View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13916_low_12 (Length: 384)
Name: NF13916_low_12
Description: NF13916
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13916_low_12 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 345; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 10 - 370
Target Start/End: Original strand, 1716753 - 1717113
Alignment:
| Q |
10 |
aatatattttacagattttgagaagctctccaatgaatatttttaatccctggatgaaggaaaatgaatggaaagggaataaaaatgatggctacagtcc |
109 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||| |
|
|
| T |
1716753 |
aatacattttacagattttgagaagctctccaatgaatatttttaatccctggatgaaggaaaatgaatggaaagcgaataaaaatgatggctgcagtcc |
1716852 |
T |
|
| Q |
110 |
tatgaattgagtttgagtctttcttctccctccttttcttctaattccaaactcattgttgaggccgctcaaacaagtgcctcatgaagtgttatatcac |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1716853 |
tatgaattgagtttgagtctttcttctccctccttttcttctaattccaaactcattgttgaggccgctcaaacaagtgcctcatgaagtgttatatcac |
1716952 |
T |
|
| Q |
210 |
ttctggaattaaatatcagctctaaaactaaagtagcttaattggaatcatacatttctccaaggccagccacaaagattgctagaaaccattttgttta |
309 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
1716953 |
ttctggaattaaatatcagctctaaaactaaagtagcttaattggaatcatacatttctccaaggccagccacaaagactgctagaaaccattttgttta |
1717052 |
T |
|
| Q |
310 |
acaatgatgctcggaaaaattgaatgttatgctcacaaatatcttcactcctacacataat |
370 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1717053 |
acaatgatgctcggaaaaattgaatgttatgctcacaaatatcttcactcctacacataat |
1717113 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 121; Significance: 7e-62; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 121; E-Value: 7e-62
Query Start/End: Original strand, 16 - 168
Target Start/End: Original strand, 42221152 - 42221304
Alignment:
| Q |
16 |
ttttacagattttgagaagctctccaatgaatatttttaatccctggatgaaggaaaatgaatggaaagggaataaaaatgatggctacagtcctatgaa |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||| |
|
|
| T |
42221152 |
ttttacagattttgagaagctctccaatgaatatttttaatccctggatgaaggaaaatgaatggaaaggaaataaaaatgatggctacagttgcgtgaa |
42221251 |
T |
|
| Q |
116 |
ttgagtttgagtctttcttctccctccttttcttctaattccaaactcattgt |
168 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||| ||| ||||||| |
|
|
| T |
42221252 |
ttgagtttgagtctttcttctccctctttttcttctaattcaaaattcattgt |
42221304 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 258 - 370
Target Start/End: Original strand, 42221712 - 42221824
Alignment:
| Q |
258 |
catacatttctccaaggccagccacaaagattgctagaaaccattttgtttaacaatgatgctcggaaaaattgaatgttatgctcacaaatatcttcac |
357 |
Q |
| |
|
|||||| ||||||||| |||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
42221712 |
catacacttctccaagatcagccacaaatactgctagaaaccattttgtttaacaatgatgctcggaaaaattgaatgttatgctgacaaatatcttcac |
42221811 |
T |
|
| Q |
358 |
tcctacacataat |
370 |
Q |
| |
|
|| |||||||||| |
|
|
| T |
42221812 |
tcatacacataat |
42221824 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 165 - 256
Target Start/End: Original strand, 42221423 - 42221514
Alignment:
| Q |
165 |
ttgttgaggccgctcaaacaagtgcctcatgaagtgttatatcacttctggaattaaatatcagctctaaaactaaagtagcttaattggaa |
256 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42221423 |
ttgttgacgccgctcaaacaagtgcctcatgaagtgtaatatcacttttggaattaaatatcagctctaaaactaaagtagcttaattggaa |
42221514 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 11 - 56
Target Start/End: Original strand, 41841458 - 41841503
Alignment:
| Q |
11 |
atatattttacagattttgagaagctctccaatgaatatttttaat |
56 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||| |||||||||| |
|
|
| T |
41841458 |
atatattttacagattttgagaagctcaccaatgattatttttaat |
41841503 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 221 - 268
Target Start/End: Original strand, 42555682 - 42555729
Alignment:
| Q |
221 |
aatatcagctctaaaactaaagtagcttaattggaatcatacatttct |
268 |
Q |
| |
|
|||||||||||| ||| |||| |||||||||||||||||||| ||||| |
|
|
| T |
42555682 |
aatatcagctctcaaaataaaatagcttaattggaatcatacctttct |
42555729 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 115; Significance: 3e-58; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 10 - 168
Target Start/End: Original strand, 3461442 - 3461599
Alignment:
| Q |
10 |
aatatattttacagattttgagaagctctccaatgaatatttttaatccctggatgaaggaaaatgaatggaaagggaataaaaatgatggctacagtcc |
109 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||| ||||||||||||| ||||| |
|
|
| T |
3461442 |
aatacattttacagattttgagaagctctccaatgaatatttttaatcgctagatgaaggaaaatgaatggaaagggaattaaaatgatggctatagtcc |
3461541 |
T |
|
| Q |
110 |
tatgaattgagtttgagtctttcttctccctccttttcttctaattccaaactcattgt |
168 |
Q |
| |
|
| ||||||||| | | ||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
3461542 |
tgtgaattgag-tagtgtctttcttctcccttcttttcttctaattccaaactcattgt |
3461599 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 112 - 168
Target Start/End: Original strand, 11652702 - 11652758
Alignment:
| Q |
112 |
tgaattgagtttgagtctttcttctccctccttttcttctaattccaaactcattgt |
168 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
11652702 |
tgaattgaatttgagtctttcttctccctccttttcttctaattccaaactccttgt |
11652758 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University