View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13915_low_4 (Length: 576)
Name: NF13915_low_4
Description: NF13915
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13915_low_4 |
 | |
|
| [»] chr3 (1 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 503; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 503; E-Value: 0
Query Start/End: Original strand, 14 - 576
Target Start/End: Complemental strand, 33160561 - 33159998
Alignment:
| Q |
14 |
catgtttggtgtccgacacgagactgacgcatgtggatacattcaaaggatttattttctcaaaatattatcggtgtcgatgtgttagagttgtgtccac |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
33160561 |
catgtttggtgtccgacacgagactgacgcatgtggctacattcaaaggatttattttctcaaaatattatcggtgtcgatgcgttagagttgtgtccac |
33160462 |
T |
|
| Q |
114 |
cgttctctgctttatagatgcaaattgnnnnnnn-ttgcatattgaaatgctttcttgttattagaatttatgacgttttgtttttaatttgcagtaagg |
212 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33160461 |
cgttctctgctttatagatgcaaattgaaaaaaaattgcatattgaaatgctttcttgttattagaatttatgacgttttgtttttaatttgcagtaagg |
33160362 |
T |
|
| Q |
213 |
attggtatagtctatatactatctgcttttgtgggtgccttaatggcatctctttttcttcaaaacatccctgctgttggttcatctggtgctctatttg |
312 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||| |
|
|
| T |
33160361 |
attggtatagtctatatactatctgcttttgtgggtgccttaatggcatctctttttcttcaaaacatccctgttgttggttcttctggtgctctatttg |
33160262 |
T |
|
| Q |
313 |
gattactaggagcattgctttcagaacttgtttggaactggaaatatcataccaaaaaggtgcttcttagtttttcacctcatagctgtttctcattgtt |
412 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33160261 |
gattactaggagcattgctttcagaacttgtttggaactggaaatatcataccaaaaaggtgcttcttagtttttcacctcatagctgtttctcattgtt |
33160162 |
T |
|
| Q |
413 |
aggcatgattgatttttgatcaattatttctttggtggaaggcagatttcagaagtagcatcattcgtctttatctttgtgtgcaacttcctccttggtt |
512 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33160161 |
aggcatgattgatttttgatcaattttttctttggtggaatgcagatttcagaagtagcatctttcgtctttatctttgtgtgcaacttcctccttggtt |
33160062 |
T |
|
| Q |
513 |
ttctgccttatgtagacaatttttcaagcattggaggttttatatcaggattcctcctgggaac |
576 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
33160061 |
ttctgccttatgtagacaatttttcaagcattggaggttttatatcaggattcctccttggaac |
33159998 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 67 - 104
Target Start/End: Original strand, 25635129 - 25635166
Alignment:
| Q |
67 |
attttctcaaaatattatcggtgtcgatgtgttagagt |
104 |
Q |
| |
|
||||| |||||||||||||||||||||| ||||||||| |
|
|
| T |
25635129 |
attttatcaaaatattatcggtgtcgatatgttagagt |
25635166 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University