View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13916_high_7 (Length: 458)
Name: NF13916_high_7
Description: NF13916
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13916_high_7 |
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Alignment Details
Target: chr3 (Bit Score: 338; Significance: 0; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 98 - 447
Target Start/End: Complemental strand, 43614976 - 43614627
Alignment:
| Q |
98 |
ctctatgtaccaacaaaataaagattagagaataattaaaataatgtactacgtaccccaataatgaaagcataaaaatcttgaagatggtcataaatga |
197 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
43614976 |
ctctatgtaccgacaaaataaagattagagaataattaaaataatgtactacgtaccccaataatgaaagcataaaaatcttgaagatggttataaatga |
43614877 |
T |
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| Q |
198 |
gaatattactggcacggcttgtttcctggaccatataataaagtattatgtcagggaaaaatcaagtaaaactataggaaagaaaaacagaacatattta |
297 |
Q |
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| T |
43614876 |
gaatattgctggcacggcttgtttcctggaccatataataaagtattatgtcagggaaaaatcaagtaaaactataggaaagaaaaacagaacatattta |
43614777 |
T |
|
| Q |
298 |
tcaacattaccgttcaaatatcaaaaataaagggaccatgataatggctccaatcagctgtctataaaaaacaaacacagatgttttcattcctccgtta |
397 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43614776 |
tcaacattaccgttcaaatatcaaaaataaagggaccatgataatggctccaatcagctgtctataaaaaacaaacacagatgttttcattcctccgtta |
43614677 |
T |
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| Q |
398 |
aacgcggccttggacagcaaagtcatcccagaatatattaattgtagtat |
447 |
Q |
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| T |
43614676 |
aacgcggccttggacagcaaagtcatcccagaatatattaattgtagtat |
43614627 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 151 - 443
Target Start/End: Complemental strand, 43609612 - 43609320
Alignment:
| Q |
151 |
taccccaataatgaaagcataaaaatcttgaagatggtcataaatgagaatattactggcacggcttgtttcctggaccatataataaagtattatgtca |
250 |
Q |
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| T |
43609612 |
taccccaataatgaaagcataaaaatcttgaagatggtcataaatgagaatgttactggcacggcttgtttcctggaccatataataaagtattacgtta |
43609513 |
T |
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| Q |
251 |
gggaaaaatcaagtaaaa-ctataggaaagaaaaacagaacatatttatcaacattaccgttcaaatatcaaaaataaagggaccatgataatggctcca |
349 |
Q |
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| T |
43609512 |
gagaaaa-tcaagtaaaaactataggaaagaaaaacagaacatatttttcaacattacctttcaaatattaaagctaaagggaccatgataatggctcca |
43609414 |
T |
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| Q |
350 |
atcagctgtctataaaaaacaaacacagatgttttcattcctccgttaaacgcggccttggacagcaaagtcatcccagaatatattaattgta |
443 |
Q |
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| T |
43609413 |
atcagttgtctataaaaaacaaacacatatgttttcattcctccgttaaacacagctttggataacaaagtcatcccagaatatattaattgta |
43609320 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 280 - 441
Target Start/End: Complemental strand, 43603050 - 43602887
Alignment:
| Q |
280 |
aaaaacagaacatatttatcaacatt---accgttcaaatatcaaaaataaagggaccatgataatggctccaatcagctgtctataaaaaacaaacaca |
376 |
Q |
| |
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||||||||| ||||||| |||||||| ||||||||||||||||| ||||||||||| || |||||||||||||| ||||| || || ||||||||| |
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| T |
43603050 |
aaaaacagatcatattt-tcaacattgttaccgttcaaatatcaaagccaaagggaccataatcatggctccaatcagttgtctgtagaagacaaacaca |
43602952 |
T |
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| Q |
377 |
gatgttttcattcctccgttaaacgcggccttggacagcaaagtcatcccagaatatattaattg |
441 |
Q |
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|| |||||||||||| |||||||| |||||||||||| ||| |||||||| | |||||||||||| |
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| T |
43602951 |
gaggttttcattccttcgttaaacacggccttggacatcaaggtcatcccggcatatattaattg |
43602887 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 43615073 - 43615009
Alignment:
| Q |
1 |
ccgggcttggaagattttcttctcgctgatgcgtctagagtgcagttcttaaggcagtaatctaa |
65 |
Q |
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| T |
43615073 |
ccgggcttggaagattttcttctcgctgatgcgtctagagtgcagttcttaaggcagtaatctaa |
43615009 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 151 - 234
Target Start/End: Complemental strand, 43603203 - 43603120
Alignment:
| Q |
151 |
taccccaataatgaaagcataaaaatcttgaagatggtcataaatgagaatattactggcacggcttgtttcctggaccatata |
234 |
Q |
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||||| |||| |||||||||||||||||||||||||||| ||||||||||| | ||||||||||||||||| |||||||||||| |
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| T |
43603203 |
tacccaaatagtgaaagcataaaaatcttgaagatggtcttaaatgagaatttcactggcacggcttgtttgctggaccatata |
43603120 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 6 - 55
Target Start/End: Original strand, 42914679 - 42914728
Alignment:
| Q |
6 |
cttggaagattttcttctcgctgatgcgtctagagtgcagttcttaaggc |
55 |
Q |
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| T |
42914679 |
cttggaagctttacttctcgctgatacatctagagtgcagttcttaaggc |
42914728 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 58; Significance: 3e-24; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 3 - 64
Target Start/End: Complemental strand, 32532645 - 32532584
Alignment:
| Q |
3 |
gggcttggaagattttcttctcgctgatgcgtctagagtgcagttcttaaggcagtaatcta |
64 |
Q |
| |
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| T |
32532645 |
gggcttggaagattttcttctcgctgatgcgtctagagtgcagttcttaaggcagtagtcta |
32532584 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 4 - 53
Target Start/End: Complemental strand, 12287851 - 12287802
Alignment:
| Q |
4 |
ggcttggaagattttcttctcgctgatgcgtctagagtgcagttcttaag |
53 |
Q |
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|||||||||||||| || ||||||||||| |||||||||||||||||||| |
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| T |
12287851 |
ggcttggaagatttactcctcgctgatgcttctagagtgcagttcttaag |
12287802 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.00000000001; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 2 - 54
Target Start/End: Original strand, 3499376 - 3499428
Alignment:
| Q |
2 |
cgggcttggaagattttcttctcgctgatgcgtctagagtgcagttcttaagg |
54 |
Q |
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||||||||||||| || ||||||||||||| || ||||||||||||||||||| |
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| T |
3499376 |
cgggcttggaagagttacttctcgctgatgtgtttagagtgcagttcttaagg |
3499428 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 5 - 54
Target Start/End: Complemental strand, 4490585 - 4490536
Alignment:
| Q |
5 |
gcttggaagattttcttctcgctgatgcgtctagagtgcagttcttaagg |
54 |
Q |
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||||||||||||| ||| | | |||||| ||||||||||||||||||||| |
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| T |
4490585 |
gcttggaagatttacttattgttgatgcttctagagtgcagttcttaagg |
4490536 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 6 - 54
Target Start/End: Original strand, 19722754 - 19722802
Alignment:
| Q |
6 |
cttggaagattttcttctcgctgatgcgtctagagtgcagttcttaagg |
54 |
Q |
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|||||||||||| || || | |||||| ||||||||||||||||||||| |
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| T |
19722754 |
cttggaagatttactccttgatgatgcttctagagtgcagttcttaagg |
19722802 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 7 - 53
Target Start/End: Complemental strand, 23705262 - 23705216
Alignment:
| Q |
7 |
ttggaagattttcttctcgctgatgcgtctagagtgcagttcttaag |
53 |
Q |
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||||||||||| ||||| |||||||||||||||||| |||||||||| |
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| T |
23705262 |
ttggaagatttacttcttgctgatgcgtctagagtgtagttcttaag |
23705216 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 2 - 55
Target Start/End: Complemental strand, 10721327 - 10721274
Alignment:
| Q |
2 |
cgggcttggaagattttcttctcgctgatgcgtctagagtgcagttcttaaggc |
55 |
Q |
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|||| ||||||||||| ||||| |||||||| |||||||| ||||||||||||| |
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| T |
10721327 |
cgggtttggaagatttacttcttgctgatgcttctagagtacagttcttaaggc |
10721274 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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