View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13915_low_3 (Length: 604)
Name: NF13915_low_3
Description: NF13915
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13915_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 250; Significance: 1e-138; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 250; E-Value: 1e-138
Query Start/End: Original strand, 17 - 353
Target Start/End: Original strand, 1965067 - 1965401
Alignment:
| Q |
17 |
accaccttctaggctgtctaaggaggagataactattgcaaaggaccatggcaaagtccgtcccaacacactccaggtcatacataacgtctactgcata |
116 |
Q |
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| T |
1965067 |
accaccttctaggctatctaaggaggagataactattgcgaaggaccacggaaaagtccgtcccaacacactccaggtcatacagaacgtctactgcata |
1965166 |
T |
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| Q |
117 |
attgaggagtggttgcatgatggcgaatcacacaagtaccaccacacggtctatcgaggacaatgcaggatgagatgcaccccgccatcaagcttcaaat |
216 |
Q |
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| T |
1965167 |
atggaggagtggttgcgtgatggcgaatcacacaagtaccaccac--ggtctaccgaggacaatgcaggatgagatgcaccccgccatcaagcttcaaat |
1965264 |
T |
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| Q |
217 |
tgcccgaaggagaaggaggagggtagtattacgttcacttgttttttagaattttagtgattgcaaattatagtttatatgtgacattattgtttaaacg |
316 |
Q |
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| T |
1965265 |
tgcccgaaggagaaggaggagggtagtattatgttcacttgttttttagaattttattgattgcaaattatagtttatacgtgacattattgttaatacc |
1965364 |
T |
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| Q |
317 |
gtaaattaatgaagttgtcatgacagttgcatattgc |
353 |
Q |
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| T |
1965365 |
gtaaattaatgacattgccgtgacatttgcatattgc |
1965401 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 461 - 594
Target Start/End: Original strand, 1965565 - 1965698
Alignment:
| Q |
461 |
gtgttggtcattacaaaacagcaattctaccaagagttgttgttctatctgcatacctgaaatcagctgccgttgtgactcttgggactctttctatcct |
560 |
Q |
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| T |
1965565 |
gtgttggtcattacaaaacagcaattctaccaagagttgttgttctatctgcatacctgaaatcagctgccgttgtgactcttgggactctttctatcat |
1965664 |
T |
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| Q |
561 |
tgactaagttattgcttcatccattttatctgtg |
594 |
Q |
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| T |
1965665 |
tgactgagttattgcttcatccattttatctgtg |
1965698 |
T |
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