View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13915_low_8 (Length: 406)

Name: NF13915_low_8
Description: NF13915
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13915_low_8
NF13915_low_8
[»] chr5 (12 HSPs)
chr5 (32-394)||(15823478-15823840)
chr5 (117-227)||(15836259-15836369)
chr5 (299-394)||(15837838-15837928)
chr5 (173-305)||(15813433-15813562)
chr5 (248-326)||(15721058-15721136)
chr5 (175-323)||(15723495-15723640)
chr5 (118-227)||(15819204-15819313)
chr5 (280-369)||(15819363-15819452)
chr5 (296-394)||(15839409-15839502)
chr5 (248-305)||(15717236-15717293)
chr5 (175-305)||(15729716-15729844)
chr5 (280-369)||(15836413-15836502)
[»] chr2 (1 HSPs)
chr2 (173-305)||(33100110-33100239)


Alignment Details
Target: chr5 (Bit Score: 255; Significance: 1e-142; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 32 - 394
Target Start/End: Original strand, 15823478 - 15823840
Alignment:
Q  32 agtatgcatggaagaagtcattggaaaaaatcacacaatttattacccgagagcaaccagacgaagatattcaaggcctatatcgaatcaaacaatattt 131  Q
    ||||||||| ||||||||||||||| || |||||||||| |  ||| | |||||||| || |||||  || ||||||||||||| |||||||||||||||    
T  15823478 agtatgcattgaagaagtcattggacaagatcacacaatctcctactccagagcaacaagccgaagtgatacaaggcctatatcaaatcaaacaatattt 15823577  T
Q  132 gtacgatttcggctacctccaacaatatgggccattcagtaatgttctagaccaacaaacaatctcagccattaagatctaccaacaaaatttcaaactc 231  Q
    |||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||    
T  15823578 gtactatttcggctacctccaacaatatgggccattcaataatgttctagaccaacaaacaatgtcagccattaagatctaccaacaaaatttcaatctc 15823677  T
Q  232 caagttactgatggctacctaaacaccgagacttcacaacaaatcttgttaccacgttgtggtgttcctgatattaatttcgagtacagcttcaccaatg 331  Q
    ||||||||| |||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||    
T  15823678 caagttactaatggctacctaaacactgagacttcacaacaaatcttgttaccacgatgtggtgttcctgatatgaatttcgagtacagcttcaccaatg 15823777  T
Q  332 atatgtcgtttcccaaaggaaacaagtggtttcctaagaaaaaacaatatcttacctatgctt 394  Q
    ||| |||||||||||||||||||||||| ||| ||||| ||||| ||||||||||||||||||    
T  15823778 ataagtcgtttcccaaaggaaacaagtgatttactaaggaaaaagaatatcttacctatgctt 15823840  T

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Target: chr5; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 117 - 227
Target Start/End: Original strand, 15836259 - 15836369
Alignment:
Q  117 aatcaaacaatatttgtacgatttcggctacctccaacaatatgggccattcagtaatgttctagaccaacaaacaatctcagccattaagatctaccaa 216  Q
    ||||||||||||||||| |||||||||||||||| |||||| |||||| |||| |||   |||||||||| ||||| ||| |||| |||||| |||||||    
T  15836259 aatcaaacaatatttgtccgatttcggctacctcgaacaatctgggccgttcaataacactctagaccaagaaacagtcttagcccttaagacctaccaa 15836358  T
Q  217 caaaatttcaa 227  Q
    | | |||||||    
T  15836359 cgatatttcaa 15836369  T

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Target: chr5; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 299 - 394
Target Start/End: Original strand, 15837838 - 15837928
Alignment:
Q  299 ctgatattaatttcgagtacagcttcaccaatgatatgtcgtttcccaaaggaaacaagtggtttcctaagaaaaaacaatatcttacctatgctt 394  Q
    ||||||| |||||||||||||||||||     |||| || |||||| |||||||||||||||||| ||||| ||||| ||||||||||||||||||    
T  15837838 ctgatatgaatttcgagtacagcttca-----gataagttgtttccgaaaggaaacaagtggtttactaaggaaaaagaatatcttacctatgctt 15837928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 173 - 305
Target Start/End: Original strand, 15813433 - 15813562
Alignment:
Q  173 atgttctagaccaacaaacaatctcagccattaagatctaccaacaaaatttcaaactccaagttactgatggctacctaaacaccgagacttcacaaca 272  Q
    ||||||||||| |  ||||||| || || ||||||| ||||||||||  |||||| ||||||||||||| |    |||||||||||||||||| |||| |    
T  15813433 atgttctagacgaggaaacaatatccgctattaagacctaccaacaatttttcaatctccaagttactggta---acctaaacaccgagactttacaaaa 15813529  T
Q  273 aatcttgttaccacgttgtggtgttcctgatat 305  Q
    ||||| |||||| || |||||| ||||||||||    
T  15813530 aatctcgttaccgcgatgtggtattcctgatat 15813562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 248 - 326
Target Start/End: Original strand, 15721058 - 15721136
Alignment:
Q  248 acctaaacaccgagacttcacaacaaatcttgttaccacgttgtggtgttcctgatattaatttcgagtacagcttcac 326  Q
    ||||| || ||||||||| ||||| | ||||||||||| | ||||||||||||||||| ||||| ||||||||||||||    
T  15721058 acctagactccgagactttacaactactcttgttaccaagatgtggtgttcctgatatgaattttgagtacagcttcac 15721136  T

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Target: chr5; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 175 - 323
Target Start/End: Original strand, 15723495 - 15723640
Alignment:
Q  175 gttctagaccaacaaacaatctcagccattaagatctaccaacaaaatttcaaactccaagttactgatggctacctaaacaccgagacttcacaacaaa 274  Q
    ||||||||| |  ||||||| || || ||||||| ||||||||||  |||||| ||||||||||||| |    |||||||||||||||||| |||||||     
T  15723495 gttctagacaaggaaacaatatccgctattaagacctaccaacaatttttcaatctccaagttactggtc---acctaaacaccgagactttacaacaat 15723591  T
Q  275 tcttgttaccacgttgtggtgttcctgatattaatttcgagtacagctt 323  Q
    ||| ||| ||| | |||||| |||||||||| || | ||||||| ||||    
T  15723592 tctcgtttccaagatgtggtattcctgatatgaaatacgagtacggctt 15723640  T

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Target: chr5; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 118 - 227
Target Start/End: Original strand, 15819204 - 15819313
Alignment:
Q  118 atcaaacaatatttgtacgatttcggctacctccaacaatatgggccattcagtaatgttctagaccaacaaacaatctcagccattaagatctaccaac 217  Q
    ||||||||||||||| |  |||||||||||||| |||||| |||||| |||| |||   |||||||||| ||||| ||| |||| |||||| ||||||||    
T  15819204 atcaaacaatatttgcaaaatttcggctacctcgaacaatctgggccgttcaataacactctagaccaagaaacagtcttagcccttaagacctaccaac 15819303  T
Q  218 aaaatttcaa 227  Q
     | |||||||    
T  15819304 gatatttcaa 15819313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 280 - 369
Target Start/End: Original strand, 15819363 - 15819452
Alignment:
Q  280 ttaccacgttgtggtgttcctgatattaatttcgagtacagcttcaccaatgatatgtcgtttcccaaaggaaacaagtggtttcctaag 369  Q
    |||||||| ||||||||||||||||| ||||||  ||||  || |||||||||||| |||| ||| ||||||||| | ||||||||||||    
T  15819363 ttaccacgatgtggtgttcctgatatgaatttcacgtacgactccaccaatgatatatcgtatccgaaaggaaaccaatggtttcctaag 15819452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 296 - 394
Target Start/End: Original strand, 15839409 - 15839502
Alignment:
Q  296 ttcctgatattaatttcgagtacagcttcaccaatgatatgtcgtttcccaaaggaaacaagtggtttcctaagaaaaaacaatatcttacctatgctt 394  Q
    |||||||||| |||||||||||||||||||     |||| || |||||| |||  ||||||||||||| || || ||||| ||||||||||||||||||    
T  15839409 ttcctgatatgaatttcgagtacagcttca-----gataagttgtttccgaaactaaacaagtggtttactgaggaaaaagaatatcttacctatgctt 15839502  T

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Target: chr5; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 248 - 305
Target Start/End: Original strand, 15717236 - 15717293
Alignment:
Q  248 acctaaacaccgagacttcacaacaaatcttgttaccacgttgtggtgttcctgatat 305  Q
    ||||| |||||||||||| |||||||||| |||||||||| ||||||||||| |||||    
T  15717236 acctagacaccgagactttacaacaaatcatgttaccacgatgtggtgttcccgatat 15717293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 175 - 305
Target Start/End: Original strand, 15729716 - 15729844
Alignment:
Q  175 gttctagaccaacaaacaatctcagccattaagatctaccaacaaaatttcaaactccaagttactgatggctacctaaacaccgagacttcac-aacaa 273  Q
    ||||||||| |  ||||||| || || |||||||  |||||||||  |||||| ||||||||||||| |    |||||||||||||||||| || || ||    
T  15729716 gttctagacgaggaaacaatatccgctattaagacgtaccaacaatttttcaatctccaagttactggtc---acctaaacaccgagactttacaaaaaa 15729812  T
Q  274 atcttgttaccacgttgtggtgttcctgatat 305  Q
    |||| |||||| || |||||| ||||||||||    
T  15729813 atctcgttaccgcgatgtggtattcctgatat 15729844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 280 - 369
Target Start/End: Original strand, 15836413 - 15836502
Alignment:
Q  280 ttaccacgttgtggtgttcctgatattaatttcgagtacagcttcaccaatgatatgtcgtttcccaaaggaaacaagtggtttcctaag 369  Q
    |||||||| || |||||||||||||  | |||  |||||| ||| ||||||||||| || ||||| ||||||||| | ||||||||||||    
T  15836413 ttaccacgatgcggtgttcctgataggattttgaagtacaacttaaccaatgatatatcttttccgaaaggaaaccaatggtttcctaag 15836502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 173 - 305
Target Start/End: Original strand, 33100110 - 33100239
Alignment:
Q  173 atgttctagaccaacaaacaatctcagccattaagatctaccaacaaaatttcaaactccaagttactgatggctacctaaacaccgagacttcacaaca 272  Q
    ||||||||||| |  ||||||| || || ||||||| ||||||||||  |||||| ||||||||||||| |    |||||||||||||||||| |||| |    
T  33100110 atgttctagacgaggaaacaatatccgctattaagacctaccaacaatttttcaatctccaagttactggta---acctaaacaccgagactttacaaaa 33100206  T
Q  273 aatcttgttaccacgttgtggtgttcctgatat 305  Q
    ||||| |||||| || |||||| ||||||||||    
T  33100207 aatctcgttaccgcgatgtggtattcctgatat 33100239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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