactaaaatg---acgtctttcttattaagggaccaaagtgattaat 110  Q
    |||| ||||||| | ||| ||||||||||| ||||||||||||||||||||||   |||||||||| ||| |||||  ||| ||||||||    
T  18324187 agtcgacattcatggactgttttgcaatttctctgcattcagggactaaaatgactacgtctttctcattcagggattaaaatgattaat 18324276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 24 - 82
Target Start/End: Complemental strand, 21124416 - 21124358
Alignment:
Q  24 agtctacattcaggaactattttgcaatttatctgcattcagggactaaaatgacgtct 82  Q
    |||||||||| ||  |||||||||||||||||||| |||||| ||||||| ||||||||    
T  21124416 agtctacatttagagactattttgcaatttatctgtattcagagactaaagtgacgtct 21124358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 18 - 115
Target Start/End: Original strand, 25149422 - 25149522
Alignment:
Q  18 taacatagtctacattcaggaactattttgcaatttatctgcattcagggactaaaatgacgtc---tttcttattaagggaccaaagtgattaatctcc 114  Q
    ||||| |||||||||||||  | ||||||||| ||||||||||||||| ||||| | ||||| |   |||| |||| |||||| ||||||| ||||||||    
T  25149422 taacaaagtctacattcagagattattttgcagtttatctgcattcagagactatagtgacgactcatttcctattcagggactaaagtgactaatctcc 25149521  T
Q  115 c 115  Q
    |    
T  25149522 c 25149522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 31 - 115
Target Start/End: Complemental strand, 21184381 - 21184294
Alignment:
Q  31 attcaggaactattttgcaatttatctgcattcagggactaaaatgacgtc---tttcttattaagggaccaaagtgattaatctccc 115  Q
    ||||||| ||||||||||||||||||||||||| ||||||| | ||||| |   |||| |||| |||||| ||||||| |||| ||||    
T  21184381 attcagggactattttgcaatttatctgcattcggggactagagtgacgactcatttcctattcagggactaaagtgactaatttccc 21184294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 26 - 79
Target Start/End: Original strand, 22469624 - 22469677
Alignment:
Q  26 tctacattcaggaactattttgcaatttatctgcattcagggactaaaatgacg 79  Q
    ||||||||| ||||||||||| ||||||||||||||| | |||||||| |||||    
T  22469624 tctacattctggaactattttacaatttatctgcatttaaggactaaagtgacg 22469677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 18 - 73
Target Start/End: Complemental strand, 22426941 - 22426887
Alignment:
Q  18 taacatagtctacattcaggaactattttgcaatttatctgcattcagggactaaa 73  Q
    ||||| || ||||||||||| |||||||||||||||||| ||||||| ||||||||    
T  22426941 taacagagactacattcagggactattttgcaatttatc-gcattcatggactaaa 22426887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 19 - 78
Target Start/End: Complemental strand, 25149332 - 25149273
Alignment:
Q  19 aacatagtctacattcaggaactattttgcaatttatctgcattcagggactaaaatgac 78  Q
    |||| |||||||||||||| ||| ||||||||||| | |||||||||||| |||| ||||    
T  25149332 aacagagtctacattcagggactgttttgcaatttctttgcattcagggattaaagtgac 25149273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 18 - 79
Target Start/End: Original strand, 4289109 - 4289170
Alignment:
Q  18 taacatagtctacattcaggaactattttgcaatttatctgcattcagggactaaaatgacg 79  Q
    ||||||||||| | ||||   |||||||||||| ||||||||||||  ||||||||||||||    
T  4289109 taacatagtctgcgttcaaagactattttgcaacttatctgcattcgtggactaaaatgacg 4289170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 29 - 78
Target Start/End: Original strand, 35202794 - 35202843
Alignment:
Q  29 acattcaggaactattttgcaatttatctgcattcagggactaaaatgac 78  Q
    ||||||||| ||| ||||||||||| |||||||||||| |||||| ||||    
T  35202794 acattcagggactgttttgcaatttctctgcattcaggaactaaagtgac 35202843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 72
Target Start/End: Original strand, 10289388 - 10289436
Alignment:
Q  24 agtctacattcaggaactattttgcaatttatctgcattcagggactaa 72  Q
    |||||||||||||||||| |||| |||||| |||||||| ||| |||||    
T  10289388 agtctacattcaggaactgttttacaatttctctgcatttaggaactaa 10289436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0026 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0026
Description:

Target: scaffold0026; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 18 - 105
Target Start/End: Complemental strand, 57544 - 57454
Alignment:
Q  18 taacatagtctacattcaggaactattttgcaatttatctgcattcagggactaaa---atgacgtctttcttattaagggaccaaagtga 105  Q
    ||||||||| ||||||||| ||||||||| ||||||||||||||||| ||||||||   || |  |||||| |||| ||||||||||||||    
T  57544 taacatagtatacattcagaaactatttttcaatttatctgcattcatggactaaagtgataatttctttcctattcagggaccaaagtga 57454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0047 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 2)
Name: scaffold0047
Description:

Target: scaffold0047; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 18 - 115
Target Start/End: Complemental strand, 11700 - 11601
Alignment:
Q  18 taacatagtctacattcaggaactattttgcaatttatctgcattcagggactaaaatgacgtc---tttcttattaagggaccaaagtgattaatctcc 114  Q
    |||||||||||||||||||| |||||||| ||||||||||||||| | |||||||||| ||| |   |||| |||| || ||| ||||||| ||||||||    
T  11700 taacatagtctacattcagggactattttacaatttatctgcattta-ggactaaaataacgactcatttcctattcagtgactaaagtgactaatctcc 11602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0047; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 39 - 73
Target Start/End: Original strand, 11776 - 11810
Alignment:
Q  39 actattttgcaatttatctgcattcagggactaaa 73  Q
    ||||||||||||||| |||||||||||||||||||    
T  11776 actattttgcaatttctctgcattcagggactaaa 11810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 26 - 79
Target Start/End: Complemental strand, 71995 - 71942
Alignment:
Q  26 tctacattcaggaactattttgcaatttatctgcattcagggactaaaatgacg 79  Q
    |||| ||||||| |||||||||||||||||||||||||||||| |||| |||||    
T  71995 tctatattcagggactattttgcaatttatctgcattcagggattaaagtgacg 71942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0066 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0066
Description:

Target: scaffold0066; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 18 - 78
Target Start/End: Complemental strand, 15460 - 15400
Alignment:
Q  18 taacatagtctacattcaggaactattttgcaatttatctgcattcagggactaaaatgac 78  Q
    ||||| |||||||||||||  |||||||| ||||||||||||||||| |||||||| ||||    
T  15460 taacagagtctacattcagagactattttacaatttatctgcattcaaggactaaagtgac 15400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0049 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0049
Description:

Target: scaffold0049; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 18 - 78
Target Start/End: Complemental strand, 59800 - 59740
Alignment:
Q  18 taacatagtctacattcaggaactattttgcaatttatctgcattcagggactaaaatgac 78  Q
    ||||| ||||||||||||||  || ||||||||||| ||||||||||||||||||| ||||    
T  59800 taacagagtctacattcaggggctgttttgcaatttctctgcattcagggactaaagtgac 59740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 19 - 78
Target Start/End: Complemental strand, 190272 - 190213
Alignment:
Q  19 aacatagtctacattcaggaactattttgcaatttatctgcattcagggactaaaatgac 78  Q
    |||| |||||||||||||  ||| ||||||||||| ||||||||||| ||||||||||||    
T  190272 aacagagtctacattcagagactgttttgcaatttctctgcattcagagactaaaatgac 190213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0407 (Bit Score: 35; Significance: 0.00000000007; HSPs: 2)
Name: scaffold0407
Description:

Target: scaffold0407; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 24 - 78
Target Start/End: Complemental strand, 924 - 871
Alignment:
Q  24 agtctacattcaggaactattttgcaatttatctgcattcagggactaaaatgac 78  Q
    ||||||||||||||| || ||||||||||| ||||||||||||||||||| ||||    
T  924 agtctacattcagga-ctgttttgcaatttctctgcattcagggactaaagtgac 871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0407; HSP #2
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 24 - 78
Target Start/End: Complemental strand, 7388 - 7335
Alignment:
Q  24 agtctacattcaggaactattttgcaatttatctgcattcagggactaaaatgac 78  Q
    ||||||||||||||| || ||||||||||| ||||||||||||||||||| ||||    
T  7388 agtctacattcagga-ctgttttgcaatttctctgcattcagggactaaagtgac 7335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0102 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0102
Description:

Target: scaffold0102; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 26 - 74
Target Start/End: Original strand, 24084 - 24132
Alignment:
Q  26 tctacattcaggaactattttgcaatttatctgcattcagggactaaaa 74  Q
    |||||||||||| | | ||||||||||| ||||||||||||||||||||    
T  24084 tctacattcagggattgttttgcaatttctctgcattcagggactaaaa 24132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 32; Significance: 0.000000004; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 18 - 65
Target Start/End: Complemental strand, 314173 - 314126
Alignment:
Q  18 taacatagtctacattcaggaactattttgcaatttatctgcattcag 65  Q
    ||||| |||||||||| ||| |||||||||||||| ||||||||||||    
T  314173 taacagagtctacatttagggactattttgcaattaatctgcattcag 314126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1300 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold1300
Description:

Target: scaffold1300; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 39 - 73
Target Start/End: Complemental strand, 1431 - 1397
Alignment:
Q  39 actattttgcaatttatctgcattcagggactaaa 73  Q
    |||||||||||||||||||||||| ||||||||||    
T  1431 actattttgcaatttatctgcatttagggactaaa 1397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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