View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13916_high_8 (Length: 423)

Name: NF13916_high_8
Description: NF13916
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13916_high_8
NF13916_high_8
[»] chr5 (8 HSPs)
chr5 (1-304)||(1716444-1716748)
chr5 (190-406)||(7524968-7525185)
chr5 (141-393)||(3643591-3643843)
chr5 (194-302)||(4103249-4103357)
chr5 (223-327)||(5350672-5350777)
chr5 (192-299)||(16037861-16037966)
chr5 (197-261)||(19261152-19261216)
chr5 (244-304)||(13636366-13636426)
[»] chr2 (27 HSPs)
chr2 (111-423)||(30731928-30732242)
chr2 (6-304)||(2841010-2841313)
chr2 (186-406)||(30733984-30734205)
chr2 (187-390)||(32918077-32918281)
chr2 (115-407)||(9020771-9021065)
chr2 (187-390)||(43850046-43850250)
chr2 (134-406)||(9026730-9027003)
chr2 (133-407)||(8973255-8973530)
chr2 (187-406)||(9008018-9008238)
chr2 (134-263)||(9031997-9032126)
chr2 (134-304)||(9016437-9016611)
chr2 (134-304)||(9030342-9030512)
chr2 (192-337)||(19232359-19232504)
chr2 (111-302)||(8988375-8988568)
chr2 (115-271)||(9023371-9023528)
chr2 (134-303)||(8992092-8992262)
chr2 (197-297)||(10763878-10763978)
chr2 (170-257)||(8979302-8979389)
chr2 (115-257)||(8984617-8984760)
chr2 (192-297)||(6471709-6471813)
chr2 (218-301)||(17225659-17225743)
chr2 (194-304)||(35701893-35702003)
chr2 (221-304)||(17275862-17275945)
chr2 (245-327)||(8912989-8913074)
chr2 (350-406)||(8992294-8992349)
chr2 (193-228)||(39814115-39814150)
chr2 (134-219)||(8975639-8975724)
[»] chr1 (21 HSPs)
chr1 (111-423)||(14669582-14669896)
chr1 (179-423)||(14706077-14706322)
chr1 (179-397)||(14708567-14708786)
chr1 (179-415)||(14654222-14654458)
chr1 (179-415)||(14664013-14664249)
chr1 (187-423)||(14683747-14683984)
chr1 (173-398)||(14716274-14716500)
chr1 (190-415)||(14652525-14652752)
chr1 (190-415)||(14662316-14662543)
chr1 (187-384)||(14674478-14674676)
chr1 (187-384)||(14681596-14681794)
chr1 (187-415)||(14679856-14680085)
chr1 (115-327)||(33987994-33988208)
chr1 (187-406)||(38175420-38175640)
chr1 (181-398)||(28366097-28366315)
chr1 (186-406)||(14667007-14667222)
chr1 (187-285)||(14676629-14676727)
chr1 (193-307)||(11872471-11872585)
chr1 (196-268)||(37422175-37422247)
chr1 (187-262)||(28698550-28698625)
chr1 (244-303)||(14703134-14703193)
[»] chr8 (15 HSPs)
chr8 (2-391)||(41841058-41841451)
chr8 (1-263)||(42220880-42221141)
chr8 (186-398)||(10944297-10944510)
chr8 (183-408)||(40054305-40054531)
chr8 (192-388)||(37679757-37679953)
chr8 (187-304)||(44878980-44879097)
chr8 (187-304)||(44880824-44880941)
chr8 (190-390)||(37682057-37682258)
chr8 (112-290)||(42555090-42555269)
chr8 (115-263)||(42091945-42092093)
chr8 (207-302)||(44582870-44582965)
chr8 (187-233)||(42872514-42872560)
chr8 (244-296)||(44583111-44583162)
chr8 (250-304)||(42554655-42554709)
chr8 (341-406)||(42872408-42872471)
[»] chr4 (18 HSPs)
chr4 (114-391)||(11652298-11652576)
chr4 (6-397)||(3461042-3461435)
chr4 (182-397)||(49106428-49106644)
chr4 (181-337)||(50077158-50077315)
chr4 (157-405)||(49108524-49108773)
chr4 (191-302)||(26998735-26998846)
chr4 (191-296)||(26984668-26984773)
chr4 (191-302)||(48205832-48205943)
chr4 (218-304)||(21503706-21503792)
chr4 (192-295)||(41013548-41013651)
chr4 (197-297)||(26982549-26982646)
chr4 (32-78)||(11652615-11652661)
chr4 (226-299)||(35806165-35806238)
chr4 (191-290)||(49533638-49533730)
chr4 (254-297)||(54677590-54677633)
chr4 (247-297)||(34481105-34481155)
chr4 (197-250)||(6431957-6432010)
chr4 (195-231)||(34481155-34481191)
[»] chr6 (8 HSPs)
chr6 (181-346)||(10795840-10796006)
chr6 (181-405)||(10791543-10791768)
chr6 (190-387)||(30521242-30521440)
chr6 (244-387)||(13136608-13136752)
chr6 (192-302)||(8875691-8875803)
chr6 (233-304)||(11333273-11333344)
chr6 (316-389)||(10509478-10509551)
chr6 (197-296)||(21216032-21216131)
[»] chr7 (2 HSPs)
chr7 (190-304)||(27134511-27134625)
chr7 (196-304)||(8128149-8128256)
[»] chr3 (1 HSPs)
chr3 (192-238)||(15758562-15758608)
[»] scaffold0549 (1 HSPs)
scaffold0549 (244-301)||(5450-5507)


Alignment Details
Target: chr5 (Bit Score: 273; Significance: 1e-152; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 1 - 304
Target Start/End: Complemental strand, 1716748 - 1716444
Alignment:
Q  1 gcatgagatttgtccttgttggaagctcaaatcacgtatcctttgtttggaaattggtctttgttggccatgccatgccatacaagagcaagctagtgcc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  1716748 gcatgagatttgtccttgttggaagctcaaatcacgtatcctttgtttggaaattggtctttgttggccatgccatgccatacaagagcaagctagtccc 1716649  T
Q  101 aggcgattgcaaatagtcccacatcgctagttcagaaagcaagtgagtggatgtgagatataaaataagaagcgagtgcatcttttaactcatacctttc 200  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1716648 aggctattgcaaatagtcccacatcgctagttcagaaagcaagtgagtggatgtgagatataaaataagaagcgagtgcatcttttaactcatacctttc 1716549  T
Q  201 tcggccttttggctaagatcaagtgtagtatctgttcttatcggtttaatatctgatatgtggacc-aatggttcacacgatattaaattacttttttga 299  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| || ||||| ||||||||||||||||||||||||| |    
T  1716548 tcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggtccaaatgggtcacacgatattaaattacttttttaa 1716449  T
Q  300 ggggg 304  Q
    |||||    
T  1716448 ggggg 1716444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 190 - 406
Target Start/End: Original strand, 7524968 - 7525185
Alignment:
Q  190 tcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcggtttaatatctgatatgtggaccaatggttcacacgatattaaatt 289  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||  ||||||| |||||||||||||||||    
T  7524968 tcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtgatccaatggatcacacgatattaaatt 7525067  T
Q  290 acttttttgaggggg-gaggccacttaagtagcttgctactaggcttcttgtgtgtcgtcaatgtgttgcactatagcattggtctggcgcaccccacca 388  Q
    ||||||||||||||| |||||| | | ||||||||||| || || ||||  ||||||||| ||| |||||||||| |||| ||   ||||||||||||||    
T  7525068 acttttttgagggggagaggccgccttagtagcttgctgctgggtttctcatgtgtcgtccatgcgttgcactattgcatgggctaggcgcaccccacca 7525167  T
Q  389 attcaagtttaaattttt 406  Q
    |||  ||||||| |||||    
T  7525168 attttagtttaatttttt 7525185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 141 - 393
Target Start/End: Original strand, 3643591 - 3643843
Alignment:
Q  141 aagtgagtggatgtgagatataaaataagaagcgagtgcatcttttaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttctta 240  Q
    ||||||||||||||| |||||||||  |||||||||     |||| || |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3643591 aagtgagtggatgtgggatataaaaacagaagcgagacttactttaaattcatacctttctcggccttttggctaagatcaagtgtagtatctgttctta 3643690  T
Q  241 tcggtttaatatctgatatgtggaccaatggttcacacgatattaaattacttttttgaggggg-gaggccacttaagtagcttgctactaggcttcttg 339  Q
    || |||||||||||||||||||| ||| ||| ||||||||||||||||||||||||| |||||| ||  | |    | |||||||||| | || |||| |    
T  3643691 tcagtttaatatctgatatgtggcccattgggtcacacgatattaaattacttttttaagggggagaaactatcacaatagcttgctattgggtttctcg 3643790  T
Q  340 tgtgtcgtcaatgtgttgcactatagcattggtctggcgcaccccaccaattca 393  Q
     |||| |   |||||||||||||| ||||||| |||||||||||||||||||||    
T  3643791 agtgttgcttatgtgttgcactattgcattgg-ctggcgcaccccaccaattca 3643843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 194 - 302
Target Start/End: Original strand, 4103249 - 4103357
Alignment:
Q  194 acctttctcggccttttggctaagatcaagtgtagtatctgttcttatcggtttaatatctgatatgtggaccaatggttcacacgatattaaattactt 293  Q
    ||||||||| || |||||| ||||||||||||||||||||||||||||| |||||||||||||||||||| ||||| || |||||||||||||||| |||    
T  4103249 acctttctcagcattttggttaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggcccaatagtccacacgatattaaattgctt 4103348  T
Q  294 ttttgaggg 302  Q
    |||| ||||    
T  4103349 tttttaggg 4103357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 223 - 327
Target Start/End: Original strand, 5350672 - 5350777
Alignment:
Q  223 gtgtagtatctgttcttatcggtttaatatctgatatgtggaccaatggttcacacgatattaaattacttttttgagggg-ggaggccacttaagtagc 321  Q
    ||||||||||| || ||||| ||||||||||||||||||||  ||||||| ||||||||||||||||  ||| ||||||||  ||| ||||  |||||||    
T  5350672 gtgtagtatctattgttatcagtttaatatctgatatgtgggacaatggtccacacgatattaaatttatttcttgaggggtagagtccaccaaagtagc 5350771  T
Q  322 ttgcta 327  Q
    ||||||    
T  5350772 ttgcta 5350777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 192 - 299
Target Start/End: Original strand, 16037861 - 16037966
Alignment:
Q  192 atacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcggtttaatatctgatatgtggaccaatggttcacacgatattaaattac 291  Q
    |||| |||||||||| |||  ||||||||||||||||||| |||||||||    ||||||| ||||| |||| | ||||| ||| |||||||||||||||    
T  16037861 atacttttctcggccgtttt-ctaagatcaagtgtagtatttgttcttattatcttaatatttgata-gtggtctaatgggtcaaacgatattaaattac 16037958  T
Q  292 ttttttga 299  Q
    ||||||||    
T  16037959 ttttttga 16037966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 197 - 261
Target Start/End: Complemental strand, 19261216 - 19261152
Alignment:
Q  197 tttctcggccttttggctaagatcaagtgtagtatctgttcttatcggtttaatatctgatatgt 261  Q
    |||||| ||||||||  |||||||||||||| ||| |||||||||| ||| ||||||||||||||    
T  19261216 tttctcagccttttgattaagatcaagtgtaatatatgttcttatccgttaaatatctgatatgt 19261152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 244 - 304
Target Start/End: Original strand, 13636366 - 13636426
Alignment:
Q  244 gtttaatatctgatatgtggaccaatggttcacacgatattaaattacttttttgaggggg 304  Q
    ||||||||||||||||||||| ||| ||| |||||| ||||||||||  || |||||||||    
T  13636366 gtttaatatctgatatgtggatcaacggtccacacggtattaaattaagttcttgaggggg 13636426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 203; Significance: 1e-111; HSPs: 27)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 111 - 423
Target Start/End: Original strand, 30731928 - 30732242
Alignment:
Q  111 aaatagtcccacatcgc-tagttcagaaagcaagtgagtggatgtgagatataaaataagaagcgagtgcatcttttaactcatacctttctcggccttt 209  Q
    ||||||||||||||||  ||||  ||||||||| ||||   ||||  |||||||||  || | ||||  ||||||| |||||||||||||||||||||||    
T  30731928 aaatagtcccacatcgagtagtcaagaaagcaactgagaacatgtctgatataaaagcagcaacgagcccatctttcaactcatacctttctcggccttt 30732027  T
Q  210 tggctaagatcaagtgtagtatctgttcttatcggtttaatatctgatatgtggaccaatggttcacacgatattaaattacttttttga-ggggggagg 308  Q
    ||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  30732028 tggctaagatcaagtgtagtatctgttcttatcagtttaatatctaatatgtggaccaatggttcacacgatattaaattacttttttgagggggggagg 30732127  T
Q  309 ccacttaagtagcttgctactaggcttcttgtgtgtcgtcaatgtgttgcactatagcattggtctggcgcaccccaccaattcaagtttaaatttttat 408  Q
    ||||||  ||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  30732128 ccactttggtagcttgctactaggcttctcgtgtgttgtcaatgtgttgcactatagcattggtctggtgcaccccaccaattcaagtttaaatttttat 30732227  T
Q  409 tctggttcatctctg 423  Q
    |||||||||| ||||    
T  30732228 tctggttcatatctg 30732242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 150; E-Value: 4e-79
Query Start/End: Original strand, 6 - 304
Target Start/End: Complemental strand, 2841313 - 2841010
Alignment:
Q  6 agatttgtccttgttggaagctcaaatcacgtatcctttgtttggaaattggtctttgttggccatgccatgccatacaagagcaagctagtgccaggcg 105  Q
    ||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||  ||||||| || || ||| ||| |      
T  2841313 agatttgtccttgttggaagctcaaatcacgcatcctttgcttggaaattggtctttgttggccatgccatgcg-tacaagaacaggcgagtcccaagtt 2841215  T
Q  106 attgcaaa----tagtcccacatcgctagttca-gaaagcaagtgagtggatgtgagatataaaataagaagcgagtgcatcttttaa--ctcatacctt 198  Q
    ||||   |    ||||||||||||| | ||| | |||||||||||||||||||||||||||||||  ||| |||||  | | ||||||  ||||||||||    
T  2841214 attgtttaagtttagtcccacatcggttgttgaagaaagcaagtgagtggatgtgagatataaaagcagacgcgagcccct-ttttaactctcatacctt 2841116  T
Q  199 tctcggccttttggctaagatcaagtgtagtatctgttcttatcggtttaatatctgatatgtggaccaatggttcacacgatattaaattacttttttg 298  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||  |||||| ||||||||||||||||||||||||||    
T  2841115 tctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggttcaatggatcacacgatattaaattacttttttg 2841016  T
Q  299 aggggg 304  Q
    ||||||    
T  2841015 aggggg 2841010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 146; E-Value: 9e-77
Query Start/End: Original strand, 186 - 406
Target Start/End: Original strand, 30733984 - 30734205
Alignment:
Q  186 taactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcggtttaatatctgatatgtggaccaatggttcacacgatatta 285  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||    
T  30733984 taacttatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccaatggttcacatgatatta 30734083  T
Q  286 aattacttttttgaggggg-gaggccacttaagtagcttgctactaggcttcttgtgtgtcgtcaatgtgttgcactatagcattggtctggcgcacccc 384  Q
    |||||||||||| |||||| || |||| || |||||||||||||||||||||| | |||||| || || |||||||||| |||||||  |||||||||||    
T  30734084 aattactttttttagggggagaagccattttagtagcttgctactaggcttctcgagtgtcgccagtgcgttgcactattgcattggcttggcgcacccc 30734183  T
Q  385 accaattcaagtttaaattttt 406  Q
    |||||| |||||| ||||||||    
T  30734184 accaatccaagttcaaattttt 30734205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 133; E-Value: 5e-69
Query Start/End: Original strand, 187 - 390
Target Start/End: Original strand, 32918077 - 32918281
Alignment:
Q  187 aactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcggtttaatatctgatatgtggaccaatggttcacacgatattaa 286  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||    
T  32918077 aactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccaatggtccacacgatattaa 32918176  T
Q  287 attacttttttgaggggg-gaggccacttaagtagcttgctactaggcttcttgtgtgtcgtcaatgtgttgcactatagcattggtctggcgcacccca 385  Q
    |||||||||||||||||| || |||| |  ||||||||||||||  ||||||  |||||||  |||| |||||||||||||||| || ||||||||| ||    
T  32918177 attacttttttgagggggagaagccattgcagtagcttgctactctgcttctcttgtgtcgctaatgcgttgcactatagcattagtttggcgcacctca 32918276  T
Q  386 ccaat 390  Q
    |||||    
T  32918277 ccaat 32918281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 115 - 407
Target Start/End: Original strand, 9020771 - 9021065
Alignment:
Q  115 agtcccacatcgctagttca-gaaagcaagtgagtggatgtgagatataaaataagaagcgagtgcatcttttaactcatacctttctcggccttttggc 213  Q
    ||||| |||||| | ||||| |||||||||||| ||||||||| ||||||||  | |||||||| ||||||| || |||||| |||||||||||||||||    
T  9020771 agtcctacatcggttgttcatgaaagcaagtgaatggatgtgatatataaaaccataagcgagttcatctttcaattcatacatttctcggccttttggc 9020870  T
Q  214 taagatcaagtgtagtatctgttcttatcggtttaatatctgatatgtggaccaatggttcac-acgatattaaattacttttttgaggg-gggaggcca 311  Q
    |||||||||||||||||||||||||||||  |||||||||||| |||||| ||||||| |||| ||  |||||||||||||||||||||| | |||||||    
T  9020871 taagatcaagtgtagtatctgttcttatcaatttaatatctgagatgtggcccaatgggtcactacagtattaaattacttttttgagggtgagaggcca 9020970  T
Q  312 cttaagtagcttgctactaggcttcttgtgtgtcgtcaatgtgttgcactatagcattggtctggcgcaccccaccaattcaagtttaaattttta 407  Q
     || | || ||||||| | |||||||   |||||  | |||||||||||||| |||| ||| ||| |||||||||||||||||||| |||||||||    
T  9020971 tttcaataacttgctattgggcttctcaagtgtcacctatgtgttgcactattgcataggt-tggtgcaccccaccaattcaagttcaaattttta 9021065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 187 - 390
Target Start/End: Original strand, 43850046 - 43850250
Alignment:
Q  187 aactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcggtttaatatctgatatgtggaccaatggttcacacgatattaa 286  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||  ||||| ||||||||    
T  43850046 aactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggcccaatgagtcacatgatattaa 43850145  T
Q  287 attacttttttgaggggg-gaggccacttaagtagcttgctactaggcttcttgtgtgtcgtcaatgtgttgcactatagcattggtctggcgcacccca 385  Q
    || ||||||||||||||| |||| ||||| | |||||||||| | | |||||  ||||||| | ||| |||||||||| |||| ||  |||||||||| |    
T  43850146 atcacttttttgagggggagaggtcacttcaatagcttgctattggacttctaatgtgtcgcctatgcgttgcactattgcataggcttggcgcacccaa 43850245  T
Q  386 ccaat 390  Q
    |||||    
T  43850246 ccaat 43850250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 134 - 406
Target Start/End: Original strand, 9026730 - 9027003
Alignment:
Q  134 agaaagcaagtgagtggatgtgagatataaaataagaagcgagtgcatcttttaactcatacctttctcggccttttggctaagatcaagtgtagtatct 233  Q
    |||||||||||||  |||||||  ||||||||  | |||||| | ||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  9026730 agaaagcaagtgaagggatgtggtatataaaagcataagcgaattcatctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatct 9026829  T
Q  234 gttcttatcggtttaatatctgatatgtggaccaatggttcac-acgatattaaattacttttttgag-gggggaggccacttaagtagcttgctactag 331  Q
    ||||||||| ||||||||||||||  |||| ||||||| |||| ||  |||||||||||||||||||| ||| ||| ||| || | |||||||||| | |    
T  9026830 gttcttatcagtttaatatctgattagtggcccaatgggtcacaacagtattaaattacttttttgagtgggagagaccatttcaatagcttgctattgg 9026929  T
Q  332 gcttcttgtgtgtcgtcaatgtgttgcactatagcattggtctggcgcaccccaccaattcaagtttaaattttt 406  Q
    | ||||   |||||| | |||  ||||||||| ||||||| ||||| |||||| |||||||||||| ||||||||    
T  9026930 gtttctcaagtgtcgcctatgctttgcactattgcattgg-ctggcacacccctccaattcaagttcaaattttt 9027003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 133 - 407
Target Start/End: Original strand, 8973255 - 8973530
Alignment:
Q  133 cagaaagcaagtgagtggatgtgagatataaaataagaagcgagtgcatcttttaactcatacctttctcggccttttggctaagatcaagtgtagtatc 232  Q
    ||||||| ||||||  |||||||| ||||||||  | |||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  8973255 cagaaagtaagtgaagggatgtgatatataaaagcataagcgagttcatctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatc 8973354  T
Q  233 tgttcttatcggtttaatatctgatatgtggaccaatggttcac-acgatattaaattacttttttgaggggg-gaggccacttaagtagcttgctacta 330  Q
    |||||||||  ||||||||||||||  |||| ||||||| |||| || |||||||||||||||||| |||||| ||| ||| || | |||||||||  |     
T  8973355 tgttcttattagtttaatatctgattagtggcccaatgggtcacaacaatattaaattacttttttaagggggagagaccatttcaatagcttgctgttg 8973454  T
Q  331 ggcttcttgtgtgtcgtcaatgtgttgcactatagcattggtctggcgcaccccaccaattcaagtttaaattttta 407  Q
    || ||||   |||| |   ||| |||||||||| ||| ||  ||||||| ||||||||||||||||| |||||||||    
T  8973455 ggtttctcaagtgttgcatatgcgttgcactattgca-tgagctggcgcgccccaccaattcaagttcaaattttta 8973530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 187 - 406
Target Start/End: Original strand, 9008018 - 9008238
Alignment:
Q  187 aactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcggtttaatatctgatatgtggaccaatggttca-cacgatatta 285  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||  |||| ||||||| |||  ||  |||||    
T  9008018 aactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgattagtggcccaatgggtcataacagtatta 9008117  T
Q  286 aattacttttttgaggggg-gaggccacttaagtagcttgctactaggcttcttgtgtgtcgtcaatgtgttgcactatagcattggtctggcgcacccc 384  Q
    ||||||||||||||||||| ||||||| || | || |||| || | || ||||   |||||| | |||  ||||||||| ||||| | ||||| ||||||    
T  9008118 aattacttttttgagggggagaggccatttcaataacttgttattgggtttctcaagtgtcgcctatgctttgcactattgcattcg-ctggcacacccc 9008216  T
Q  385 accaattcaagtttaaattttt 406  Q
    |||||||| |||| || |||||    
T  9008217 accaattctagttcaatttttt 9008238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 134 - 263
Target Start/End: Original strand, 9031997 - 9032126
Alignment:
Q  134 agaaagcaagtgagtggatgtgagatataaaataagaagcgagtgcatcttttaactcatacctttctcggccttttggctaagatcaagtgtagtatct 233  Q
    |||||||||||||  |||||||  ||||||||  | |||||| | ||||||| |||||||||||||||||||||||||| ||||||||||||||||||||    
T  9031997 agaaagcaagtgaagggatgtggtatataaaagcataagcgaattcatctttcaactcatacctttctcggccttttggttaagatcaagtgtagtatct 9032096  T
Q  234 gttcttatcggtttaatatctgatatgtgg 263  Q
    ||||||||| ||||||||||||||||||||    
T  9032097 gttcttatcagtttaatatctgatatgtgg 9032126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 134 - 304
Target Start/End: Original strand, 9016437 - 9016611
Alignment:
Q  134 agaaagcaagtgagtggatgtgagatataaaataagaagcgagtgcatcttttaactcatacctttctcggccttttggctaagatcaagtgtagtatct 233  Q
    |||||||||||||  |||||||| ||||||||  | |||||||| ||||||||||||||||||||  ||| |||||||||||||||||| ||||||||||    
T  9016437 agaaagcaagtgaaaggatgtgatatataaaagcataagcgagttcatcttttaactcataccttattcgaccttttggctaagatcaaatgtagtatct 9016536  T
Q  234 gttcttatc---ggtttaatatctgatatgtggaccaatggttcac-acgatattaaattacttttttgaggggg 304  Q
    |||||||||    ||||||||||||||  |||| ||||||| |||| ||  ||||||||||||||||||||||||    
T  9016537 gttcttatcagtagtttaatatctgattagtggcccaatgggtcacaacagtattaaattacttttttgaggggg 9016611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 134 - 304
Target Start/End: Original strand, 9030342 - 9030512
Alignment:
Q  134 agaaagcaagtgagtggatgtgagatataaaataagaagcgagtgcatcttttaactcatacctttctcggccttttggctaagatcaagtgtagtatct 233  Q
    |||| ||||||||  |||||||| ||||||||  | |||| ||| ||||||| ||||||||  ||||| |||||||||||||||||||||||||||||||    
T  9030342 agaatgcaagtgaagggatgtgatatataaaagcataagcaagttcatctttcaactcatatttttcttggccttttggctaagatcaagtgtagtatct 9030441  T
Q  234 gttcttatcggtttaatatctgatatgtggaccaatggttcacacgatattaaattacttttttgaggggg 304  Q
    |||||||||  |||||||| ||| | ||||  |||||| ||||||  ||||||||||||||||||||||||    
T  9030442 gttcttatcaatttaatatttgagaagtggctcaatgggtcacacagtattaaattacttttttgaggggg 9030512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 192 - 337
Target Start/End: Complemental strand, 19232504 - 19232359
Alignment:
Q  192 atacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcggtttaatatctgatatgtggaccaatggttcacacgatattaaattac 291  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||| ||||||||||  ||| ||| |||||| ||||||||||||    
T  19232504 atacctttctcggccttttggctaagatcaagtgtaatatctgttcttatcagtttaata-ctgatatgtgacccattgggtcacacaatattaaattac 19232406  T
Q  292 ttttttgaggggg-gaggccacttaagtagcttgctactaggcttct 337  Q
     |||||||||||| || ||||||| | |||||||||| | |||||||    
T  19232405 ctttttgagggggagaagccacttcaatagcttgctattgggcttct 19232359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 111 - 302
Target Start/End: Original strand, 8988375 - 8988568
Alignment:
Q  111 aaatagtcccacatcgctagttca-gaaagcaagtgagtggatgtgagatataaaataagaagcgagtgcatcttttaactcatacctttctcggccttt 209  Q
    ||||||||||||||||   ||||| ||||||||||||  |||||||| ||||||||  | |||||||| ||||||| |||| ||||| |||| |||||||    
T  8988375 aaatagtcccacatcgactgttcaagaaagcaagtgaagggatgtgatatataaaagcataagcgagttcatctttcaacttataccattcttggccttt 8988474  T
Q  210 tggctaagatcaagtgtagtatctgttcttatcggtttaatatctgatatgtggaccaatggttcac-acgatattaaattacttttttgaggg 302  Q
    |||| ||||||||||||||||| |||||||||| ||||||||| ||||  |||   ||||||||| | || |||||||||||||||||||||||    
T  8988475 tggcgaagatcaagtgtagtatttgttcttatcagtttaatatttgatcagtgactcaatggttctcaacaatattaaattacttttttgaggg 8988568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 115 - 271
Target Start/End: Original strand, 9023371 - 9023528
Alignment:
Q  115 agtcccacatcgctagttca-gaaagcaagtgagtggatgtgagatataaaataagaagcgagtgcatcttttaactcatacctttctcggccttttggc 213  Q
    |||||||||||| | ||||| |||| |||||||   ||||||| ||||||||  | |||||||| || |||| |||||||||||||||||||||||||||    
T  9023371 agtcccacatcggttgttcaagaaatcaagtgaagagatgtgatatataaaagcataagcgagtccaactttcaactcatacctttctcggccttttggc 9023470  T
Q  214 taagatcaagtgtagtatctgttcttatcggtttaatatctgatatgtggaccaatgg 271  Q
    ||||||||||||||||||||||||||||  ||||||||||||||  |||| |||||||    
T  9023471 taagatcaagtgtagtatctgttcttattagtttaatatctgattagtggcccaatgg 9023528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 134 - 303
Target Start/End: Original strand, 8992092 - 8992262
Alignment:
Q  134 agaaagcaagtgagtggatgtgagatataaaataagaagcgagtgcatcttttaactcatacctttctcggccttttggctaagatcaagtgtagtatct 233  Q
    |||||| ||||||  |||||||| ||||||||  | |||||||| | ||||||||||||| |||||||| | |||||||||||||||||||||||||| |    
T  8992092 agaaagtaagtgaagggatgtgatatataaaagcataagcgagttcgtcttttaactcatgcctttctcagtcttttggctaagatcaagtgtagtatat 8992191  T
Q  234 gttcttatcggtttaatatctgatatgtggaccaatggttcac-acgatattaaattacttttttgagggg 303  Q
    ||||||||  ||| ||||||||||  |||| ||||||| |||| |  ||||||||||||||||||||||||    
T  8992192 gttcttatgagttcaatatctgattagtggcccaatgggtcacaataatattaaattacttttttgagggg 8992262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 197 - 297
Target Start/End: Complemental strand, 10763978 - 10763878
Alignment:
Q  197 tttctcggccttttggctaagatcaagtgtagtatctgttcttatcggtttaatatctgatatgtggaccaatggttcacacgatattaaattacttttt 296  Q
    |||||||| |||||| ||||||||||||||||||| |||||||||| ||||||||||||||||||||| ||||||| || || |||||||||||||||||    
T  10763978 tttctcggtcttttgactaagatcaagtgtagtatatgttcttatcagtttaatatctgatatgtggatcaatggtccatacaatattaaattacttttt 10763879  T
Q  297 t 297  Q
    |    
T  10763878 t 10763878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 170 - 257
Target Start/End: Original strand, 8979302 - 8979389
Alignment:
Q  170 aagcgagtgcatcttttaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcggtttaatatctgat 257  Q
    |||| ||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||    
T  8979302 aagcaagttcatctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatttgat 8979389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 115 - 257
Target Start/End: Original strand, 8984617 - 8984760
Alignment:
Q  115 agtcccacatcgctagttca-gaaagcaagtgagtggatgtgagatataaaataagaagcgagtgcatcttttaactcatacctttctcggccttttggc 213  Q
    |||||||||||| | ||||| |||| |||||||  |||||||| ||||||||  | |||| ||| ||| ||| |||||||||||||||||||||||||||    
T  8984617 agtcccacatcggttgttcaagaaaacaagtgaagggatgtgatatataaaagcataagcaagttcatatttcaactcatacctttctcggccttttggc 8984716  T
Q  214 taagatcaagtgtagtatctgttcttatcggtttaatatctgat 257  Q
    |||||||||||||||||| |||||||||  ||||||||| ||||    
T  8984717 taagatcaagtgtagtatttgttcttattagtttaatatttgat 8984760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 192 - 297
Target Start/End: Complemental strand, 6471813 - 6471709
Alignment:
Q  192 atacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcggtttaatatctgatatgtggaccaatggttcacacgatattaaattac 291  Q
    |||||||| ||| ||||||||||||||| ||||||||||| |||||||||  ||||||||||||||||  || | ||||| ||||| |||||||| ||||    
T  6471813 atacctttttcgaccttttggctaagat-aagtgtagtatatgttcttattagtttaatatctgatatacggtctaatggatcacatgatattaagttac 6471715  T
Q  292 tttttt 297  Q
    ||||||    
T  6471714 tttttt 6471709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 218 - 301
Target Start/End: Complemental strand, 17225743 - 17225659
Alignment:
Q  218 atcaagtgtagtatctgttctt-atcggtttaatatctgatatgtggaccaatggttcacacgatattaaattacttttttgagg 301  Q
    ||||||||||||||||||| || |||||||||||| ||||||| ||| ||||||  ||| |||||||||||||||||||||||||    
T  17225743 atcaagtgtagtatctgttttttatcggtttaataactgatatctggtccaatgaatcatacgatattaaattacttttttgagg 17225659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 194 - 304
Target Start/End: Original strand, 35701893 - 35702003
Alignment:
Q  194 acctttctcggccttttggctaagatcaagtgtagtatctgttcttatcggtttaatatctgatatgtggaccaatggttcacacgatattaaattactt 293  Q
    |||||||||  | |||||||||||||||||||| |||| |||| ||||  ||||||||| |||||||||| ||||    |||||||||||||  ||||||    
T  35701893 acctttctcaactttttggctaagatcaagtgtggtatttgtttttattagtttaatatttgatatgtgggccaacaagtcacacgatattagtttactt 35701992  T
Q  294 ttttgaggggg 304  Q
    |||||||||||    
T  35701993 ttttgaggggg 35702003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 221 - 304
Target Start/End: Original strand, 17275862 - 17275945
Alignment:
Q  221 aagtgtagtatctgttcttatcggtttaatatctgatatgtggaccaatggttcacacgatattaaattacttttttgaggggg 304  Q
    |||||||||||  ||||||||| ||| ||| | | |||||||| ||||||| |||||||||||| |||||| ||||||||||||    
T  17275862 aagtgtagtatacgttcttatcagttcaatctttaatatgtggtccaatggatcacacgatattgaattacatttttgaggggg 17275945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 245 - 327
Target Start/End: Original strand, 8912989 - 8913074
Alignment:
Q  245 tttaatatctgatatgtggaccaatggttcacac--gatattaaattacttttttgaggggg-gaggccacttaagtagcttgcta 327  Q
    |||||||| | |||||||| ||||||  ||||||  |||||||||||||||||||||||||| ||| ||| || ||||||||||||    
T  8912989 tttaatatataatatgtggtccaatgaatcacacatgatattaaattacttttttgagggggagagaccatttcagtagcttgcta 8913074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 350 - 406
Target Start/End: Original strand, 8992294 - 8992349
Alignment:
Q  350 atgtgttgcactatagcattggtctggcgcaccccaccaattcaagtttaaattttt 406  Q
    |||||||||||||| |||| || |||||||||||| |||||||||||| ||||||||    
T  8992294 atgtgttgcactattgcatggg-ctggcgcacccctccaattcaagttcaaattttt 8992349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 193 - 228
Target Start/End: Original strand, 39814115 - 39814150
Alignment:
Q  193 tacctttctcggccttttggctaagatcaagtgtag 228  Q
    ||||||||||||||||||||||| ||||||||||||    
T  39814115 tacctttctcggccttttggctatgatcaagtgtag 39814150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 134 - 219
Target Start/End: Original strand, 8975639 - 8975724
Alignment:
Q  134 agaaagcaagtgagtggatgtgagatataaaataagaagcgagtgcatcttttaactcatacctttctcggccttttggctaagat 219  Q
    ||||| |||||||  |||||||| ||||||||  | |||||||| || |||| ||||||||  |||||  ||||||||||||||||    
T  8975639 agaaatcaagtgaagggatgtgatatataaaagcataagcgagtccaactttcaactcatatttttctaagccttttggctaagat 8975724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 199; Significance: 1e-108; HSPs: 21)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 111 - 423
Target Start/End: Complemental strand, 14669896 - 14669582
Alignment:
Q  111 aaatagtcccacatcgc-tagttcagaaagcaagtgagtggatgtgagatataaaataagaagcgagtgcatcttttaactcatacctttctcggccttt 209  Q
    ||||||||||||||||  ||||  ||||||||| ||||   ||||  |||||||||  || | ||||  ||||||| |||||||||||||||||||||||    
T  14669896 aaatagtcccacatcgagtagtcaagaaagcaactgagaacatgtctgatataaaagcagcaacgagcccatctttcaactcatacctttctcggccttt 14669797  T
Q  210 tggctaagatcaagtgtagtatctgttcttatcggtttaatatctgatatgtggaccaatggttcacacgatattaaattacttttttgaggggg-gagg 308  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  14669796 tggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccaatggttcacacgatattaaattacttttttgagggggagagg 14669697  T
Q  309 ccacttaagtagcttgctactaggcttcttgtgtgtcgtcaatgtgttgcactatagcattggtctggcgcaccccaccaattcaagtttaaatttttat 408  Q
    | |||| |||||||||||||||  | |||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  14669696 caactttagtagcttgctactaatcctcttgtgtgtcgccaatgtgttgcactatagcattggtctggtgcaccccaccaattcaagtttaaatttttat 14669597  T
Q  409 tctggttcatctctg 423  Q
    |||||||||| ||||    
T  14669596 tctggttcatatctg 14669582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 179 - 423
Target Start/End: Original strand, 14706077 - 14706322
Alignment:
Q  179 catcttttaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcggtttaatatctgatatgtggaccaatggttcacac 278  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  14706077 catctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccaatggttcacac 14706176  T
Q  279 gatattaaattacttttttgaggggg-gaggccacttaagtagcttgctactaggcttcttgtgtgtcgtcaatgtgttgcactatagcattggtctggc 377  Q
    |||||||||||||||||||||||||| ||||| |||| |||||||||||||||  | |||||||||| | | ||||||||||||||| ||||||||||||    
T  14706177 gatattaaattacttttttgagggggagaggcaactttagtagcttgctactaatcctcttgtgtgttgactatgtgttgcactataacattggtctggc 14706276  T
Q  378 gcaccccaccaattcaagtttaaatttttattctggttcatctctg 423  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||    
T  14706277 gcaccccaccaattcaagtttaaatttttattctggttcatatctg 14706322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 179 - 397
Target Start/End: Original strand, 14708567 - 14708786
Alignment:
Q  179 catcttttaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcggtttaatatctgatatgtggaccaatggttcacac 278  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  14708567 catctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccaatggttcacac 14708666  T
Q  279 gatattaaattacttttttgaggggg-gaggccacttaagtagcttgctactaggcttcttgtgtgtcgtcaatgtgttgcactatagcattggtctggc 377  Q
    |||||||||||||||||||||||||| |||| ||||| |||||||||||| |||||||||  ||||||||||||||||||||||| |||||||| |||||    
T  14708667 gatattaaattacttttttgagggggagaggtcactttagtagcttgctattaggcttctcttgtgtcgtcaatgtgttgcactacagcattggcctggc 14708766  T
Q  378 gcaccccaccaattcaagtt 397  Q
    ||||||||||||||||||||    
T  14708767 gcaccccaccaattcaagtt 14708786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 179 - 415
Target Start/End: Complemental strand, 14654458 - 14654222
Alignment:
Q  179 catcttttaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcggtttaatatctgatatgtggaccaatggttcacac 278  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  14654458 catctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccaatggttcacac 14654359  T
Q  279 gatattaaattacttttttgaggggg-gaggccacttaagtagcttgctactaggcttcttgtgtgtcgtcaatgtgttgcactatagcattggtctggc 377  Q
    |||||||||||||||||||||||||| |||||||||| ||||||||||||| || | ||| |||||||| |||| |||||||||||||||||||  ||||    
T  14654358 gatattaaattacttttttgagggggagaggccacttcagtagcttgctacgagtcctctcgtgtgtcgccaatatgttgcactatagcattggcttggc 14654259  T
Q  378 gcaccccaccaattcaagtttaaatttttattctggtt 415  Q
     ||||||||||||||||| |||||||||||||||||||    
T  14654258 tcaccccaccaattcaag-ttaaatttttattctggtt 14654222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 179 - 415
Target Start/End: Complemental strand, 14664249 - 14664013
Alignment:
Q  179 catcttttaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcggtttaatatctgatatgtggaccaatggttcacac 278  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  14664249 catctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccaatggttcacac 14664150  T
Q  279 gatattaaattacttttttgaggggg-gaggccacttaagtagcttgctactaggcttcttgtgtgtcgtcaatgtgttgcactatagcattggtctggc 377  Q
    |||||||||||||||||||||||||| |||||||||| ||||||||||||| || | ||| |||||||| |||| |||||||||||||||||||  ||||    
T  14664149 gatattaaattacttttttgagggggagaggccacttcagtagcttgctacgagtcctctcgtgtgtcgccaatatgttgcactatagcattggcttggc 14664050  T
Q  378 gcaccccaccaattcaagtttaaatttttattctggtt 415  Q
     ||||||||||||||||| |||||||||||||||||||    
T  14664049 tcaccccaccaattcaag-ttaaatttttattctggtt 14664013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 170; E-Value: 4e-91
Query Start/End: Original strand, 187 - 423
Target Start/End: Original strand, 14683747 - 14683984
Alignment:
Q  187 aactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcggtttaatatctgatatgtggaccaatggttcacacgatattaa 286  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  14683747 aactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccaatggttcacacgatattaa 14683846  T
Q  287 attacttttttgaggggg-gaggccacttaagtagcttgctactaggcttcttgtgtgtcgtcaatgtgttgcactatagcattggtctggcgcacccca 385  Q
    |||||||||||||||||| ||||| |||| |||||||||||||||| | ||| |||||||  ||||||||||||||||||||||||  ||| ||||||||    
T  14683847 attacttttttgagggggagaggcaactttagtagcttgctactagtcctctcgtgtgtcaccaatgtgttgcactatagcattggcttggtgcacccca 14683946  T
Q  386 ccaattcaagtttaaatttttattctggttcatctctg 423  Q
    ||||| |||  |||||||||||||||||||||| ||||    
T  14683947 ccaatccaaagttaaatttttattctggttcatatctg 14683984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 163; E-Value: 6e-87
Query Start/End: Original strand, 173 - 398
Target Start/End: Original strand, 14716274 - 14716500
Alignment:
Q  173 cgagtgcatcttttaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcggtttaatatctgatatgtggaccaatggt 272  Q
    ||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||    
T  14716274 cgagttcatctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctaatatgtggaccaatggt 14716373  T
Q  273 tcacacgatattaaattacttttttgaggggg-gaggccacttaagtagcttgctactaggcttcttgtgtgtcgtcaatgtgttgcactatagcattgg 371  Q
    |||||||||||||||||||||||||||||||| ||||| |||| |||||||||||||||  | ||| |||||||| ||||||||||||||||||||||||    
T  14716374 tcacacgatattaaattacttttttgagggggagaggcaactttagtagcttgctactaatcctctcgtgtgtcgccaatgtgttgcactatagcattgg 14716473  T
Q  372 tctggcgcaccccaccaattcaagttt 398  Q
      ||| |||||||||||||||||||||    
T  14716474 cttggtgcaccccaccaattcaagttt 14716500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 190 - 415
Target Start/End: Original strand, 14652525 - 14652752
Alignment:
Q  190 tcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcggtttaatatctgatatgtggaccaatggttcacacgatattaaatt 289  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||    
T  14652525 tcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccaatggtccacacgatattaaatt 14652624  T
Q  290 acttttttgaggggg-gaggccacttaagtagcttgctactaggcttcttgtgtgtcgtcaatgtgttgcactatagcattggtctggcgcaccccacca 388  Q
    ||||||||||||||| || |||| || |||||||||||||||||||||| | ||||   ||||| ||||||||||||||||||  |||||||||||||||    
T  14652625 acttttttgagggggagaagccattttagtagcttgctactaggcttctcgagtgtttccaatgcgttgcactatagcattggcgtggcgcaccccacca 14652724  T
Q  389 attcaagtttaaat-ttttattctggtt 415  Q
    ||||||||| |||| ||||||| |||||    
T  14652725 attcaagttcaaatattttattttggtt 14652752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 190 - 415
Target Start/End: Original strand, 14662316 - 14662543
Alignment:
Q  190 tcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcggtttaatatctgatatgtggaccaatggttcacacgatattaaatt 289  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||    
T  14662316 tcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccaatggtccacacgatattaaatt 14662415  T
Q  290 acttttttgaggggg-gaggccacttaagtagcttgctactaggcttcttgtgtgtcgtcaatgtgttgcactatagcattggtctggcgcaccccacca 388  Q
    ||||||||||||||| || |||| || |||||||||||||||||||||| | ||||   ||||| ||||||||||||||||||  |||||||||||||||    
T  14662416 acttttttgagggggagaagccattttagtagcttgctactaggcttctcgagtgtttccaatgcgttgcactatagcattggcgtggcgcaccccacca 14662515  T
Q  389 attcaagtttaaat-ttttattctggtt 415  Q
    ||||||||| |||| ||||||| |||||    
T  14662516 attcaagttcaaatattttattttggtt 14662543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 143; E-Value: 5e-75
Query Start/End: Original strand, 187 - 384
Target Start/End: Original strand, 14674478 - 14674676
Alignment:
Q  187 aactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcggtttaatatctgatatgtggaccaatggttcacacgatattaa 286  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||    
T  14674478 aactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccaatggttcacatgatattaa 14674577  T
Q  287 attacttttttgaggggg-gaggccacttaagtagcttgctactaggcttcttgtgtgtcgtcaatgtgttgcactatagcattggtctggcgcacccc 384  Q
    |||||||||||||||||| || |||| || |||||||||||||||||||||| | |||||  |||||| |||||||||||||||||| |||| ||||||    
T  14674578 attacttttttgagggggagaagccattttagtagcttgctactaggcttctcgggtgtcaacaatgtattgcactatagcattggtttggcacacccc 14674676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 143; E-Value: 5e-75
Query Start/End: Original strand, 187 - 384
Target Start/End: Original strand, 14681596 - 14681794
Alignment:
Q  187 aactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcggtttaatatctgatatgtggaccaatggttcacacgatattaa 286  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  14681596 aacttatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccaatggttcacacgatattaa 14681695  T
Q  287 attacttttttgaggggg-gaggccacttaagtagcttgctactaggcttcttgtgtgtcgtcaatgtgttgcactatagcattggtctggcgcacccc 384  Q
    |||||||||||||||||| || |||| || |||||||||||||||||||||| | |||||  |||||| |||||||||||||||||| |||| ||||||    
T  14681696 attacttttttgagggggagaagccattttagtagcttgctactaggcttctcgggtgtcaacaatgtattgcactatagcattggtttggcacacccc 14681794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 187 - 415
Target Start/End: Original strand, 14679856 - 14680085
Alignment:
Q  187 aactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcggtttaatatctgatatgtggaccaatggttcacacgatattaa 286  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||    
T  14679856 aactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccaatggttcacatgatattaa 14679955  T
Q  287 attacttttttgaggggg-gaggccacttaagtagcttgctactaggcttcttgtgtgtcgtcaatgtgttgcactatagcattggtctggcgcacccca 385  Q
    |||||||||||||||||| || ||||  | |||||||||||||||||||||||| |||| | ||||| ||||||||| ||||||||  |||||||||| |    
T  14679956 attacttttttgagggggagaagccatattagtagcttgctactaggcttcttgagtgttgccaatgcgttgcactacagcattggcttggcgcacccga 14680055  T
Q  386 ccaattcaagtttaaatttttattctggtt 415  Q
    |||||   ||| ||||||||| || |||||    
T  14680056 ccaatctgagtctaaattttttttttggtt 14680085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 115 - 327
Target Start/End: Original strand, 33987994 - 33988208
Alignment:
Q  115 agtcccacatcgctagttca-gaaagcaagtgagtggatgtgagatataaaataagaagcgagtgcatcttttaactcatacctttctcggccttttggc 213  Q
    |||||||||||| | ||||| ||||||||||||  ||| |||| ||||||||  | ||| |||| ||||||| |||||||||||||||||||||||||||    
T  33987994 agtcccacatcggttgttcaagaaagcaagtgaagggaggtgatatataaaagcataagtgagtccatctttcaactcatacctttctcggccttttggc 33988093  T
Q  214 taagatcaagtgtagtatctgttcttatcggtttaatatctgatatgtggaccaatggttcacacgatattaaattacttttttgaggggg-gaggccac 312  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||  |||||  ||||||||||||||||||||||||| |||||| |||||||     
T  33988094 taagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggctcaatgagtcacacgatattaaattacttttttaagggggagaggccat 33988193  T
Q  313 ttaagtagcttgcta 327  Q
    || | ||||||||||    
T  33988194 ttcaatagcttgcta 33988208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 187 - 406
Target Start/End: Complemental strand, 38175640 - 38175420
Alignment:
Q  187 aactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcggtttaatatctgatatgtggaccaatggttcacacgatattaa 286  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||  ||||||| ||||||||||||||    
T  38175640 aactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtgttccaatgggtcacacgatattaa 38175541  T
Q  287 attacttttttgaggggg-gaggccacttaagtagcttgctactaggcttcttgtgtgtcgtcaatgtgttgcactatagcattggtctggcgcacccca 385  Q
    |||||||||||||||||| ||  |||| | ||||||||||| || || || |  |||||||   ||||||||||||||  |||  | |||||||||||||    
T  38175540 attacttttttgagggggagaaaccacctcagtagcttgctgctgggtttatcatgtgtcgcttatgtgttgcactattacataagcctggcgcacccca 38175441  T
Q  386 ccaattcaagtttaaattttt 406  Q
    ||||||| |||| || |||||    
T  38175440 ccaattctagttcaatttttt 38175420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 181 - 398
Target Start/End: Complemental strand, 28366315 - 28366097
Alignment:
Q  181 tcttttaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcggtttaatatctgatatgtg-gaccaatggttcacacg 279  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||   ||||||| |||||||    
T  28366315 tctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtgaccccaatgggtcacacg 28366216  T
Q  280 atattaaattacttttttgaggggg-gaggccacttaagtagcttgctactaggcttcttgtgtgtcgtcaatgtgttgcactatagcattggtctggcg 378  Q
    |||||||||||||||||| |||||| ||| | | |  |||||||||||||||||  | |  ||||||||  ||| |||||||||| ||||||| ||||||    
T  28366215 atattaaattacttttttaagggggagagactattatagtagcttgctactaggtctttcatgtgtcgtttatgcgttgcactattgcattgg-ctggcg 28366117  T
Q  379 caccccaccaattcaagttt 398  Q
    || |||||||||| ||||||    
T  28366116 catcccaccaattaaagttt 28366097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 186 - 406
Target Start/End: Complemental strand, 14667222 - 14667007
Alignment:
Q  186 taactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcggtttaatatctgatatgtggaccaatggttcacacgatatta 285  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||| |||||||||||||||||| |||||||    
T  14667222 taactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttattagtttaatatctgatacgtggaccaatggttcacatgatatta 14667123  T
Q  286 aattacttttttgaggggg-gaggcca-cttaagtagcttgctactaggcttcttgtgtgtcgtcaatgtgttgcactatagcattggtctggcgcaccc 383  Q
    |||||||||||  |||||| || ||||  || |||||       | |||||||| | |||| | || |||||||||||||||||||||  ||||||||||    
T  14667122 aattactttttctagggggagaagccatttttagtag-------caaggcttctcgagtgttgccagtgtgttgcactatagcattggcttggcgcaccc 14667030  T
Q  384 caccaattcaagtttaaattttt 406  Q
    ||||||| |||| | ||||||||    
T  14667029 caccaatccaagctcaaattttt 14667007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 187 - 285
Target Start/End: Original strand, 14676629 - 14676727
Alignment:
Q  187 aactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcggtttaatatctgatatgtggaccaatggttcacacgatatta 285  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  14676629 aactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccaatggttcacacgatatta 14676727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 193 - 307
Target Start/End: Complemental strand, 11872585 - 11872471
Alignment:
Q  193 tacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcggtttaatatctgatatgtggaccaatggttcacacgatattaaattact 292  Q
    ||||||||||||||||||| ||||||||||||||| |||||||||||||| ||||||||| ||||||||||  |||||| ||||||||||||||||||||    
T  11872585 tacctttctcggccttttgactaagatcaagtgtactatctgttcttatcagtttaatatatgatatgtggttcaatgggtcacacgatattaaattact 11872486  T
Q  293 tttttgaggggggag 307  Q
    ||||| | |||||||    
T  11872485 ttttttaagggggag 11872471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 196 - 268
Target Start/End: Original strand, 37422175 - 37422247
Alignment:
Q  196 ctttctcggccttttggctaagatcaagtgtagtatctgttcttatcggtttaatatctgatatgtggaccaa 268  Q
    ||||||||||||||||||||||||||||||||| || |||||||||| |||||||||||||||||||| ||||    
T  37422175 ctttctcggccttttggctaagatcaagtgtagcatatgttcttatcagtttaatatctgatatgtggtccaa 37422247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 187 - 262
Target Start/End: Original strand, 28698550 - 28698625
Alignment:
Q  187 aactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcggtttaatatctgatatgtg 262  Q
    ||||||||| |||||||| ||||||||||||||||| |||||||| | || |||||  |||||||| |||||||||    
T  28698550 aactcatacatttctcggtcttttggctaagatcaaatgtagtatatatttttatcaatttaatatttgatatgtg 28698625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 244 - 303
Target Start/End: Original strand, 14703134 - 14703193
Alignment:
Q  244 gtttaatatctgatatgtggaccaatggttcacacgatattaaattacttttttgagggg 303  Q
    ||||||||| |||||||||||||||| || |||||||||||||||||  ||||| |||||    
T  14703134 gtttaatatttgatatgtggaccaatagtccacacgatattaaattaaattttttagggg 14703193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 174; Significance: 2e-93; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 2 - 391
Target Start/End: Complemental strand, 41841451 - 41841058
Alignment:
Q  2 catgagatttgtccttgttggaagctcaaatcacgtatcctttgtttggaaattggtctttgttggccatgccatgccatacaagagcaagctagtgcca 101  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||| |||||||||||||||||  ||||||| | |   ||| |||    
T  41841451 catgagatttgtccttgttggaagctcaaatcacgtatcctttgcttggaatttggtctctgttggccatgccatgcg-tacaagaaccattgagtccca 41841353  T
Q  102 ggcgattg-caaa---tagtcccacatcgctagttca-gaaagcaagtgagtggatgtgagatataaaataagaagcgagtgcatcttttaactcatacc 196  Q
     |   ||| | ||   ||||||||||||||| ||| | |||||||||||||||||||||||||||||||  |||||| |   ||||||| ||||||||||    
T  41841352 agttgttgtctaagtttagtcccacatcgctcgtttaagaaagcaagtgagtggatgtgagatataaaagcagaagccaacccatctttcaactcatacc 41841253  T
Q  197 tttctcggccttttggctaagatcaagtgtagtatctgttcttatcggtttaatatctgatatgtggaccaatggttcacacgatattaaattacttttt 296  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||| ||||||||||||||||||||||||    
T  41841252 tttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggtccaatgggtcacacgatattaaattacttttt 41841153  T
Q  297 tga-ggggggaggccacttaagtagcttgctactaggcttcttgtgtgtcgtcaatgtgttgcactatagcattggtctggcgcaccccaccaatt 391  Q
    ||| |||| || |||||   | |||||||||| | ||||||| | |||||| | |||||||||||||| ||| ||| ||||||||||||| |||||    
T  41841152 tgatggggagaagccaccccaatagcttgctattgggcttctcgagtgtcgcctatgtgttgcactattgca-tgggctggcgcaccccatcaatt 41841058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 1 - 263
Target Start/End: Complemental strand, 42221141 - 42220880
Alignment:
Q  1 gcatgagatttgtccttgttggaagctcaaatcacgtatcctttgtttggaaattggtctttgttggccatgccatgccatacaagagcaagctagtgcc 100  Q
    ||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||| ||    
T  42221141 gcatgagatttgtccttgttggaagctcaaatcatatatcctttgtttggaaattggtctttgttggccatgtcatgccatacaagaacaagctagtccc 42221042  T
Q  101 aggcgattgcaaatagtcccacatcgctagttc-agaaagcaagtgagtggatgtgagatataaaataagaagcgagtgcatcttttaactcataccttt 199  Q
    | || |||||||||||||||||||||||||||| |||||| ||||| |||||| ||||||||||||  ||| |||||   | |||| ||||||||| |||    
T  42221041 aagctattgcaaatagtcccacatcgctagttctagaaagtaagtg-gtggatatgagatataaaagcagaggcgagcatagctttcaactcatacattt 42220943  T
Q  200 ctcggccttttggctaagatcaagtgtagtatctgttcttatcggtttaatatctgatatgtgg 263  Q
     |||| |||||||||||||||||||||||||||| |||||||  ||||||||||||||||||||    
T  42220942 ttcggtcttttggctaagatcaagtgtagtatct-ttcttattagtttaatatctgatatgtgg 42220880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 146; E-Value: 9e-77
Query Start/End: Original strand, 186 - 398
Target Start/End: Complemental strand, 10944510 - 10944297
Alignment:
Q  186 taactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcggtttaatatctgatatgtggaccaatggttcacacgatatta 285  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||| |||||||||||||||||||    
T  10944510 taactcatacctttctcgaccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatcttatatgtggacaaatggttcacacgatatta 10944411  T
Q  286 aattacttttttga-ggggggaggccacttaagtagcttgctactaggcttcttgtgtgtcgtcaatgtgttgcactatagcattggtctggcgcacccc 384  Q
    |||||||||||||| |||| || |||| || |||||||||||||||||||||||| |||||   | || ||||||||||||||||||| |||||||||||    
T  10944410 aattacttttttgatggggagaagccattttagtagcttgctactaggcttcttgagtgtcactattgcgttgcactatagcattggtttggcgcacccc 10944311  T
Q  385 accaattcaagttt 398  Q
    ||||||||||||||    
T  10944310 accaattcaagttt 10944297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 183 - 408
Target Start/End: Original strand, 40054305 - 40054531
Alignment:
Q  183 ttttaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcggtttaatatctgatatgtggaccaatggttcacacgata 282  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||| ||| ||||||    
T  40054305 ttttaattcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggcccaatgggtcatacgata 40054404  T
Q  283 ttaaattacttttttgaggggg-gaggccacttaagtagcttgctactaggcttcttgtgtgtcgtcaatgtgttgcactatagcattggtctggcgcac 381  Q
    |||||||||||||||||||||| |||||||||| | |||||||||| | ||||||||  ||||||   |||||||||||||| ||||  |  ||||||||    
T  40054405 ttaaattacttttttgagggggagaggccacttcaatagcttgctattgggcttcttaagtgtcgcttatgtgttgcactattgcataagcttggcgcac 40054504  T
Q  382 cccaccaattcaagtttaaatttttat 408  Q
    ||||||||| | |||| || |||||||    
T  40054505 cccaccaatactagttcaattttttat 40054531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 192 - 388
Target Start/End: Original strand, 37679757 - 37679953
Alignment:
Q  192 atacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcggtttaatatctgatatgtggaccaatggttcacacgatattaaattac 291  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||| |||  |||||||||||      
T  37679757 atacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtgggccaatggtccacttgatattaaattta 37679856  T
Q  292 ttttttgaggggg-gaggccacttaagtagcttgctactaggcttcttgtgtgtcgtcaatgtgttgcactatagcattggtctggcgcaccccacca 388  Q
    ||| ||||||||| ||||||||    ||||||||||| | ||| || | ||||||| |  ||||||||||||||||| ||||||||||||||||||||    
T  37679857 tttattgagggggagaggccaccacggtagcttgctattgggcctc-tctgtgtcgcctttgtgttgcactatagcaatggtctggcgcaccccacca 37679953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 187 - 304
Target Start/End: Original strand, 44878980 - 44879097
Alignment:
Q  187 aactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcggtttaatatctgatatgtggaccaatggttcacacgatattaa 286  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||  |||||| ||||| ||||||||    
T  44878980 aactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggctcaatgggtcacatgatattaa 44879079  T
Q  287 attacttttttgaggggg 304  Q
    ||||||||||||||||||    
T  44879080 attacttttttgaggggg 44879097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 187 - 304
Target Start/End: Complemental strand, 44880941 - 44880824
Alignment:
Q  187 aactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcggtttaatatctgatatgtggaccaatggttcacacgatattaa 286  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||  |||||| ||||| ||||||||    
T  44880941 aactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggctcaatgggtcacatgatattaa 44880842  T
Q  287 attacttttttgaggggg 304  Q
    ||||||||||||||||||    
T  44880841 attacttttttgaggggg 44880824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 190 - 390
Target Start/End: Original strand, 37682057 - 37682258
Alignment:
Q  190 tcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcggtttaatatctgatatgtggaccaatggttcacacgatattaaatt 289  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||| ||||||||||||||||    
T  37682057 tcatacatttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtgggccaatggtccacacgatattaaatt 37682156  T
Q  290 acttttttgagg-ggggaggccacttaagtagcttgctactaggcttcttgtgtgtcgtcaatgtgttgcactatagcattggtctggcgcaccccacca 388  Q
      |||||| |||  | ||| ||||  || |||||||||| ||||  |||   ||||| ||  |  |||||||||| ||||||||||||||| ||||||||    
T  37682157 tgtttttttaggatgagagtccaccaaaatagcttgctattaggtctctcaagtgtcatctttacgttgcactattgcattggtctggcgcgccccacca 37682256  T
Q  389 at 390  Q
    ||    
T  37682257 at 37682258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 112 - 290
Target Start/End: Complemental strand, 42555269 - 42555090
Alignment:
Q  112 aatagtcccacatcgctagttca-gaaagcaagtgagtggatgtgagatataaaataagaagcgagtgcatcttttaactcatacctttctcggcctttt 210  Q
    ||||||||||||||| ||||| | |||||||||||||||||||||| ||||||||   ||||  ||  || |||| ||||||||||||||| |  |||||    
T  42555269 aatagtcccacatcgatagtttaagaaagcaagtgagtggatgtgatatataaaacctgaaggtagctcaactttcaactcatacctttcttgatctttt 42555170  T
Q  211 ggctaagatcaagtgtagtatctgttcttatcggtttaatatctgatatgtggaccaatggttcacacgatattaaatta 290  Q
    ||||||||||||||| || ||||||| ||||| ||||||||| ||||||||||  |||||  ||||||||||||||||||    
T  42555169 ggctaagatcaagtgcagaatctgtttttatcagtttaatatttgatatgtggttcaatgaatcacacgatattaaatta 42555090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 115 - 263
Target Start/End: Original strand, 42091945 - 42092093
Alignment:
Q  115 agtcccacatcgctagttca-gaaagcaagtgagtggatgtgagatataaaataagaagcgagtgcatcttttaactcatacctttctcggccttttggc 213  Q
    |||||||||||| ||||||| |||||||| ||||||||  ||||||||||||  |||||| |   ||||||| |||||||||||||||  |||||||| |    
T  42091945 agtcccacatcggtagttcaagaaagcaactgagtggacctgagatataaaaccagaagcaaactcatctttaaactcatacctttctttgccttttg-c 42092043  T
Q  214 taagatcaagtgtagtatctgttcttatcggtttaatatctgatatgtgg 263  Q
    ||| || ||||||| ||| |||||||||| ||||||||||||||||||||    
T  42092044 taaaattaagtgtaatatttgttcttatcagtttaatatctgatatgtgg 42092093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 207 - 302
Target Start/End: Original strand, 44582870 - 44582965
Alignment:
Q  207 ttttggctaagatcaagtgtagtatctgttcttatcggtttaatatctgatatgtggaccaatggttcacacgatattaaattacttttttgaggg 302  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||| |  |||||| |   | ||||||||||||||||||||||||    
T  44582870 ttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtagctcaatggattctatgatattaaattacttttttgaggg 44582965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 187 - 233
Target Start/End: Complemental strand, 42872560 - 42872514
Alignment:
Q  187 aactcatacctttctcggccttttggctaagatcaagtgtagtatct 233  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||    
T  42872560 aactcatacctttctcggccttttggctaagattaagtgtagtatct 42872514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 244 - 296
Target Start/End: Original strand, 44583111 - 44583162
Alignment:
Q  244 gtttaatatctgatatgtggaccaatggttcacacgatattaaattacttttt 296  Q
    ||||||||||||||||||| || |||||| |||||||||||||||||||||||    
T  44583111 gtttaatatctgatatgtgaac-aatggtacacacgatattaaattacttttt 44583162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 250 - 304
Target Start/End: Complemental strand, 42554709 - 42554655
Alignment:
Q  250 tatctgatatgtggaccaatggttcacacgatattaaattacttttttgaggggg 304  Q
    ||||||||||||||  |||||  | |||||||||||||||| |||||||||||||    
T  42554709 tatctgatatgtgggtcaatgaattacacgatattaaattatttttttgaggggg 42554655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 341 - 406
Target Start/End: Complemental strand, 42872471 - 42872408
Alignment:
Q  341 gtgtcgtcaatgtgttgcactatagcattggtctggcgcaccccaccaattcaagtttaaattttt 406  Q
    |||||||| |||||||||||||| ||| ||| ||| ||||||||||||||| |||||||| |||||    
T  42872471 gtgtcgtctatgtgttgcactattgca-tgggctgacgcaccccaccaatt-aagtttaatttttt 42872408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 164; Significance: 2e-87; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 114 - 391
Target Start/End: Complemental strand, 11652576 - 11652298
Alignment:
Q  114 tagtcccacatcgctagttca-gaaagcaagtgagtggatgtgagatataaaataagaagcgagtgcatcttttaactcatacctttctcggccttttgg 212  Q
    ||||||||||||||| ||| | |||||||||||||||||||||||||||||||  |||||| |   ||||||||||||||||||||||||||||||||||    
T  11652576 tagtcccacatcgctcgtttaagaaagcaagtgagtggatgtgagatataaaaccagaagccaacccatcttttaactcatacctttctcggccttttgg 11652477  T
Q  213 ctaagatcaagtgtagtatctgttcttatcggtttaatatctgatatgtggaccaatggttcacacgatattaaattacttttttgaggggg-gaggcca 311  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||| |||||||||||||||||| ||||||||||||| || ||||    
T  11652476 ctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggcccaatgggtcacacgatattaaattatttttttgagggggagaagcca 11652377  T
Q  312 cttaagtagcttgctactaggcttcttgtgtgtcgtcaatgtgttgcactatagcattggtctggcgcaccccaccaatt 391  Q
    ||  | |||||||||| | ||||||||| |||||| | |||||||||||||| ||| ||| |||||||||||||||||||    
T  11652376 ctccaatagcttgctattgggcttcttgagtgtcgcctatgtgttgcactattgca-tgggctggcgcaccccaccaatt 11652298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 133; E-Value: 5e-69
Query Start/End: Original strand, 6 - 397
Target Start/End: Complemental strand, 3461435 - 3461042
Alignment:
Q  6 agatttgtccttgttggaagctcaaatcacgtatcctttgtttggaaattggtctttgttggccatgccatgccatacaagagcaagctagtgccaggcg 105  Q
    ||||||||||||||||||||||||||||| |||||||||| ||| || ||||||| ||||||| |||||||||  | ||||| | ||  ||| ||| |      
T  3461435 agatttgtccttgttggaagctcaaatcatgtatcctttgcttgaaagttggtctctgttggctatgccatgcg-tgcaagaactag--agtcccaagtt 3461339  T
Q  106 attg-caaa---tagtcccacatcgctagttca-gaaagcaagtgagtggatgtgagatataaaataagaagcgagtgcatcttttaactcatacctttc 200  Q
     ||| | ||   ||||||||||||||| ||  | ||||||||||||||||||| |||||||||||  | |||||||    ||||| || |||||||||||    
T  3461338 gttgtctaagtttagtcccacatcgcttgtggaagaaagcaagtgagtggatgggagatataaaaccataagcgagcatctctttcaattcatacctttc 3461239  T
Q  201 tcggccttttggctaagatcaagtgtagtatctgttcttatcggtttaatatctgatatgtggaccaatggttcacacgatattaaattacttttttgag 300  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||   |||||| ||||||||||||||||||||||||| ||    
T  3461238 tcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtgactcaatgggtcacacgatattaaattacttttttaag 3461139  T
Q  301 gggg-gaggccacttaagtagcttgctactaggcttcttgtgtgtcgtcaatgtgttgcactatagcattggtctggcgcaccccaccaattcaagtt 397  Q
    |||| || |||| || | |||||||||| | || |||| | |||||||| ||| |||||||||| |||| || ||||| |||||||||||| ||||||    
T  3461138 ggggagaagccatttcaatagcttgctattgggtttctcgagtgtcgtctatgcgttgcactattgcatagg-ctggcacaccccaccaatacaagtt 3461042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 121; E-Value: 7e-62
Query Start/End: Original strand, 182 - 397
Target Start/End: Complemental strand, 49106644 - 49106428
Alignment:
Q  182 cttttaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcggtttaatatctgatatgtggaccaatggttcacacgat 281  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||| |||||||||    
T  49106644 ctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggtccaatggatcacacgat 49106545  T
Q  282 attaaattacttttttgaggggg-gaggccacttaagtagcttgctactaggcttcttgtgtgtcgtcaatgtgttgcactatagcattggtctggcgca 380  Q
    ||||||||||||||||||||||| || | ||| | |||||||||||||| |  ||||| |||||||   |||||||||||||| ||||  |   ||||||    
T  49106544 attaaattacttttttgagggggagaagtcaccttagtagcttgctactggatttcttatgtgtcgctcatgtgttgcactattgcatgagctaggcgca 49106445  T
Q  381 ccccaccaattcaagtt 397  Q
    |||||||||||| ||||    
T  49106444 ccccaccaattctagtt 49106428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 181 - 337
Target Start/End: Complemental strand, 50077315 - 50077158
Alignment:
Q  181 tcttttaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcggtttaatatctgatatgtggaccaatggttcacacga 280  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||  ||||||||||||| ||    
T  50077315 tctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtgttccaatggttcacatga 50077216  T
Q  281 tattaaattacttttttgaggggg-gaggccacttaagtagcttgctactaggcttct 337  Q
    |||||||||||||||||||||||| || ||||||| | |||||||||| | |||||||    
T  50077215 tattaaattacttttttgagggggagaagccacttcaatagcttgctattgggcttct 50077158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 157 - 405
Target Start/End: Complemental strand, 49108773 - 49108524
Alignment:
Q  157 gatataaaataagaagcgagtgcatcttttaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcggtttaatatctga 256  Q
    |||||||||| |||||| ||   || ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  49108773 gatataaaatcagaagccagcctatatttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctga 49108674  T
Q  257 tatgtggaccaatggttcacacgatattaaattacttttttgaggggg-gaggccacttaagtagcttgctactaggcttcttgtgtgtcgtcaatgtgt 355  Q
    ||||||   |||||| |||||||||||||||||||||||||||||||| || | ||    |||||||||||| | | |||||| |||||||   ||||||    
T  49108673 tatgtgactcaatgggtcacacgatattaaattacttttttgagggggagaagtcatcacagtagcttgctattggacttcttatgtgtcgctcatgtgt 49108574  T
Q  356 tgcactatagcattggtctggcgcaccccaccaattcaagtttaaatttt 405  Q
    |||||||| ||||  |   |||||||||||||||| | ||||||| ||||    
T  49108573 tgcactattgcatgagctaggcgcaccccaccaatcctagtttaattttt 49108524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 191 - 302
Target Start/End: Complemental strand, 26998846 - 26998735
Alignment:
Q  191 catacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcggtttaatatctgatatgtggaccaatggttcacacgatattaaatta 290  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||    
T  26998846 catacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccaatggtccacacgatattaaatta 26998747  T
Q  291 cttttttgaggg 302  Q
    ||||||| ||||    
T  26998746 ctttttttaggg 26998735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 191 - 296
Target Start/End: Complemental strand, 26984773 - 26984668
Alignment:
Q  191 catacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcggtttaatatctgatatgtggaccaatggttcacacgatattaaatta 290  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||    
T  26984773 catacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccaatggtccacacgatattaaatta 26984674  T
Q  291 cttttt 296  Q
    ||||||    
T  26984673 cttttt 26984668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 191 - 302
Target Start/End: Original strand, 48205832 - 48205943
Alignment:
Q  191 catacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcggtttaatatctgatatgtggaccaatggttcacacgatattaaatta 290  Q
    |||||||||||||||||||| |||||||| |||||||||||||||||||||   |||||||||| |||||||||||| ||||| ||| ||||||||||||    
T  48205832 catacctttctcggccttttagctaagattaagtgtagtatctgttcttattaatttaatatcttatatgtggaccattggtttacatgatattaaatta 48205931  T
Q  291 cttttttgaggg 302  Q
    ||||||||||||    
T  48205932 cttttttgaggg 48205943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 218 - 304
Target Start/End: Original strand, 21503706 - 21503792
Alignment:
Q  218 atcaagtgtagtatctgttcttatcggtttaatatctgatatgtggaccaatggttcacacgatattaaattacttttttgaggggg 304  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||  |||| | |||||||||||||||||| |||||||||||||    
T  21503706 atcaagtgtagtatctgttcttatcagtttaatatctgatatgtggctcaataggtcacacgatattaaattatttttttgaggggg 21503792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 192 - 295
Target Start/End: Complemental strand, 41013651 - 41013548
Alignment:
Q  192 atacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcggtttaatatctgatatgtggaccaatggttcacacgatattaaattac 291  Q
    |||| |||||||||||||||| |||||| |||| || ||| |||||||||| ||||||||||||||||||||||||| |||||||| | ||||||||||     
T  41013651 atacttttctcggccttttggttaagattaagtataatatatgttcttatccgtttaatatctgatatgtggaccaagggttcacatggtattaaattat 41013552  T
Q  292 tttt 295  Q
    ||||    
T  41013551 tttt 41013548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 197 - 297
Target Start/End: Original strand, 26982549 - 26982646
Alignment:
Q  197 tttctcggccttttggctaagatcaagtgtagtatctgttcttatcggtttaatatctgatatgtggaccaatggttcacacgatattaaattacttttt 296  Q
    ||||||||||| |||||||||||||||||||| ||||||| |||   ||||| ||||| ||||||||| ||||| || ||| |||||||||| | |||||    
T  26982549 tttctcggcctcttggctaagatcaagtgtagcatctgttatta---gtttagtatctaatatgtggatcaatgatttacatgatattaaatcatttttt 26982645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 32 - 78
Target Start/End: Complemental strand, 11652661 - 11652615
Alignment:
Q  32 tcacgtatcctttgtttggaaattggtctttgttggccatgccatgc 78  Q
    |||||||||||||| |||||||||||||| ||||||| |||||||||    
T  11652661 tcacgtatcctttgcttggaaattggtctctgttggctatgccatgc 11652615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 226 - 299
Target Start/End: Original strand, 35806165 - 35806238
Alignment:
Q  226 tagtatctgttcttatcggtttaatatctgatatgtggaccaatggttcacacgatattaaattacttttttga 299  Q
    |||||| |||||||||| ||||||||| ||||||||   | ||||  || ||||||||||||||||||||||||    
T  35806165 tagtatttgttcttatcagtttaatatatgatatgtaatctaatgagtcgcacgatattaaattacttttttga 35806238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 191 - 290
Target Start/End: Complemental strand, 49533730 - 49533638
Alignment:
Q  191 catacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcggtttaatatctgatatgtggaccaatggttcacacgatattaaatta 290  Q
    |||||||||||||||| || ||||||||||||||| | |||||||||||||     |||||||||||||||    |||| | ||||||||||||||||||    
T  49533730 catacctttctcggccctt-ggctaagatcaagtgca-tatctgttcttat-----taatatctgatatgttactcaataggtcacacgatattaaatta 49533638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 254 - 297
Target Start/End: Original strand, 54677590 - 54677633
Alignment:
Q  254 tgatatgtggaccaatggttcacacgatattaaattactttttt 297  Q
    |||||||||| | ||||| |||||||||||||||||||||||||    
T  54677590 tgatatgtggtctaatggatcacacgatattaaattactttttt 54677633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 247 - 297
Target Start/End: Complemental strand, 34481155 - 34481105
Alignment:
Q  247 taatatctgatatgtggaccaatggttcacacgatattaaattactttttt 297  Q
    |||||||||||||||| | ||||| | |||| |||||||||||||||||||    
T  34481155 taatatctgatatgtgaatcaatgatccacaagatattaaattactttttt 34481105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 197 - 250
Target Start/End: Complemental strand, 6432010 - 6431957
Alignment:
Q  197 tttctcggccttttggctaagatcaagtgtagtatctgttcttatcggtttaat 250  Q
    ||||||||||| ||||||||||||| || |||||||| |||||||  |||||||    
T  6432010 tttctcggcctattggctaagatcaggtttagtatctcttcttattagtttaat 6431957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 195 - 231
Target Start/End: Complemental strand, 34481191 - 34481155
Alignment:
Q  195 cctttctcggccttttggctaagatcaagtgtagtat 231  Q
    |||||||| ||||||||||||||||| ||||||||||    
T  34481191 cctttctcagccttttggctaagatcgagtgtagtat 34481155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 115; Significance: 3e-58; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 181 - 346
Target Start/End: Complemental strand, 10796006 - 10795840
Alignment:
Q  181 tcttttaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcggtttaatatctgatatgtggaccaatggttcacacga 280  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||  ||||||| ||||||||    
T  10796006 tctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtgacccaatgggtcacacga 10795907  T
Q  281 tattaaattacttttttgaggggg-gaggccacttaagtagcttgctactaggcttcttgtgtgtcg 346  Q
    |||||||||||||||||||||||| || ||||||| | |||||||||| |||||||||  |||||||    
T  10795906 tattaaattacttttttgagggggagaagccacttcaatagcttgctattaggcttctcatgtgtcg 10795840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 181 - 405
Target Start/End: Complemental strand, 10791768 - 10791543
Alignment:
Q  181 tcttttaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcggtttaatatctgatatgtggaccaatggttcacacga 280  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||  ||||||| ||||| ||    
T  10791768 tctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtgatccaatgggtcacatga 10791669  T
Q  281 tattaaattacttttttgaggggg-gaggccacttaagtagcttgctactaggcttcttgtgtgtcgtcaatgtgttgcactatagcattggtctggcgc 379  Q
    |||||||||||||||||||||||| || ||||||| | |||||||||| |||||||||  |||||||    || |||||||||| ||||  ||  ||  |    
T  10791668 tattaaattacttttttgagggggagaagccacttcaatagcttgctattaggcttctcatgtgtcgctcgtgcgttgcactattgcatgagttaggtac 10791569  T
Q  380 accccaccaattcaagtttaaatttt 405  Q
    ||||||||||||| ||||||| ||||    
T  10791568 accccaccaattctagtttaactttt 10791543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 190 - 387
Target Start/End: Original strand, 30521242 - 30521440
Alignment:
Q  190 tcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcggtttaatatctgatatgtggaccaatggttcacacgatattaaatt 289  Q
    |||||||||||||| |||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||  |  |||||||||||| ||||    
T  30521242 tcatacctttctcgaccttttggctgagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccatcgcctcacacgatattcaatt 30521341  T
Q  290 acttttttgaggggg-gaggccacttaagtagcttgctactaggcttcttgtgtgtcgtcaatgtgttgcactatagcattggtctggcgcaccccacc 387  Q
      ||||||||||||| ||| |||||    |||||||||| | ||  |||   ||||||||  ||  ||||||||| ||||||| |||||||||||||||    
T  30521342 tattttttgagggggagagtccactactatagcttgctattgggtctctcaagtgtcgtctttgctttgcactattgcattggcctggcgcaccccacc 30521440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 244 - 387
Target Start/End: Original strand, 13136608 - 13136752
Alignment:
Q  244 gtttaatatctgatatgtggaccaatggttcacacgatattaaattacttttttgaggggggag-gccacttaagtagcttgctactaggcttcttgtgt 342  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||  | |||| |  ||||||||||||||  ||||||  |||    
T  13136608 gtttaatatctgatatgtggaccaatggtccacacgatattaaattacttttttgagagggaggagccattgcagtagcttgctactctgcttctcttgt 13136707  T
Q  343 gtcgtcaatgtgttgcactatagcattggtctggcgcaccccacc 387  Q
    ||||  |||| |||||||||||||||| || ||||||||||||||    
T  13136708 gtcgctaatgcgttgcactatagcattagtttggcgcaccccacc 13136752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 192 - 302
Target Start/End: Original strand, 8875691 - 8875803
Alignment:
Q  192 atacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcggtttaatatctgatatgtggaccaatggttcacacgatattaaat--t 289  Q
    |||| |||| |||||||||||||||||||||||||| ||||||||||||||  ||||||||||||||||||| ||||| | | ||||||||||||||  |    
T  8875691 atacatttcccggccttttggctaagatcaagtgtaatatctgttcttatcaatttaatatctgatatgtggtccaatagattacacgatattaaattat 8875790  T
Q  290 acttttttgaggg 302  Q
    |||||||||||||    
T  8875791 acttttttgaggg 8875803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 233 - 304
Target Start/End: Original strand, 11333273 - 11333344
Alignment:
Q  233 tgttcttatcggtttaatatctgatatgtggaccaatggttcacacgatattaaattacttttttgaggggg 304  Q
    |||||||||| |||||||||||||||||||| |||| || ||||||||||||||||||||||||||||||||    
T  11333273 tgttcttatcagtttaatatctgatatgtggtccaacggatcacacgatattaaattacttttttgaggggg 11333344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 316 - 389
Target Start/End: Original strand, 10509478 - 10509551
Alignment:
Q  316 agtagcttgctactaggcttcttgtgtgtcgtcaatgtgttgcactatagcattggtctggcgcaccccaccaa 389  Q
    |||||||||||||| ||||||||||||||||  |||| ||||||||||||||||||  ||| ||||||||||||    
T  10509478 agtagcttgctactcggcttcttgtgtgtcgctaatgcgttgcactatagcattggcttggagcaccccaccaa 10509551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 197 - 296
Target Start/End: Original strand, 21216032 - 21216131
Alignment:
Q  197 tttctcggccttttggctaagatcaagtgtagtatctgttcttatcggtttaatatctgatatgtggaccaatggttcacacgatattaaattacttttt 296  Q
    ||||| || |||||| ||||||||| || ||| |||| |||||||| ||||||||||| ||||||||  |||||  |||||  |||||||||||||||||    
T  21216032 tttcttggtcttttgactaagatcatgtatagcatctattcttatcagtttaatatcttatatgtggctcaatgaatcacaaaatattaaattacttttt 21216131  T

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Target: chr7 (Bit Score: 71; Significance: 5e-32; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 190 - 304
Target Start/End: Original strand, 27134511 - 27134625
Alignment:
Q  190 tcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcggtttaatatctgatatgtggaccaatggttcacacgatattaaatt 289  Q
    |||||||||| ||||||||||  |||||||||| | |||||||||||||||| ||||||||||||||||||||| | ||||  ||| |||||||||||||    
T  27134511 tcatacctttttcggccttttcactaagatcaaatctagtatctgttcttattggtttaatatctgatatgtggtctaatgagtcaaacgatattaaatt 27134610  T
Q  290 acttttttgaggggg 304  Q
    |||||||||||||||    
T  27134611 acttttttgaggggg 27134625  T

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Target: chr7; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 196 - 304
Target Start/End: Original strand, 8128149 - 8128256
Alignment:
Q  196 ctttctcggccttttggctaagatcaagtgtagtatctgttcttatcggtttaatatctgatatgtggaccaatggttcacacgatattaaattactttt 295  Q
    ||||||||  ||||||| |||||| ||||||||||| ||||||| |  ||||||||| |||||||||| ||||||| |||||| ||||||||||  |||     
T  8128149 ctttctcgttcttttggttaagattaagtgtagtatatgttctttttagtttaatatatgatatgtgggccaatgg-tcacacaatattaaatttatttc 8128247  T
Q  296 ttgaggggg 304  Q
    |||||||||    
T  8128248 ttgaggggg 8128256  T

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Target: chr3 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 192 - 238
Target Start/End: Complemental strand, 15758608 - 15758562
Alignment:
Q  192 atacctttctcggccttttggctaagatcaagtgtagtatctgttct 238  Q
    ||||||||||| |||||||||||||||||||||||| ||||||||||    
T  15758608 atacctttctcagccttttggctaagatcaagtgtaatatctgttct 15758562  T

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Target: scaffold0549 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0549
Description:

Target: scaffold0549; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 244 - 301
Target Start/End: Original strand, 5450 - 5507
Alignment:
Q  244 gtttaatatctgatatgtggaccaatggttcacacgatattaaattacttttttgagg 301  Q
    |||||||||||||||| ||| ||||| |||||||||||||||||||  ||||||||||    
T  5450 gtttaatatctgatatatgggccaattgttcacacgatattaaatttattttttgagg 5507  T

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