View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13916_low_13 (Length: 379)
Name: NF13916_low_13
Description: NF13916
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13916_low_13 |
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Alignment Details
Target: chr1 (Bit Score: 315; Significance: 1e-177; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 5 - 364
Target Start/End: Original strand, 52511230 - 52511593
Alignment:
| Q |
5 |
tgtcgaagaatatgttatctcaatttctgtccaagtaacacaggtgtgaacaaataaggcataaattttttagccgctgttcaatttttaagaccaatat |
104 |
Q |
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| T |
52511230 |
tgtcgaaaaaaatgttatctcaatttctgtccaagtaacacaggtgtgaacaaataaggcataaattttttagccgctgttcaatttttaagagcaatat |
52511329 |
T |
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| Q |
105 |
aaagagcttgaatctgcttgacacatcttggaggatataataccctagatacacatgagttgaataaaaatgtacgtatttacttggtaactatctatat |
204 |
Q |
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| T |
52511330 |
aaagagcttgaatctgcttgacacatcttggaggatataataccctagatacacatgagttgaataaaaatgtacgtatttacttggtaactatctatat |
52511429 |
T |
|
| Q |
205 |
aggaccatacatagcaatacttgctagaagtgtctgttgaatgtttacac----tatacctgacattttggaagtcattttggtaatcgtgaatatgggc |
300 |
Q |
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|||||| |||||||||||||||| ||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
52511430 |
aggaccttacatagcaatacttggtagaagtgtttgttgaatgtttacactatatatacctgacattttggaagtcattttggtaatcgtgaatattggc |
52511529 |
T |
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| Q |
301 |
aatcttagtattgaaaaatggtatttctttcatacaaaatattgaaattcaataggtgctaact |
364 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
52511530 |
aatcttagtattgaaaaatggtttttctttcatacaaaatattgaaattcaataggtgctaact |
52511593 |
T |
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