View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13915_low_6 (Length: 459)
Name: NF13915_low_6
Description: NF13915
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13915_low_6 |
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Alignment Details
Target: chr6 (Bit Score: 418; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 418; E-Value: 0
Query Start/End: Original strand, 1 - 442
Target Start/End: Complemental strand, 22750959 - 22750518
Alignment:
| Q |
1 |
cacagaaggggtttctctagtgaagatttatggtccaaaagttaaatttgatagaggacctgcaattgcattcaatatatttgattggaaaggcgaaaaa |
100 |
Q |
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||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22750959 |
cacagaaggggtttctctagtgacgatttatggtccaaaagtaaaatttgatagaggacctgcaattgcattcaatatatttgattggaaaggcgaaaaa |
22750860 |
T |
|
| Q |
101 |
gttgaacctgttctcgtgcaaaaactcgctgatagaagtaatatttctattagctatggattgttgcatcatatatggtttgcagataagtatgccgatg |
200 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22750859 |
gttgaacctgttcttgtgcaaaaactcgctgatagaagtaatatttctattagttacggattgttgcatcatatatggtttgcagataagtatgccgatg |
22750760 |
T |
|
| Q |
201 |
aaaagggaagagttctaaaggagaacaaaaagaaagataacgaaaaatttggaataactgttgttactgctgcattaggttttttggctaattttgatga |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22750759 |
aaaagggaagagttctaaaggagaacaaaaagaaagataacgaaaaagttggaataactgttgttactgctgcattaggttttttggctaattttgatga |
22750660 |
T |
|
| Q |
301 |
tatctataagctttggtgttttgttgctaggtttctcgatgctgattttgtcgagaaggagaggtggagatatactgctctgaatcagaaaactgttgaa |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22750659 |
tatctataagctttggtgttttgttgctaggtttctcgatgctgattttgtcgagaaggagaggtggagatatactgctctgaatcagaaaactgttgaa |
22750560 |
T |
|
| Q |
401 |
gtatagcggcgctttaggcatattgctattgttccgcgatat |
442 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||| |
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| T |
22750559 |
gtatagcggcgctttaggcatattgctattgttccgcgatat |
22750518 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 410; E-Value: 0
Query Start/End: Original strand, 1 - 442
Target Start/End: Original strand, 22688109 - 22688550
Alignment:
| Q |
1 |
cacagaaggggtttctctagtgaagatttatggtccaaaagttaaatttgatagaggacctgcaattgcattcaatatatttgattggaaaggcgaaaaa |
100 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22688109 |
cacagaaggggtttctctagtgacgatttatggtccaaaagtaaaatttgatagaggacctgcaattgcattcaatatatttgattggaaaggcgaaaaa |
22688208 |
T |
|
| Q |
101 |
gttgaacctgttctcgtgcaaaaactcgctgatagaagtaatatttctattagctatggattgttgcatcatatatggtttgcagataagtatgccgatg |
200 |
Q |
| |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||| |
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| T |
22688209 |
gttgaacctgttcttgtgcaaaaactcgctgatagaagtaatatttctattagttacggattgttgcatcatatatggtttgcagataagtatgccgata |
22688308 |
T |
|
| Q |
201 |
aaaagggaagagttctaaaggagaacaaaaagaaagataacgaaaaatttggaataactgttgttactgctgcattaggttttttggctaattttgatga |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
22688309 |
aaaagggaagagttctaaaggagaacaaaaagaaagataacgaaaaagttggaataactgttgttactgctgcattaggttttttggctaattttgataa |
22688408 |
T |
|
| Q |
301 |
tatctataagctttggtgttttgttgctaggtttctcgatgctgattttgtcgagaaggagaggtggagatatactgctctgaatcagaaaactgttgaa |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22688409 |
tatctataagctttggtgttttgttgctaggtttctcgatgctgattttgtcgagaaggagaggtggagatatactgctctgaatcagaaaactgttgaa |
22688508 |
T |
|
| Q |
401 |
gtatagcggcgctttaggcatattgctattgttccgcgatat |
442 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
22688509 |
gtatagcggcgctttaggcatattgctattgttccgcgatat |
22688550 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 68; Significance: 3e-30; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 5 - 192
Target Start/End: Original strand, 45958612 - 45958799
Alignment:
| Q |
5 |
gaaggggtttctctagtgaagatttatggtccaaaagttaaatttgatagaggacctgcaattgcattcaatatatttgattggaaaggcgaaaaagttg |
104 |
Q |
| |
|
||||||||| | |||| ||||||||||||||||| | | |||||||||||| ||||| | || |||||| | | |||||||||||| |||||||||| |
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| T |
45958612 |
gaaggggttcccttagtcaagatttatggtccaaagataagatttgatagaggtcctgctttggctttcaatgtttatgattggaaaggtgaaaaagttg |
45958711 |
T |
|
| Q |
105 |
aacctgttctcgtgcaaaaactcgctgatagaagtaatatttctattagctatggattgttgcatcatatatggtttgcagataagta |
192 |
Q |
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| |||||| | || || ||||| |||||||||| ||||| ||| ||||||||||||| |||||||||| ||||||||||||||||| |
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| T |
45958712 |
agcctgttttagtacagaaacttgctgatagaaacaatatatctcttagctatggatttctgcatcatatttggtttgcagataagta |
45958799 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 263 - 402
Target Start/End: Original strand, 45958900 - 45959039
Alignment:
| Q |
263 |
gttactgctgcattaggttttttggctaattttgatgatatctataagctttggtgttttgttgctaggtttctcgatgctgattttgtcgagaaggaga |
362 |
Q |
| |
|
||||||||||||||| | || |||||||||||||| ||| | ||||| || ||| ||||||||||||||| || ||||| |||||||| |||||||||| |
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| T |
45958900 |
gttactgctgcattaagcttcttggctaattttgaagatgtgtataaactatggacttttgttgctaggttccttgatgcagattttgtggagaaggaga |
45958999 |
T |
|
| Q |
363 |
ggtggagatatactgctctgaatcagaaaactgttgaagt |
402 |
Q |
| |
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||||||| || |||||||| ||||||||||| ||||||| |
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| T |
45959000 |
ggtggaggtacactgctcttaatcagaaaacaattgaagt |
45959039 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 319 - 402
Target Start/End: Complemental strand, 42536580 - 42536497
Alignment:
| Q |
319 |
ttttgttgctaggtttctcgatgctgattttgtcgagaaggagaggtggagatatactgctctgaatcagaaaactgttgaagt |
402 |
Q |
| |
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||||||| |||| || || |||||||||||||| || || ||||| |||||||| | |||||| ||||| |||||| ||||||| |
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| T |
42536580 |
ttttgtttctagattccttgatgctgattttgtggaaaaagagagatggagatacattgctctaaatcaaaaaactattgaagt |
42536497 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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